Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 110231936 . A C CCDS809.1:NM_000561.3:c.349Aat>Cat_NP_000552.2:p.117N>H Homo sapiens glutathione S-transferase mu 1 (GSTM1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1xw6 1 P09488 100.0 3e-164 X-RAY
 2004-12-21 ASN A:117 A:116 50.0 0.312 S -70.9 127.4 50.0 0.312 0.0 HOH
 2.919
 ND2
 O
ASN B:117 B:116 47.0 0.294 S -70.7 127.1 47.0 0.294 0.0 HOH
 2.731
 ND2
 O
ASN C:117 C:116 47.0 0.294 S -70.7 127.1 NA NA NA
ASN D:117 D:116 48.0 0.3 S -70.5 127.2 NA NA NA
1xwk 1 P09488 100.0 3e-164 X-RAY
 2004-12-21 ASN A:117 A:116 46.0 0.287 S -82.2 125.4 46.0 0.287 0.0 GDN
HOH
 6.377
6.092
 N
N
 O4B
O
ASN B:117 B:116 59.0 0.369 S -80.1 126.3 NA NA NA
ASN C:117 C:116 46.0 0.287 -80.2 126.2 46.0 0.287 0.0 GDN
HOH
 6.630
3.911
 N
N
 O4B
O
1yj6 1 P09488 100.0 3e-164 X-RAY
 2005-02-01 ASN A:117 A:116 49.0 0.306 S -76.3 123.0 49.0 0.306 0.0 HOH
 5.352
 O
 O
ASN B:117 B:116 52.0 0.325 S -74.6 122.4 52.0 0.325 0.0 HOH
 4.290
 N
 O
ASN C:117 C:116 52.0 0.325 S -74.8 125.6 NA NA NA
2f3m 1 P09488 100.0 3e-164 X-RAY
 2006-04-25 ASN A:117 A:116 55.0 0.344 S -86.9 121.3 55.0 0.344 0.0 GTD
HOH
 8.220
7.713
 N
N
 O42
O
ASN B:117 B:116 53.0 0.331 S -86.5 121.6 53.0 0.331 0.0 GTD
 8.020
 N
 O42
ASN C:117 C:116 54.0 0.338 S -88.0 122.5 NA NA NA
ASN D:117 D:116 55.0 0.344 S -87.0 122.6 NA NA NA
ASN E:117 E:116 53.0 0.331 -86.6 121.7 NA NA NA
ASN F:117 F:116 53.0 0.331 S -87.4 121.0 NA NA NA
7beu 1 P09488 100.0 3e-164 X-RAY
 2022-01-12 ASN A:117 A:116 53.0 0.331 S -83.3 132.2 53.0 0.331 0.0 HOH
 2.788
 ND2
 O
ASN B:117 B:116 53.0 0.331 S -85.3 133.0 NA NA NA
ASN C:117 C:116 58.0 0.362 S -85.3 129.8 NA NA NA
ASN D:117 D:116 75.0 0.469 S -96.9 149.8 75.0 0.469 0.0 HOH
 2.680
 OD1
 O
1gtu 1 P09488 100.0 2e-163 X-RAY
 1999-02-02 ASN A:116 A:116 54.0 0.338 S -74.7 123.9 54.0 0.338 0.0
ASN B:116 B:116 52.0 0.325 S -75.1 130.9 52.0 0.325 0.0
ASN C:116 C:116 53.0 0.331 S -83.5 133.5 NA NA NA
ASN D:116 D:116 50.0 0.312 S -83.8 130.0 NA NA NA
4gtu 1 Q03013 87.04 3e-144 X-RAY
 2000-01-14 SER A:116 A:116 22.0 0.191 S -95.5 141.3 22.0 0.191 0.0
SER B:116 B:116 23.0 0.2 S -127.4 124.8 23.0 0.2 0.0
SER C:116 C:116 36.0 0.313 -91.3 133.5 NA NA NA
SER D:116 D:116 27.0 0.235 S -108.4 133.1 NA NA NA
SER E:116 E:116 27.0 0.235 S -74.9 131.1 NA NA NA
SER F:116 F:116 22.0 0.191 -86.5 124.9 NA NA NA
SER G:116 G:116 41.0 0.357 S -54.2 135.8 NA NA NA
SER H:116 H:116 31.0 0.27 S -68.6 134.8 NA NA NA
2c4j 1 P28161 84.86 3e-141 X-RAY
 2005-10-26 ASP A:117 A:117 50.0 0.333 -77.9 126.6 50.0 0.333 0.0 HOH
 3.491
 N
 O
ASP B:117 B:117 40.0 0.267 -77.0 129.8 40.0 0.267 0.0 HOH
 2.683
 OD1
 O
ASP C:117 C:117 40.0 0.267 -81.9 128.8 NA NA NA
ASP D:117 D:117 39.0 0.26 -82.8 130.2 NA NA NA
1xw5 1 P28161 84.33 6e-140 X-RAY
 2004-11-30 ASP A:116 A:116 42.0 0.28 -80.6 133.7 42.0 0.28 0.0 HOH
 3.054
 OD1
 O
ASP B:116 B:116 48.0 0.32 -80.3 129.4 48.0 0.32 0.0 HOH
 2.905
 OD1
 O
1ykc 1 P28161 84.33 6e-140 X-RAY
 2005-01-25 ASP A:116 A:116 50.0 0.333 S -69.9 129.2 50.0 0.333 0.0 GDS
HOH
 5.321
2.639
 N
OD1
 OE1
O
ASP B:116 B:116 52.0 0.347 S -70.5 127.5 52.0 0.347 0.0 GDS
HOH
 4.903
3.020
 N
OD1
 OE1
O
2ab6 1 P28161 84.33 6e-140 X-RAY
 2005-08-02 ASP A:116 A:116 49.0 0.327 -77.6 127.3 49.0 0.327 0.0 HOH
 2.715
 OD1
 O
ASP B:116 B:116 47.0 0.313 -76.8 131.4 47.0 0.313 0.0 HOH
 3.579
 N
 O
ASP C:116 C:116 49.0 0.327 -72.4 127.1 NA NA NA
ASP D:116 D:116 49.0 0.327 -76.2 128.7 NA NA NA
2gtu 1 P28161 84.33 6e-140 X-RAY
 1999-03-02 ASP A:116 A:116 42.0 0.28 -79.9 127.9 42.0 0.28 0.0
ASP B:116 B:116 47.0 0.313 -82.5 128.5 47.0 0.313 0.0
3gtu 1 P28161 84.33 6e-140 X-RAY
 1999-07-29 ASP A:116 A:116 53.0 0.353 S -70.7 126.3 53.0 0.353 0.0 HOH
 6.366
 N
 O
ASP C:116 C:116 49.0 0.327 S -73.4 129.7 NA NA NA
3gur 1 P28161 84.33 6e-140 X-RAY
 2009-10-27 ASP A:116 A:116 45.0 0.3 -82.9 127.4 45.0 0.3 0.0 BYG
 9.535
 N
 OA2
ASP B:116 B:116 51.0 0.34 S -69.7 135.5 51.0 0.34 0.0
ASP C:116 C:116 43.0 0.287 -73.6 137.4 NA NA NA
ASP D:116 D:116 55.0 0.367 S -76.3 128.0 NA NA NA
5hwl 1 P28161 84.33 6e-140 X-RAY
 2017-11-08 ASP A:116 A:116 53.0 0.353 -82.4 131.2 53.0 0.353 0.0 NNE
HOH
 9.588
5.637
 N
OD2
 OBL
O
ASP B:116 B:116 60.0 0.4 -78.2 128.1 60.0 0.4 0.0 NNE
HOH
 9.406
7.440
 N
CB
 OAA
O
1hna 1 P28161 83.87 1e-138 X-RAY
 1994-01-31 ASP A:116 A:116 46.0 0.307 -112.1 142.8 46.0 0.307 0.0
1hnb 1 P28161 83.87 1e-138 X-RAY
 1994-01-31 ASP A:116 A:116 67.0 0.447 S -83.3 126.4 67.0 0.447 0.0
ASP B:116 B:116 44.0 0.293 S -82.1 135.1 44.0 0.293 0.0
1hnc 1 P28161 83.87 1e-138 X-RAY
 1994-01-31 ASP A:116 A:116 31.0 0.207 -74.3 133.0 31.0 0.207 0.0
ASP B:116 B:116 32.0 0.213 S -120.5 147.2 32.0 0.213 0.0
ASP C:116 C:116 58.0 0.387 S -52.2 129.3 NA NA NA
ASP D:116 D:116 55.0 0.367 S -119.7 118.4 NA NA NA
2dc5 1 30354091 81.57 6e-137 X-RAY
 2006-06-28 ASN A:124 A:124 56.0 0.35 S -82.8 131.3 56.0 0.35 0.0 HOH
 3.454
 CA
 O
ASN B:124 B:124 58.0 0.362 -90.6 134.4 58.0 0.362 0.0 HOH
 3.649
 CA
 O
1b4p 1 P08010 80.65 6e-136 X-RAY
 2003-07-08 SER A:116 A:116 25.0 0.217 -76.3 138.9 25.0 0.217 0.0 HOH
 6.261
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09488-f1 1 P09488 100.0 1e-164 ASN A:117 A:117 52.0 0.325 -79.0 130.1
af-q03013-f1 1 Q03013 86.7 3e-145 SER A:117 A:117 22.0 0.191 -73.4 135.8
af-p46439-f1 1 P46439 87.61 6e-142 ASP A:117 A:117 54.0 0.36 -75.6 133.2
af-p28161-f1 1 P28161 84.4 3e-141 ASP A:117 A:117 38.0 0.253 -78.1 129.4