Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 110232965 | . | C | A | CCDS809.1:NM_000561.3:c.433Cgg>Agg_NP_000552.2:p.145R>R | Homo sapiens glutathione S-transferase mu 1 (GSTM1), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1xw6 | 1 | P09488 | 100.0 | 3e-164 |
X-RAY |
2004-12-21 | ARG | A:145 | A:144 | 87.0 | 0.387 | -78.9 | 144.1 | 87.0 | 0.387 | 0.0 |
HOH |
2.741 |
O |
O |
|||
ARG | B:145 | B:144 | 88.0 | 0.391 | -77.0 | 144.8 | 88.0 | 0.391 | 0.0 |
HOH |
2.847 |
O |
O |
||||||||||
ARG | C:145 | C:144 | 89.0 | 0.396 | -76.7 | 144.1 | NA | NA | NA | ||||||||||||||
ARG | D:145 | D:144 | 88.0 | 0.391 | -77.6 | 146.4 | NA | NA | NA | ||||||||||||||
1xwk | 1 | P09488 | 100.0 | 3e-164 |
X-RAY |
2004-12-21 | ARG | A:145 | A:144 | 94.0 | 0.418 | -78.7 | 148.5 | 94.0 | 0.418 | 0.0 |
HOH |
7.713 |
NH2 |
O |
|||
ARG | B:145 | B:144 | 95.0 | 0.422 | -83.6 | 145.2 | NA | NA | NA | ||||||||||||||
ARG | C:145 | C:144 | 92.0 | 0.409 | -81.4 | 145.8 | 92.0 | 0.409 | 0.0 |
HOH |
3.012 |
NH2 |
O |
||||||||||
1yj6 | 1 | P09488 | 100.0 | 3e-164 |
X-RAY |
2005-02-01 | ARG | A:145 | A:144 | 99.0 | 0.44 | -69.7 | 149.0 | 99.0 | 0.44 | 0.0 |
HOH |
2.615 |
O |
O |
|||
ARG | B:145 | B:144 | 95.0 | 0.422 | -72.7 | 145.5 | 95.0 | 0.422 | 0.0 |
HOH |
2.892 |
O |
O |
||||||||||
ARG | C:145 | C:144 | 94.0 | 0.418 | -75.5 | 143.9 | NA | NA | NA | ||||||||||||||
2f3m | 1 | P09488 | 100.0 | 3e-164 |
X-RAY |
2006-04-25 | ARG | A:145 | A:144 | 88.0 | 0.391 | -62.7 | 147.3 | 88.0 | 0.391 | 0.0 | |||||||
ARG | B:145 | B:144 | 89.0 | 0.396 | -65.3 | 149.6 | 89.0 | 0.396 | 0.0 |
HOH |
7.435 |
CD |
O |
||||||||||
ARG | C:145 | C:144 | 90.0 | 0.4 | -65.3 | 148.4 | NA | NA | NA | ||||||||||||||
ARG | D:145 | D:144 | 89.0 | 0.396 | -67.8 | 147.8 | NA | NA | NA | ||||||||||||||
ARG | E:145 | E:144 | 90.0 | 0.4 | -64.8 | 148.9 | NA | NA | NA | ||||||||||||||
ARG | F:145 | F:144 | 88.0 | 0.391 | -65.8 | 148.9 | NA | NA | NA | ||||||||||||||
7beu | 1 | P09488 | 100.0 | 3e-164 |
X-RAY |
2022-01-12 | ARG | A:145 | A:144 | 101.0 | 0.449 | -69.7 | 149.7 | 101.0 | 0.449 | 0.0 |
HOH |
2.672 |
O |
O |
|||
ARG | B:145 | B:144 | 80.0 | 0.356 | -63.4 | 146.7 | NA | NA | NA | ||||||||||||||
ARG | C:145 | C:144 | 98.0 | 0.436 | -64.0 | 146.8 | NA | NA | NA | ||||||||||||||
ARG | D:145 | D:144 | 93.0 | 0.413 | -67.5 | 147.8 | 93.0 | 0.413 | 0.0 |
HOH |
2.257 |
NH1 |
O |
||||||||||
1gtu | 1 | P09488 | 100.0 | 2e-163 |
X-RAY |
1999-02-02 | ARG | A:144 | A:144 | 77.0 | 0.342 | -76.2 | 153.1 | 77.0 | 0.342 | 0.0 | |||||||
ARG | B:144 | B:144 | 82.0 | 0.364 | -74.2 | 150.8 | 82.0 | 0.364 | 0.0 | ||||||||||||||
ARG | C:144 | C:144 | 77.0 | 0.342 | -78.5 | 153.7 | NA | NA | NA | ||||||||||||||
ARG | D:144 | D:144 | 79.0 | 0.351 | -83.9 | 150.1 | NA | NA | NA | ||||||||||||||
4gtu | 1 | Q03013 | 87.04 | 3e-144 |
X-RAY |
2000-01-14 | ARG | A:144 | A:144 | 79.0 | 0.351 | -61.2 | 158.3 | 79.0 | 0.351 | 0.0 | |||||||
ARG | B:144 | B:144 | 61.0 | 0.271 | S | -72.4 | 154.2 | 61.0 | 0.271 | 0.0 | |||||||||||||
ARG | C:144 | C:144 | 82.0 | 0.364 | S | -153.2 | 153.2 | NA | NA | NA | |||||||||||||
ARG | D:144 | D:144 | 72.0 | 0.32 | S | -61.6 | 142.0 | NA | NA | NA | |||||||||||||
ARG | E:144 | E:144 | 78.0 | 0.347 | S | -176.1 | 149.7 | NA | NA | NA | |||||||||||||
ARG | F:144 | F:144 | 83.0 | 0.369 | -72.6 | 125.6 | NA | NA | NA | ||||||||||||||
ARG | G:144 | G:144 | 87.0 | 0.387 | -67.8 | 139.3 | NA | NA | NA | ||||||||||||||
ARG | H:144 | H:144 | 64.0 | 0.284 | S | -49.8 | 142.8 | NA | NA | NA | |||||||||||||
2c4j | 1 | P28161 | 84.86 | 3e-141 |
X-RAY |
2005-10-26 | GLN | A:145 | A:145 | 59.0 | 0.328 | -71.7 | 146.9 | 59.0 | 0.328 | 0.0 |
HOH |
2.631 |
OE1 |
O |
|||
GLN | B:145 | B:145 | 55.0 | 0.306 | -74.8 | 147.7 | 55.0 | 0.306 | 0.0 |
HOH |
2.618 |
O |
O |
||||||||||
GLN | C:145 | C:145 | 56.0 | 0.311 | -65.3 | 144.4 | NA | NA | NA | ||||||||||||||
GLN | D:145 | D:145 | 60.0 | 0.333 | -67.4 | 144.6 | NA | NA | NA | ||||||||||||||
1xw5 | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
2004-11-30 | GLN | A:144 | A:144 | 60.0 | 0.333 | -68.8 | 143.9 | 60.0 | 0.333 | 0.0 |
HOH |
2.680 |
OE1 |
O |
|||
GLN | B:144 | B:144 | 59.0 | 0.328 | -75.3 | 147.3 | 59.0 | 0.328 | 0.0 |
HOH |
2.695 |
O |
O |
||||||||||
1ykc | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
2005-01-25 | GLN | A:144 | A:144 | 64.0 | 0.356 | -81.0 | 144.4 | 64.0 | 0.356 | 0.0 |
HOH |
2.710 |
O |
O |
|||
GLN | B:144 | B:144 | 59.0 | 0.328 | -77.8 | 147.8 | 59.0 | 0.328 | 0.0 |
HOH |
2.627 |
O |
O |
||||||||||
2ab6 | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
2005-08-02 | GLN | A:144 | A:144 | 56.0 | 0.311 | -73.3 | 147.0 | 56.0 | 0.311 | 0.0 |
HOH |
4.097 |
N |
O |
|||
GLN | B:144 | B:144 | 53.0 | 0.294 | -69.3 | 145.7 | 53.0 | 0.294 | 0.0 |
HOH |
2.634 |
O |
O |
||||||||||
GLN | C:144 | C:144 | 54.0 | 0.3 | -75.0 | 149.3 | NA | NA | NA | ||||||||||||||
GLN | D:144 | D:144 | 53.0 | 0.294 | -75.1 | 147.3 | NA | NA | NA | ||||||||||||||
2gtu | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
1999-03-02 | GLN | A:144 | A:144 | 65.0 | 0.361 | -84.3 | 145.0 | 65.0 | 0.361 | 0.0 |
HOH |
4.611 |
O |
O |
|||
GLN | B:144 | B:144 | 62.0 | 0.344 | -84.9 | 140.5 | 62.0 | 0.344 | 0.0 |
HOH |
4.440 |
O |
O |
||||||||||
3gtu | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
1999-07-29 | GLN | A:144 | A:144 | 55.0 | 0.306 | -79.6 | 149.2 | 55.0 | 0.306 | 0.0 | |||||||
GLN | C:144 | C:144 | 54.0 | 0.3 | -79.5 | 148.7 | NA | NA | NA | ||||||||||||||
3gur | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
2009-10-27 | GLN | A:144 | A:144 | 58.0 | 0.322 | -87.8 | 143.4 | 58.0 | 0.322 | 0.0 |
HOH |
2.763 |
O |
O |
|||
GLN | B:144 | B:144 | 55.0 | 0.306 | -67.3 | 144.4 | 55.0 | 0.306 | 0.0 |
HOH |
2.898 |
O |
O |
||||||||||
GLN | C:144 | C:144 | 65.0 | 0.361 | -72.0 | 145.2 | NA | NA | NA | ||||||||||||||
GLN | D:144 | D:144 | 48.0 | 0.267 | -68.5 | 147.1 | NA | NA | NA | ||||||||||||||
5hwl | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
2017-11-08 | GLN | A:144 | A:144 | 68.0 | 0.378 | -73.7 | 147.8 | 68.0 | 0.378 | 0.0 |
HOH |
2.618 |
O |
O |
|||
GLN | B:144 | B:144 | 57.0 | 0.317 | -74.3 | 148.9 | 57.0 | 0.317 | 0.0 |
HOH |
2.527 |
O |
O |
||||||||||
1hna | 1 | P28161 | 83.87 | 1e-138 |
X-RAY |
1994-01-31 | GLN | A:144 | A:144 | 47.0 | 0.261 | -76.8 | 144.7 | 47.0 | 0.261 | 0.0 |
HOH |
2.855 |
O |
O |
|||
1hnb | 1 | P28161 | 83.87 | 1e-138 |
X-RAY |
1994-01-31 | GLN | A:144 | A:144 | 44.0 | 0.244 | -77.2 | 137.5 | 44.0 | 0.244 | 0.0 | |||||||
GLN | B:144 | B:144 | 58.0 | 0.322 | -71.7 | 137.9 | 58.0 | 0.322 | 0.0 | ||||||||||||||
1hnc | 1 | P28161 | 83.87 | 1e-138 |
X-RAY |
1994-01-31 | GLN | A:144 | A:144 | 79.0 | 0.439 | S | -71.4 | 145.3 | 79.0 | 0.439 | 0.0 | ||||||
GLN | B:144 | B:144 | 54.0 | 0.3 | S | -54.2 | 143.7 | 54.0 | 0.3 | 0.0 | |||||||||||||
GLN | C:144 | C:144 | 52.0 | 0.289 | -46.4 | 142.9 | NA | NA | NA | ||||||||||||||
GLN | D:144 | D:144 | 58.0 | 0.322 | -70.4 | 147.4 | NA | NA | NA | ||||||||||||||
2dc5 | 1 | 30354091 | 81.57 | 6e-137 |
X-RAY |
2006-06-28 | ARG | A:152 | A:152 | 88.0 | 0.391 | -70.1 | 145.4 | 88.0 | 0.391 | 0.0 |
HOH |
2.633 |
O |
O |
|||
ARG | B:152 | B:152 | 94.0 | 0.418 | -70.1 | 147.9 | 94.0 | 0.418 | 0.0 |
HOH |
2.646 |
O |
O |
||||||||||
1b4p | 1 | P08010 | 80.65 | 6e-136 |
X-RAY |
2003-07-08 | GLN | A:144 | A:144 | 49.0 | 0.272 | -79.8 | 153.2 | 49.0 | 0.272 | 0.0 |
HOH |
2.801 |
O |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p09488-f1 | 1 | P09488 | 100.0 | 1e-164 | ARG | A:145 | A:145 | 100.0 | 0.444 | -71.1 | 147.6 | ||
af-q03013-f1 | 1 | Q03013 | 86.7 | 3e-145 | ARG | A:145 | A:145 | 99.0 | 0.44 | -72.6 | 149.2 | ||
af-p46439-f1 | 1 | P46439 | 87.61 | 6e-142 | ARG | A:145 | A:145 | 93.0 | 0.413 | -70.5 | 147.7 | ||
af-p28161-f1 | 1 | P28161 | 84.4 | 3e-141 | GLN | A:145 | A:145 | 63.0 | 0.35 | -76.3 | 147.1 |