Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 110233121 | . | C | A | CCDS809.1:NM_000561.3:c.502Cgt>Agt_NP_000552.2:p.168R>S | Homo sapiens glutathione S-transferase mu 1 (GSTM1), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1xw6 | 1 | P09488 | 100.0 | 3e-164 |
X-RAY |
2004-12-21 | ARG | A:168 | A:167 | 79.0 | 0.351 | H | -70.4 | -28.5 | 79.0 | 0.351 | 0.0 |
HOH |
2.622 |
NH2 |
O |
||
ARG | B:168 | B:167 | 81.0 | 0.36 | H | -70.2 | -29.6 | 81.0 | 0.36 | 0.0 |
HOH |
3.105 |
O |
O |
|||||||||
ARG | C:168 | C:167 | 81.0 | 0.36 | H | -70.5 | -27.7 | NA | NA | NA | |||||||||||||
ARG | D:168 | D:167 | 82.0 | 0.364 | H | -71.5 | -28.3 | NA | NA | NA | |||||||||||||
1xwk | 1 | P09488 | 100.0 | 3e-164 |
X-RAY |
2004-12-21 | ARG | A:168 | A:167 | 85.0 | 0.378 | H | -75.1 | -28.3 | 85.0 | 0.378 | 0.0 |
HOH |
2.844 |
NH2 |
O |
||
ARG | B:168 | B:167 | 82.0 | 0.364 | H | -71.0 | -27.6 | NA | NA | NA | |||||||||||||
ARG | C:168 | C:167 | 85.0 | 0.378 | H | -76.8 | -31.0 | 85.0 | 0.378 | 0.0 |
HOH |
3.151 |
NE |
O |
|||||||||
1yj6 | 1 | P09488 | 100.0 | 3e-164 |
X-RAY |
2005-02-01 | ARG | A:168 | A:167 | 82.0 | 0.364 | H | -70.6 | -24.4 | 82.0 | 0.364 | 0.0 |
HOH |
3.798 |
NH1 |
O |
||
ARG | B:168 | B:167 | 82.0 | 0.364 | H | -73.1 | -28.4 | 82.0 | 0.364 | 0.0 |
HOH |
4.177 |
NH1 |
O |
|||||||||
ARG | C:168 | C:167 | 80.0 | 0.356 | H | -70.8 | -24.2 | NA | NA | NA | |||||||||||||
2f3m | 1 | P09488 | 100.0 | 3e-164 |
X-RAY |
2006-04-25 | ARG | A:168 | A:167 | 82.0 | 0.364 | H | -60.3 | -34.4 | 82.0 | 0.364 | 0.0 |
HOH |
6.328 |
NH1 |
O |
||
ARG | B:168 | B:167 | 83.0 | 0.369 | H | -53.6 | -31.9 | 83.0 | 0.369 | 0.0 | |||||||||||||
ARG | C:168 | C:167 | 81.0 | 0.36 | H | -58.5 | -31.9 | NA | NA | NA | |||||||||||||
ARG | D:168 | D:167 | 82.0 | 0.364 | H | -52.7 | -26.7 | NA | NA | NA | |||||||||||||
ARG | E:168 | E:167 | 79.0 | 0.351 | H | -60.9 | -32.6 | NA | NA | NA | |||||||||||||
ARG | F:168 | F:167 | 86.0 | 0.382 | H | -55.6 | -32.3 | NA | NA | NA | |||||||||||||
7beu | 1 | P09488 | 100.0 | 3e-164 |
X-RAY |
2022-01-12 | ARG | A:168 | A:167 | 79.0 | 0.351 | H | -75.1 | -22.5 | 79.0 | 0.351 | 0.0 |
HOH |
2.465 |
O |
O |
||
ARG | B:168 | B:167 | 85.0 | 0.378 | H | -58.5 | -44.6 | NA | NA | NA | |||||||||||||
ARG | C:168 | C:167 | 79.0 | 0.351 | H | -73.0 | -23.3 | NA | NA | NA | |||||||||||||
ARG | D:168 | D:167 | 80.0 | 0.356 | H | -73.7 | -20.6 | 80.0 | 0.356 | 0.0 |
HOH |
2.791 |
O |
O |
|||||||||
1gtu | 1 | P09488 | 100.0 | 2e-163 |
X-RAY |
1999-02-02 | ARG | A:167 | A:167 | 77.0 | 0.342 | H | -66.2 | -37.2 | 77.0 | 0.342 | 0.0 | ||||||
ARG | B:167 | B:167 | 76.0 | 0.338 | H | -68.9 | -36.9 | 76.0 | 0.338 | 0.0 | |||||||||||||
ARG | C:167 | C:167 | 78.0 | 0.347 | H | -69.0 | -37.5 | NA | NA | NA | |||||||||||||
ARG | D:167 | D:167 | 79.0 | 0.351 | H | -74.7 | -35.4 | NA | NA | NA | |||||||||||||
4gtu | 1 | Q03013 | 87.04 | 3e-144 |
X-RAY |
2000-01-14 | ARG | A:167 | A:167 | 66.0 | 0.293 | H | -77.7 | -33.6 | 66.0 | 0.293 | 0.0 | ||||||
ARG | B:167 | B:167 | 81.0 | 0.36 | H | -55.0 | -40.9 | 81.0 | 0.36 | 0.0 | |||||||||||||
ARG | C:167 | C:167 | 74.0 | 0.329 | H | -75.6 | -6.4 | NA | NA | NA | |||||||||||||
ARG | D:167 | D:167 | 84.0 | 0.373 | H | -74.0 | -29.1 | NA | NA | NA | |||||||||||||
ARG | E:167 | E:167 | 73.0 | 0.324 | H | -48.3 | -35.9 | NA | NA | NA | |||||||||||||
ARG | F:167 | F:167 | 88.0 | 0.391 | H | -52.5 | -41.1 | NA | NA | NA | |||||||||||||
ARG | G:167 | G:167 | 65.0 | 0.289 | H | -79.3 | -14.5 | NA | NA | NA | |||||||||||||
ARG | H:167 | H:167 | 67.0 | 0.298 | H | -67.6 | -32.3 | NA | NA | NA | |||||||||||||
2c4j | 1 | P28161 | 84.86 | 3e-141 |
X-RAY |
2005-10-26 | GLN | A:168 | A:168 | 49.0 | 0.272 | H | -67.0 | -32.3 | 49.0 | 0.272 | 0.0 |
HOH |
2.616 |
OE1 |
O |
||
GLN | B:168 | B:168 | 44.0 | 0.244 | H | -63.3 | -37.6 | 44.0 | 0.244 | 0.0 |
HOH |
2.778 |
O |
O |
|||||||||
GLN | C:168 | C:168 | 52.0 | 0.289 | H | -67.2 | -34.1 | NA | NA | NA | |||||||||||||
GLN | D:168 | D:168 | 58.0 | 0.322 | H | -67.7 | -35.3 | NA | NA | NA | |||||||||||||
1xw5 | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
2004-11-30 | GLN | A:167 | A:167 | 36.0 | 0.2 | H | -69.1 | -36.8 | 36.0 | 0.2 | 0.0 |
HOH |
2.660 |
NE2 |
O |
||
GLN | B:167 | B:167 | 43.0 | 0.239 | H | -67.7 | -34.7 | 43.0 | 0.239 | 0.0 |
HOH |
2.830 |
NE2 |
O |
|||||||||
1ykc | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
2005-01-25 | GLN | A:167 | A:167 | 55.0 | 0.306 | H | -67.1 | -34.8 | 55.0 | 0.306 | 0.0 |
HOH |
2.979 |
OE1 |
O |
||
GLN | B:167 | B:167 | 38.0 | 0.211 | H | -63.9 | -39.2 | 38.0 | 0.211 | 0.0 |
HOH |
3.419 |
OE1 |
O |
|||||||||
2ab6 | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
2005-08-02 | GLN | A:167 | A:167 | 37.0 | 0.206 | H | -65.3 | -28.9 | 37.0 | 0.206 | 0.0 |
HOH |
3.172 |
NE2 |
O |
||
GLN | B:167 | B:167 | 40.0 | 0.222 | H | -67.5 | -25.9 | 40.0 | 0.222 | 0.0 |
HOH |
2.742 |
NE2 |
O |
|||||||||
GLN | C:167 | C:167 | 40.0 | 0.222 | H | -68.7 | -24.9 | NA | NA | NA | |||||||||||||
GLN | D:167 | D:167 | 38.0 | 0.211 | H | -67.2 | -25.8 | NA | NA | NA | |||||||||||||
2gtu | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
1999-03-02 | GLN | A:167 | A:167 | 50.0 | 0.278 | H | -64.2 | -30.9 | 50.0 | 0.278 | 0.0 |
HOH |
8.470 |
NE2 |
O |
||
GLN | B:167 | B:167 | 50.0 | 0.278 | H | -68.7 | -21.7 | 50.0 | 0.278 | 0.0 |
HOH |
8.293 |
N |
O |
|||||||||
3gtu | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
1999-07-29 | GLN | A:167 | A:167 | 43.0 | 0.239 | H | -63.7 | -36.5 | 43.0 | 0.239 | 0.0 | ||||||
GLN | C:167 | C:167 | 47.0 | 0.261 | H | -63.5 | -38.9 | NA | NA | NA | |||||||||||||
3gur | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
2009-10-27 | GLN | A:167 | A:167 | 52.0 | 0.289 | H | -63.7 | -43.9 | 52.0 | 0.289 | 0.0 |
HOH |
6.950 |
O |
O |
||
GLN | B:167 | B:167 | 43.0 | 0.239 | H | -69.4 | -39.0 | 43.0 | 0.239 | 0.0 |
HOH |
7.876 |
OE1 |
O |
|||||||||
GLN | C:167 | C:167 | 45.0 | 0.25 | H | -65.7 | -39.0 | NA | NA | NA | |||||||||||||
GLN | D:167 | D:167 | 50.0 | 0.278 | H | -64.7 | -37.7 | NA | NA | NA | |||||||||||||
5hwl | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
2017-11-08 | GLN | A:167 | A:167 | 53.0 | 0.294 | H | -64.9 | -37.1 | 53.0 | 0.294 | 0.0 |
HOH |
3.100 |
NE2 |
O |
||
GLN | B:167 | B:167 | 46.0 | 0.256 | H | -63.0 | -40.8 | 46.0 | 0.256 | 0.0 |
HOH |
3.086 |
NE2 |
O |
|||||||||
1hna | 1 | P28161 | 83.87 | 1e-138 |
X-RAY |
1994-01-31 | GLN | A:167 | A:167 | 42.0 | 0.233 | H | -63.0 | -41.9 | 42.0 | 0.233 | 0.0 |
HOH |
2.811 |
OE1 |
O |
||
1hnb | 1 | P28161 | 83.87 | 1e-138 |
X-RAY |
1994-01-31 | GLN | A:167 | A:167 | 59.0 | 0.328 | H | -72.0 | -39.0 | 59.0 | 0.328 | 0.0 | ||||||
GLN | B:167 | B:167 | 56.0 | 0.311 | H | -80.8 | 0.2 | 56.0 | 0.311 | 0.0 | |||||||||||||
1hnc | 1 | P28161 | 83.87 | 1e-138 |
X-RAY |
1994-01-31 | GLN | A:167 | A:167 | 41.0 | 0.228 | H | -71.4 | -45.5 | 41.0 | 0.228 | 0.0 | ||||||
GLN | B:167 | B:167 | 46.0 | 0.256 | H | -63.4 | -31.7 | 46.0 | 0.256 | 0.0 | |||||||||||||
GLN | C:167 | C:167 | 35.0 | 0.194 | H | -70.8 | -45.8 | NA | NA | NA | |||||||||||||
GLN | D:167 | D:167 | 59.0 | 0.328 | H | -53.9 | -41.4 | NA | NA | NA | |||||||||||||
2dc5 | 1 | 30354091 | 81.57 | 6e-137 |
X-RAY |
2006-06-28 | GLN | A:175 | A:175 | 52.0 | 0.289 | H | -70.0 | -27.9 | 52.0 | 0.289 | 0.0 |
HOH |
2.650 |
OE1 |
O |
||
GLN | B:175 | B:175 | 47.0 | 0.261 | H | -69.6 | -28.9 | 47.0 | 0.261 | 0.0 |
HOH |
2.702 |
NE2 |
O |
|||||||||
1b4p | 1 | P08010 | 80.65 | 6e-136 |
X-RAY |
2003-07-08 | ARG | A:167 | A:167 | 73.0 | 0.324 | H | -77.4 | -22.9 | 73.0 | 0.324 | 0.0 |
SO4 HOH |
2.908 2.566 |
NH1 NH1 |
O2 O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p09488-f1 | 1 | P09488 | 100.0 | 1e-164 | ARG | A:168 | A:168 | 78.0 | 0.347 | H | -59.5 | -35.7 | |
af-q03013-f1 | 1 | Q03013 | 86.7 | 3e-145 | ARG | A:168 | A:168 | 77.0 | 0.342 | H | -60.1 | -34.7 | |
af-p46439-f1 | 1 | P46439 | 87.61 | 6e-142 | ARG | A:168 | A:168 | 77.0 | 0.342 | H | -60.9 | -37.0 | |
af-p28161-f1 | 1 | P28161 | 84.4 | 3e-141 | GLN | A:168 | A:168 | 51.0 | 0.283 | H | -66.7 | -34.4 |