Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 110233137 . A C CCDS809.1:NM_000561.3:c.518aAg>aCg_NP_000552.2:p.173K>T Homo sapiens glutathione S-transferase mu 1 (GSTM1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1xw6 1 P09488 100.0 3e-164 X-RAY
 2004-12-21 LYS A:173 A:172 155.0 0.775 T -88.1 2.5 155.0 0.775 0.0 HOH
 3.154
 O
 O
LYS B:173 B:172 154.0 0.77 T -88.8 3.5 154.0 0.77 0.0 HOH
 2.649
 O
 O
LYS C:173 C:172 150.0 0.75 T -88.8 2.8 NA NA NA
LYS D:173 D:172 150.0 0.75 T -87.7 2.3 NA NA NA
1xwk 1 P09488 100.0 3e-164 X-RAY
 2004-12-21 LYS A:173 A:172 149.0 0.745 T -82.0 -8.7 149.0 0.745 0.0
LYS B:173 B:172 153.0 0.765 T -77.5 -10.2 NA NA NA
LYS C:173 C:172 152.0 0.76 T -78.9 -4.1 152.0 0.76 0.0 HOH
 2.692
 NZ
 O
1yj6 1 P09488 100.0 3e-164 X-RAY
 2005-02-01 LYS A:173 A:172 150.0 0.75 G -75.5 -12.7 150.0 0.75 0.0 HOH
 4.630
 N
 O
LYS B:173 B:172 152.0 0.76 G -76.4 -7.2 152.0 0.76 0.0 HOH
 5.041
 O
 O
LYS C:173 C:172 151.0 0.755 G -74.1 -14.2 NA NA NA
2f3m 1 P09488 100.0 3e-164 X-RAY
 2006-04-25 LYS A:173 A:172 157.0 0.785 T -59.0 16.7 157.0 0.785 0.0
LYS B:173 B:172 160.0 0.8 T -77.1 63.6 160.0 0.8 0.0
LYS C:173 C:172 143.0 0.715 T -90.6 -2.0 NA NA NA
LYS D:173 D:172 143.0 0.715 G -39.1 -26.4 NA NA NA
LYS E:173 E:172 158.0 0.79 G -66.7 47.8 NA NA NA
LYS F:173 F:172 149.0 0.745 T -87.9 -19.0 NA NA NA
7beu 1 P09488 100.0 3e-164 X-RAY
 2022-01-12 LYS A:173 A:172 128.0 0.64 T -89.0 1.6 128.0 0.64 0.0 HOH
 3.058
 O
 O
LYS B:173 B:172 133.0 0.665 T -101.2 15.3 NA NA NA
LYS C:173 C:172 154.0 0.77 T -90.9 4.3 NA NA NA
LYS D:173 D:172 150.0 0.75 T -92.5 -3.1 150.0 0.75 0.0 HOH
 2.971
 O
 O
1gtu 1 P09488 100.0 2e-163 X-RAY
 1999-02-02 LYS A:172 A:172 155.0 0.775 T -92.6 -11.1 155.0 0.775 0.0
LYS B:172 B:172 157.0 0.785 T -93.6 -6.8 157.0 0.785 0.0
LYS C:172 C:172 153.0 0.765 T -102.0 -8.9 NA NA NA
LYS D:172 D:172 154.0 0.77 T -95.8 -5.0 NA NA NA
4gtu 1 Q03013 87.04 3e-144 X-RAY
 2000-01-14 ASN A:172 A:172 102.0 0.637 T -108.9 -0.6 102.0 0.637 0.0
ASN B:172 B:172 119.0 0.744 T -74.1 57.7 119.0 0.744 0.0
ASN C:172 C:172 102.0 0.637 G -72.7 34.3 NA NA NA
ASN D:172 D:172 82.0 0.512 T -148.4 -1.4 NA NA NA
ASN E:172 E:172 104.0 0.65 G -61.9 -17.9 NA NA NA
ASN F:172 F:172 106.0 0.662 H -63.1 -51.2 NA NA NA
ASN G:172 G:172 108.0 0.675 T -90.2 -4.9 NA NA NA
ASN H:172 H:172 108.0 0.675 H -69.4 -23.5 NA NA NA
2c4j 1 P28161 84.86 3e-141 X-RAY
 2005-10-26 SER A:173 A:173 72.0 0.626 T -93.8 2.6 72.0 0.626 0.0 HOH
 2.719
 O
 O
SER B:173 B:173 65.0 0.565 T -91.6 2.6 65.0 0.565 0.0 HOH
 2.655
 OG
 O
SER C:173 C:173 63.0 0.548 T -95.5 2.1 NA NA NA
SER D:173 D:173 58.0 0.504 T -92.2 3.8 NA NA NA
1xw5 1 P28161 84.33 6e-140 X-RAY
 2004-11-30 SER A:172 A:172 64.0 0.557 T -87.6 -5.4 64.0 0.557 0.0 HOH
 3.166
 O
 O
SER B:172 B:172 60.0 0.522 T -94.3 -2.5 60.0 0.522 0.0 HOH
 2.793
 OG
 O
1ykc 1 P28161 84.33 6e-140 X-RAY
 2005-01-25 SER A:172 A:172 60.0 0.522 T -83.5 -14.8 60.0 0.522 0.0 HOH
 2.642
 OG
 O
SER B:172 B:172 61.0 0.53 G -80.9 -8.2 61.0 0.53 0.0 HOH
 3.258
 N
 O
2ab6 1 P28161 84.33 6e-140 X-RAY
 2005-08-02 SER A:172 A:172 61.0 0.53 T -84.2 -1.0 61.0 0.53 0.0 HOH
 3.848
 C
 O
SER B:172 B:172 62.0 0.539 T -83.1 -1.9 62.0 0.539 0.0 HOH
 3.321
 O
 O
SER C:172 C:172 61.0 0.53 T -82.3 -2.4 NA NA NA
SER D:172 D:172 63.0 0.548 T -82.2 -6.9 NA NA NA
2gtu 1 P28161 84.33 6e-140 X-RAY
 1999-03-02 SER A:172 A:172 60.0 0.522 T -88.0 0.9 60.0 0.522 0.0
SER B:172 B:172 65.0 0.565 T -90.6 -3.0 65.0 0.565 0.0 HOH
 9.678
 N
 O
3gtu 1 P28161 84.33 6e-140 X-RAY
 1999-07-29 SER A:172 A:172 65.0 0.565 G -80.0 -4.5 65.0 0.565 0.0
SER C:172 C:172 61.0 0.53 G -75.5 -14.8 NA NA NA
3gur 1 P28161 84.33 6e-140 X-RAY
 2009-10-27 SER A:172 A:172 60.0 0.522 T -106.4 -1.1 60.0 0.522 0.0 HOH
 2.959
 O
 O
SER B:172 B:172 60.0 0.522 T -102.4 12.1 60.0 0.522 0.0
SER C:172 C:172 60.0 0.522 T -84.6 -5.7 NA NA NA
SER D:172 D:172 63.0 0.548 T -98.9 12.9 NA NA NA
5hwl 1 P28161 84.33 6e-140 X-RAY
 2017-11-08 SER A:172 A:172 67.0 0.583 T -94.4 3.7 67.0 0.583 0.0 HOH
 2.928
 O
 O
SER B:172 B:172 60.0 0.522 T -98.5 -1.1 60.0 0.522 0.0 HOH
 2.766
 O
 O
1hna 1 P28161 83.87 1e-138 X-RAY
 1994-01-31 SER A:172 A:172 68.0 0.591 H -62.0 -22.3 68.0 0.591 0.0 HOH
 3.202
 O
 O
1hnb 1 P28161 83.87 1e-138 X-RAY
 1994-01-31 SER A:172 A:172 75.0 0.652 G -73.2 -14.3 75.0 0.652 0.0
SER B:172 B:172 54.0 0.47 T -93.2 -12.2 54.0 0.47 0.0
1hnc 1 P28161 83.87 1e-138 X-RAY
 1994-01-31 SER A:172 A:172 78.0 0.678 G -61.8 -22.6 78.0 0.678 0.0
SER B:172 B:172 70.0 0.609 G -60.6 -27.6 70.0 0.609 0.0
SER C:172 C:172 81.0 0.704 H -49.4 -17.8 NA NA NA
SER D:172 D:172 66.0 0.574 T -80.0 -20.6 NA NA NA
2dc5 1 30354091 81.57 6e-137 X-RAY
 2006-06-28 LYS A:180 A:180 134.0 0.67 T -100.2 7.4 134.0 0.67 0.0 HOH
 2.668
 O
 O
LYS B:180 B:180 123.0 0.615 T 73.8 -1.0 123.0 0.615 0.0 HOH
 2.842
 O
 O
1b4p 1 P08010 80.65 6e-136 X-RAY
 2003-07-08 LYS A:172 A:172 147.0 0.735 T -92.1 -4.2 147.0 0.735 0.0 SO4
HOH
 7.359
2.541
 N
NZ
 O3
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09488-f1 1 P09488 100.0 1e-164 LYS A:173 A:173 151.0 0.755 T -95.7 1.6
af-q03013-f1 1 Q03013 86.7 3e-145 ASN A:173 A:173 105.0 0.656 T -96.0 3.7
af-p46439-f1 1 P46439 87.61 6e-142 LYS A:173 A:173 151.0 0.755 T -94.7 0.0
af-p28161-f1 1 P28161 84.4 3e-141 SER A:173 A:173 63.0 0.548 T -87.2 -5.3