Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 110235865 | . | G | A | CCDS809.1:NM_000561.3:c.605cGc>cAc_NP_000552.2:p.202R>H | Homo sapiens glutathione S-transferase mu 1 (GSTM1), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1xw6 | 1 | P09488 | 100.0 | 3e-164 |
X-RAY |
2004-12-21 | ARG | A:202 | A:201 | 114.0 | 0.507 | S | -72.3 | -34.1 | 114.0 | 0.507 | 0.0 |
HOH |
2.752 |
NH1 |
O |
||
ARG | B:202 | B:201 | 115.0 | 0.511 | S | -72.3 | -35.0 | 115.0 | 0.511 | 0.0 |
HOH |
2.828 |
NH1 |
O |
|||||||||
ARG | C:202 | C:201 | 117.0 | 0.52 | S | -73.2 | -34.3 | NA | NA | NA | |||||||||||||
ARG | D:202 | D:201 | 117.0 | 0.52 | S | -71.8 | -35.9 | NA | NA | NA | |||||||||||||
1xwk | 1 | P09488 | 100.0 | 3e-164 |
X-RAY |
2004-12-21 | ARG | A:202 | A:201 | 115.0 | 0.511 | -72.3 | -31.1 | 115.0 | 0.511 | 0.0 |
HOH |
2.907 |
O |
O |
|||
ARG | B:202 | B:201 | 121.0 | 0.538 | S | -66.5 | -35.2 | NA | NA | NA | |||||||||||||
ARG | C:202 | C:201 | 117.0 | 0.52 | S | -68.2 | -34.8 | 117.0 | 0.52 | 0.0 |
HOH |
2.859 |
O |
O |
|||||||||
1yj6 | 1 | P09488 | 100.0 | 3e-164 |
X-RAY |
2005-02-01 | ARG | A:202 | A:201 | 113.0 | 0.502 | S | -74.0 | -28.4 | 113.0 | 0.502 | 0.0 |
HOH |
3.861 |
CD |
O |
||
ARG | B:202 | B:201 | 113.0 | 0.502 | S | -71.0 | -30.1 | 113.0 | 0.502 | 0.0 |
HOH |
3.607 |
NE |
O |
|||||||||
ARG | C:202 | C:201 | 111.0 | 0.493 | S | -70.9 | -31.8 | NA | NA | NA | |||||||||||||
2f3m | 1 | P09488 | 100.0 | 3e-164 |
X-RAY |
2006-04-25 | ARG | A:202 | A:201 | 116.0 | 0.516 | T | -81.5 | -24.4 | 116.0 | 0.516 | 0.0 |
HOH |
9.779 |
O |
O |
||
ARG | B:202 | B:201 | 113.0 | 0.502 | T | -84.6 | -23.0 | 113.0 | 0.502 | 0.0 |
HOH |
6.221 |
O |
O |
|||||||||
ARG | C:202 | C:201 | 113.0 | 0.502 | T | -83.2 | -24.8 | NA | NA | NA | |||||||||||||
ARG | D:202 | D:201 | 112.0 | 0.498 | T | -82.6 | -23.7 | NA | NA | NA | |||||||||||||
ARG | E:202 | E:201 | 115.0 | 0.511 | T | -83.7 | -22.2 | NA | NA | NA | |||||||||||||
ARG | F:202 | F:201 | 112.0 | 0.498 | T | -83.5 | -21.9 | NA | NA | NA | |||||||||||||
7beu | 1 | P09488 | 100.0 | 3e-164 |
X-RAY |
2022-01-12 | ARG | A:202 | A:201 | 120.0 | 0.533 | T | -83.7 | -14.8 | 120.0 | 0.533 | 0.0 |
HOH |
2.720 |
NH2 |
O |
||
ARG | B:202 | B:201 | 120.0 | 0.533 | T | -81.9 | -16.3 | NA | NA | NA | |||||||||||||
ARG | C:202 | C:201 | 119.0 | 0.529 | T | -75.3 | -14.8 | NA | NA | NA | |||||||||||||
ARG | D:202 | D:201 | 124.0 | 0.551 | T | -73.9 | -15.3 | 124.0 | 0.551 | 0.0 |
HOH |
2.441 |
O |
O |
|||||||||
1gtu | 1 | P09488 | 100.0 | 2e-163 |
X-RAY |
1999-02-02 | ARG | A:201 | A:201 | 127.0 | 0.564 | S | -79.5 | -31.4 | 127.0 | 0.564 | 0.0 |
HOH |
4.273 |
O |
O |
||
ARG | B:201 | B:201 | 133.0 | 0.591 | S | -74.4 | -32.7 | 133.0 | 0.591 | 0.0 |
HOH |
3.954 |
O |
O |
|||||||||
ARG | C:201 | C:201 | 131.0 | 0.582 | T | -85.5 | -23.8 | NA | NA | NA | |||||||||||||
ARG | D:201 | D:201 | 133.0 | 0.591 | S | -82.0 | -29.2 | NA | NA | NA | |||||||||||||
4gtu | 1 | Q03013 | 87.04 | 3e-144 |
X-RAY |
2000-01-14 | ARG | A:201 | A:201 | 96.0 | 0.427 | T | -102.2 | 2.2 | 96.0 | 0.427 | 0.0 | ||||||
ARG | B:201 | B:201 | 117.0 | 0.52 | T | -93.8 | 33.5 | 117.0 | 0.52 | 0.0 | |||||||||||||
ARG | C:201 | C:201 | 111.0 | 0.493 | T | -110.2 | -13.6 | NA | NA | NA | |||||||||||||
ARG | D:201 | D:201 | 103.0 | 0.458 | T | -95.4 | -3.8 | NA | NA | NA | |||||||||||||
ARG | E:201 | E:201 | 127.0 | 0.564 | T | -91.4 | -4.0 | NA | NA | NA | |||||||||||||
ARG | F:201 | F:201 | 101.0 | 0.449 | T | -95.5 | -12.6 | NA | NA | NA | |||||||||||||
ARG | G:201 | G:201 | 90.0 | 0.4 | T | -93.6 | -20.1 | NA | NA | NA | |||||||||||||
ARG | H:201 | H:201 | 122.0 | 0.542 | T | -81.3 | -1.2 | NA | NA | NA | |||||||||||||
2c4j | 1 | P28161 | 84.86 | 3e-141 |
X-RAY |
2005-10-26 | ARG | A:202 | A:202 | 99.0 | 0.44 | T | -77.4 | -18.8 | 99.0 | 0.44 | 0.0 |
HOH |
2.677 |
O |
O |
||
ARG | B:202 | B:202 | 109.0 | 0.484 | T | -80.0 | -20.2 | 109.0 | 0.484 | 0.0 |
HOH |
2.807 |
O |
O |
|||||||||
ARG | C:202 | C:202 | 121.0 | 0.538 | T | -86.5 | -6.4 | NA | NA | NA | |||||||||||||
ARG | D:202 | D:202 | 97.0 | 0.431 | T | -92.0 | -16.3 | NA | NA | NA | |||||||||||||
1xw5 | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
2004-11-30 | ARG | A:201 | A:201 | 109.0 | 0.484 | S | -73.2 | -23.1 | 109.0 | 0.484 | 0.0 |
HOH |
2.620 |
O |
O |
||
ARG | B:201 | B:201 | 106.0 | 0.471 | T | -74.5 | -19.1 | 106.0 | 0.471 | 0.0 |
HOH |
2.741 |
O |
O |
|||||||||
1ykc | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
2005-01-25 | ARG | A:201 | A:201 | 113.0 | 0.502 | S | -62.8 | -32.5 | 113.0 | 0.502 | 0.0 |
HOH |
2.773 |
O |
O |
||
ARG | B:201 | B:201 | 114.0 | 0.507 | T | -72.6 | -18.8 | 114.0 | 0.507 | 0.0 |
HOH |
3.088 |
O |
O |
|||||||||
2ab6 | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
2005-08-02 | ARG | A:201 | A:201 | 123.0 | 0.547 | S | -63.2 | -48.5 | 123.0 | 0.547 | 0.0 |
HOH |
3.363 |
CD |
O |
||
ARG | B:201 | B:201 | 116.0 | 0.516 | S | -74.2 | -35.0 | 116.0 | 0.516 | 0.0 |
HOH |
3.343 |
NH1 |
O |
|||||||||
ARG | C:201 | C:201 | 118.0 | 0.524 | S | -68.7 | -38.1 | NA | NA | NA | |||||||||||||
ARG | D:201 | D:201 | 117.0 | 0.52 | T | -68.6 | -36.0 | NA | NA | NA | |||||||||||||
2gtu | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
1999-03-02 | ARG | A:201 | A:201 | 172.0 | 0.764 | T | -107.8 | 13.6 | 172.0 | 0.764 | 0.0 |
HOH |
3.261 |
O |
O |
||
ARG | B:201 | B:201 | 171.0 | 0.76 | T | -98.8 | 11.2 | 171.0 | 0.76 | 0.0 |
HOH |
5.118 |
O |
O |
|||||||||
3gtu | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
1999-07-29 | ARG | A:201 | A:201 | 120.0 | 0.533 | T | -79.1 | 11.2 | 120.0 | 0.533 | 0.0 | ||||||
ARG | C:201 | C:201 | 117.0 | 0.52 | T | -78.2 | 10.5 | NA | NA | NA | |||||||||||||
3gur | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
2009-10-27 | ARG | A:201 | A:201 | 118.0 | 0.524 | S | -77.3 | -14.3 | 118.0 | 0.524 | 0.0 |
HOH |
6.096 |
O |
O |
||
ARG | B:201 | B:201 | 120.0 | 0.533 | T | -71.0 | -24.7 | 120.0 | 0.533 | 0.0 |
HOH |
3.175 |
CG |
O |
|||||||||
ARG | C:201 | C:201 | 117.0 | 0.52 | T | -71.3 | -19.6 | NA | NA | NA | |||||||||||||
ARG | D:201 | D:201 | 108.0 | 0.48 | S | -70.1 | -19.9 | NA | NA | NA | |||||||||||||
5hwl | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
2017-11-08 | ARG | A:201 | A:201 | 116.0 | 0.516 | T | -91.7 | -10.5 | 116.0 | 0.516 | 0.0 |
HOH |
3.212 |
NH1 |
O |
||
ARG | B:201 | B:201 | 114.0 | 0.507 | T | -71.2 | -17.4 | 114.0 | 0.507 | 0.0 |
HOH |
3.950 |
CB |
O |
|||||||||
1hna | 1 | P28161 | 83.87 | 1e-138 |
X-RAY |
1994-01-31 | ARG | A:201 | A:201 | 162.0 | 0.72 | T | -80.0 | -27.8 | 162.0 | 0.72 | 0.0 |
HOH |
3.267 |
CD |
O |
||
1hnb | 1 | P28161 | 83.87 | 1e-138 |
X-RAY |
1994-01-31 | ARG | A:201 | A:201 | 190.0 | 0.844 | -119.7 | 107.8 | 190.0 | 0.844 | 0.0 | |||||||
ARG | B:201 | B:201 | 161.0 | 0.716 | S | -104.7 | 18.0 | 161.0 | 0.716 | 0.0 | |||||||||||||
1hnc | 1 | P28161 | 83.87 | 1e-138 |
X-RAY |
1994-01-31 | ARG | A:201 | A:201 | 100.0 | 0.444 | S | -75.4 | 58.4 | 100.0 | 0.444 | 0.0 | ||||||
ARG | B:201 | B:201 | 124.0 | 0.551 | T | 174.5 | 9.3 | 124.0 | 0.551 | 0.0 | |||||||||||||
ARG | C:201 | C:201 | 118.0 | 0.524 | S | -50.0 | -31.3 | NA | NA | NA | |||||||||||||
ARG | D:201 | D:201 | 126.0 | 0.56 | S | -71.2 | -46.6 | NA | NA | NA | |||||||||||||
2dc5 | 1 | 30354091 | 81.57 | 6e-137 |
X-RAY |
2006-06-28 | ARG | A:209 | A:209 | 101.0 | 0.449 | T | -78.8 | -20.3 | 101.0 | 0.449 | 0.0 |
HOH |
3.184 |
NH2 |
O |
||
ARG | B:209 | B:209 | 96.0 | 0.427 | T | -81.0 | -16.9 | 96.0 | 0.427 | 0.0 |
HOH |
2.832 |
NH2 |
O |
|||||||||
1b4p | 1 | P08010 | 80.65 | 6e-136 |
X-RAY |
2003-07-08 | ARG | A:201 | A:201 | 111.0 | 0.493 | T | -86.6 | -13.3 | 111.0 | 0.493 | 0.0 |
SO4 GPS HOH |
6.457 3.675 3.095 |
O NH2 NH2 |
O3 O11 O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p09488-f1 | 1 | P09488 | 100.0 | 1e-164 | ARG | A:202 | A:202 | 126.0 | 0.56 | T | -77.6 | -23.6 | |
af-q03013-f1 | 1 | Q03013 | 86.7 | 3e-145 | ARG | A:202 | A:202 | 126.0 | 0.56 | T | -76.6 | -22.8 | |
af-p46439-f1 | 1 | P46439 | 87.61 | 6e-142 | GLN | A:202 | A:202 | 105.0 | 0.583 | T | -81.2 | -19.4 | |
af-p28161-f1 | 1 | P28161 | 84.4 | 3e-141 | ARG | A:202 | A:202 | 118.0 | 0.524 | T | -75.2 | -24.4 |