Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 110235888 . T A CCDS809.1:NM_000561.3:c.628Tca>Aca_NP_000552.2:p.210S>T Homo sapiens glutathione S-transferase mu 1 (GSTM1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1xw6 1 P09488 100.0 3e-164 X-RAY
 2004-12-21 SER A:210 A:209 7.0 0.061 -81.0 173.1 7.0 0.061 0.0 GSH
HOH
 6.982
3.265
 OG
C
 SG2
O
SER B:210 B:209 7.0 0.061 -78.8 170.8 7.0 0.061 0.0 GSH
HOH
 6.899
3.279
 CB
C
 CB2
O
SER C:210 C:209 7.0 0.061 -81.4 172.8 NA NA NA
SER D:210 D:209 6.0 0.052 -79.7 173.3 NA NA NA
1xwk 1 P09488 100.0 3e-164 X-RAY
 2004-12-21 SER A:210 A:209 5.0 0.043 -74.0 178.8 5.0 0.043 0.0 GDN
HOH
 6.102
3.623
 OG
C
 C6'
O
SER B:210 B:209 6.0 0.052 -74.0 174.6 NA NA NA
SER C:210 C:209 5.0 0.043 -71.9 179.0 5.0 0.043 0.0 GDN
HOH
 5.922
3.940
 OG
OG
 C5'
O
1yj6 1 P09488 100.0 3e-164 X-RAY
 2005-02-01 SER A:210 A:209 8.0 0.07 -81.2 179.6 8.0 0.07 0.0 ZN
GSH
HOH
 6.074
7.315
3.962
 N
CB
C
 ZN
O2
O
SER B:210 B:209 7.0 0.061 -80.7 179.3 7.0 0.061 0.0 ZN
GSH
HOH
 6.379
7.241
4.561
 N
CB
N
 ZN
CB2
O
SER C:210 C:209 9.0 0.078 -83.2 177.8 NA NA NA
2f3m 1 P09488 100.0 3e-164 X-RAY
 2006-04-25 SER A:210 A:209 6.0 0.052 -69.1 176.3 6.0 0.052 0.0 GTD
HOH
 4.211
4.114
 N
OG
 O21
O
SER B:210 B:209 6.0 0.052 -72.4 175.9 6.0 0.052 0.0 GTD
HOH
 4.174
5.433
 N
CA
 O21
O
SER C:210 C:209 6.0 0.052 -66.7 174.7 NA NA NA
SER D:210 D:209 5.0 0.043 -67.3 174.6 NA NA NA
SER E:210 E:209 8.0 0.07 -68.0 175.7 NA NA NA
SER F:210 F:209 6.0 0.052 -71.5 175.0 NA NA NA
7beu 1 P09488 100.0 3e-164 X-RAY
 2022-01-12 SER A:210 A:209 7.0 0.061 -77.4 174.7 7.0 0.061 0.0 HOH
 3.258
 C
 O
SER B:210 B:209 9.0 0.078 -79.8 172.2 NA NA NA
SER C:210 C:209 11.0 0.096 -81.5 173.8 NA NA NA
SER D:210 D:209 6.0 0.052 -76.9 173.1 6.0 0.052 0.0 HOH
 3.091
 C
 O
1gtu 1 P09488 100.0 2e-163 X-RAY
 1999-02-02 SER A:209 A:209 13.0 0.113 -78.3 170.6 13.0 0.113 0.0 HOH
 5.491
 N
 O
SER B:209 B:209 16.0 0.139 -68.4 167.8 16.0 0.139 0.0 HOH
 2.969
 OG
 O
SER C:209 C:209 15.0 0.13 -73.4 161.6 NA NA NA
SER D:209 D:209 16.0 0.139 -68.7 167.7 NA NA NA
4gtu 1 Q03013 87.04 3e-144 X-RAY
 2000-01-14 THR A:209 A:209 13.0 0.093 -62.9 166.7 13.0 0.093 0.0
THR B:209 B:209 8.0 0.057 -72.2 166.8 8.0 0.057 0.0
THR C:209 C:209 13.0 0.093 -61.9 167.9 NA NA NA
THR D:209 D:209 20.0 0.143 -60.7 162.6 NA NA NA
THR E:209 E:209 15.0 0.107 -72.0 161.6 NA NA NA
THR F:209 F:209 13.0 0.093 -74.6 175.3 NA NA NA
THR G:209 G:209 9.0 0.064 -69.1 164.8 NA NA NA
THR H:209 H:209 14.0 0.1 -66.8 160.7 NA NA NA
2c4j 1 P28161 84.86 3e-141 X-RAY
 2005-10-26 SER A:210 A:210 9.0 0.078 -78.8 179.8 9.0 0.078 0.0 GSO
HOH
 3.454
3.110
 CB
C
 CG2
O
SER B:210 B:210 10.0 0.087 -80.8 174.3 10.0 0.087 0.0 GSO
HOH
 3.514
2.655
 CB
OG
 CG2
O
SER C:210 C:210 12.0 0.104 -80.9 177.2 NA NA NA
SER D:210 D:210 9.0 0.078 -79.7 178.0 NA NA NA
1xw5 1 P28161 84.33 6e-140 X-RAY
 2004-11-30 THR A:209 A:209 16.0 0.114 -76.2 169.1 16.0 0.114 0.0 GSH
HOH
 5.070
2.719
 CG2
OG1
 CB2
O
THR B:209 B:209 19.0 0.136 -74.2 166.8 19.0 0.136 0.0 GSH
HOH
 5.026
2.847
 CG2
OG1
 CB2
O
1ykc 1 P28161 84.33 6e-140 X-RAY
 2005-01-25 THR A:209 A:209 13.0 0.093 -86.2 173.4 13.0 0.093 0.0 GDS
HOH
 3.846
2.810
 CG2
OG1
 SG2
O
THR B:209 B:209 13.0 0.093 -83.5 175.0 13.0 0.093 0.0 GDS
HOH
 3.895
3.110
 CG2
C
 SG2
O
2ab6 1 P28161 84.33 6e-140 X-RAY
 2005-08-02 THR A:209 A:209 14.0 0.1 -73.9 165.2 14.0 0.1 0.0 GSM
HOH
 4.212
6.068
 CG2
CA
 C4
O
THR B:209 B:209 17.0 0.121 -74.5 165.9 17.0 0.121 0.0 GSM
HOH
 4.300
3.051
 CG2
OG1
 C4
O
THR C:209 C:209 17.0 0.121 -75.7 167.1 NA NA NA
THR D:209 D:209 17.0 0.121 -77.8 168.8 NA NA NA
2gtu 1 P28161 84.33 6e-140 X-RAY
 1999-03-02 THR A:209 A:209 16.0 0.114 -69.4 175.0 16.0 0.114 0.0 HOH
 6.155
 CG2
 O
THR B:209 B:209 16.0 0.114 -73.5 175.4 16.0 0.114 0.0 HOH
 3.549
 CA
 O
3gtu 1 P28161 84.33 6e-140 X-RAY
 1999-07-29 THR A:209 A:209 17.0 0.121 -74.6 156.7 17.0 0.121 0.0 HOH
 4.516
 CG2
 O
THR C:209 C:209 15.0 0.107 -74.7 156.8 NA NA NA
3gur 1 P28161 84.33 6e-140 X-RAY
 2009-10-27 THR A:209 A:209 14.0 0.1 -79.0 174.1 14.0 0.1 0.0 BYG
HOH
 3.137
3.172
 CG2
C
 S1
O
THR B:209 B:209 13.0 0.093 -83.4 169.0 13.0 0.093 0.0 GSH
HOH
 5.743
6.798
 CG2
CG2
 CB2
O
THR C:209 C:209 16.0 0.114 -84.9 170.7 NA NA NA
THR D:209 D:209 17.0 0.121 -75.5 178.8 NA NA NA
5hwl 1 P28161 84.33 6e-140 X-RAY
 2017-11-08 THR A:209 A:209 19.0 0.136 -73.1 169.0 19.0 0.136 0.0 GSH
NNE
HOH
 5.056
4.150
2.471
 CG2
CG2
OG1
 CB2
CBN
O
THR B:209 B:209 19.0 0.136 -74.4 168.1 19.0 0.136 0.0 GSH
NNE
HOH
 5.147
4.584
2.581
 CG2
CG2
OG1
 CB2
CAL
O
1hna 1 P28161 83.87 1e-138 X-RAY
 1994-01-31 THR A:209 A:209 0.0 0.0 T 51.7 -178.9 0.0 0.0 0.0 GDN
HOH
 9.880
5.207
 CG2
OG1
 CB2
O
1hnb 1 P28161 83.87 1e-138 X-RAY
 1994-01-31 THR A:209 A:209 7.0 0.05 -45.2 -41.5 7.0 0.05 0.0
THR B:209 B:209 11.0 0.079 -41.8 144.9 11.0 0.079 0.0 GDN
 5.980
 CG2
 O2
1hnc 1 P28161 83.87 1e-138 X-RAY
 1994-01-31 THR A:209 A:209 37.0 0.264 -146.5 138.0 37.0 0.264 0.0 GDN
 7.566
 CG2
 SG2
THR B:209 B:209 9.0 0.064 H -53.4 140.2 9.0 0.064 0.0
THR C:209 C:209 31.0 0.221 T -37.2 103.8 NA NA NA
THR D:209 D:209 59.0 0.421 -68.7 99.2 NA NA NA
2dc5 1 30354091 81.57 6e-137 X-RAY
 2006-06-28 THR A:217 A:217 15.0 0.107 -75.0 170.7 15.0 0.107 0.0 HOH
 2.570
 OG1
 O
THR B:217 B:217 7.0 0.05 -73.9 174.4 7.0 0.05 0.0 HOH
 3.057
 C
 O
1b4p 1 P08010 80.65 6e-136 X-RAY
 2003-07-08 ALA A:209 A:209 12.0 0.104 -66.9 156.6 12.0 0.104 0.0 GPS
HOH
 3.145
6.117
 CB
CB
 CD5
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09488-f1 1 P09488 100.0 1e-164 SER A:210 A:210 10.0 0.087 -70.4 167.0
af-q03013-f1 1 Q03013 86.7 3e-145 THR A:210 A:210 16.0 0.114 -68.0 164.5
af-p46439-f1 1 P46439 87.61 6e-142 GLY A:210 A:210 7.0 0.093 -70.8 162.9
af-p28161-f1 1 P28161 84.4 3e-141 THR A:210 A:210 14.0 0.1 -70.0 167.2