Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 110256127 | . | G | A | CCDS811.1:NM_000851.3:c.199Gct>Act_NP_000842.2:p.67A>T | Homo sapiens glutathione S-transferase mu 5 (GSTM5), mRNA. |
---|---|---|---|---|---|---|---|
|
|
|
|
PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1xw6 | 1 | P09488 | 87.61 | 1e-141 |
X-RAY |
2004-12-21 | ALA | A:67 | A:66 | 95.0 | 0.826 | T | -71.3 | -22.1 | 95.0 | 0.826 | 0.0 |
HOH |
2.634 |
O |
O |
||
ALA | B:67 | B:66 | 92.0 | 0.8 | T | -71.5 | -23.8 | 92.0 | 0.8 | 0.0 |
HOH |
2.620 |
O |
O |
|||||||||
ALA | C:67 | C:66 | 94.0 | 0.817 | T | -72.6 | -23.7 | NA | NA | NA | |||||||||||||
ALA | D:67 | D:66 | 93.0 | 0.809 | T | -70.9 | -25.5 | NA | NA | NA | |||||||||||||
1xwk | 1 | P09488 | 87.61 | 1e-141 |
X-RAY |
2004-12-21 | ALA | A:67 | A:66 | 94.0 | 0.817 | T | -91.7 | -9.4 | 94.0 | 0.817 | 0.0 |
HOH |
4.399 |
O |
O |
||
ALA | B:67 | B:66 | 91.0 | 0.791 | T | -76.0 | -19.8 | NA | NA | NA | |||||||||||||
ALA | C:67 | C:66 | 92.0 | 0.8 | T | -83.2 | -14.0 | 92.0 | 0.8 | 0.0 |
HOH |
3.819 |
O |
O |
|||||||||
1yj6 | 1 | P09488 | 87.61 | 1e-141 |
X-RAY |
2005-02-01 | ALA | A:67 | A:66 | 90.0 | 0.783 | T | -91.1 | -6.8 | 90.0 | 0.783 | 0.0 |
HOH |
4.081 |
O |
O |
||
ALA | B:67 | B:66 | 91.0 | 0.791 | T | -85.7 | -11.0 | 91.0 | 0.791 | 0.0 |
HOH |
4.091 |
O |
O |
|||||||||
ALA | C:67 | C:66 | 91.0 | 0.791 | T | -82.8 | -13.9 | NA | NA | NA | |||||||||||||
2f3m | 1 | P09488 | 87.61 | 1e-141 |
X-RAY |
2006-04-25 | ALA | A:67 | A:66 | 91.0 | 0.791 | T | -69.4 | -32.0 | 91.0 | 0.791 | 0.0 | ||||||
ALA | B:67 | B:66 | 88.0 | 0.765 | T | -70.5 | -32.1 | 87.0 | 0.757 | 0.008 |
A:P09488:0.009 |
||||||||||||
ALA | C:67 | C:66 | 89.0 | 0.774 | T | -63.8 | -35.6 | NA | NA | NA | |||||||||||||
ALA | D:67 | D:66 | 88.0 | 0.765 | T | -64.8 | -36.0 | NA | NA | NA | |||||||||||||
ALA | E:67 | E:66 | 89.0 | 0.774 | T | -67.1 | -34.9 | NA | NA | NA | |||||||||||||
ALA | F:67 | F:66 | 90.0 | 0.783 | T | -68.6 | -32.9 | NA | NA | NA | |||||||||||||
7beu | 1 | P09488 | 87.61 | 1e-141 |
X-RAY |
2022-01-12 | ALA | A:67 | A:66 | 93.0 | 0.809 | T | -75.0 | -14.5 | 93.0 | 0.809 | 0.0 |
HOH |
2.988 |
O |
O |
||
ALA | B:67 | B:66 | 98.0 | 0.852 | T | -74.7 | -12.7 | NA | NA | NA | |||||||||||||
ALA | C:67 | C:66 | 92.0 | 0.8 | T | -75.0 | -15.5 | NA | NA | NA | |||||||||||||
ALA | D:67 | D:66 | 90.0 | 0.783 | T | -79.3 | -12.5 | 90.0 | 0.783 | 0.0 |
HOH |
4.059 |
O |
O |
|||||||||
1gtu | 1 | P09488 | 87.56 | 1e-140 |
X-RAY |
1999-02-02 | ALA | A:66 | A:66 | 91.0 | 0.791 | T | -89.7 | 2.9 | 91.0 | 0.791 | 0.0 |
HOH |
9.033 |
O |
O |
||
ALA | B:66 | B:66 | 92.0 | 0.8 | T | -91.2 | -2.9 | 92.0 | 0.8 | 0.0 | |||||||||||||
ALA | C:66 | C:66 | 94.0 | 0.817 | T | -76.2 | -11.6 | NA | NA | NA | |||||||||||||
ALA | D:66 | D:66 | 94.0 | 0.817 | T | -80.0 | -17.7 | NA | NA | NA | |||||||||||||
2c4j | 1 | P28161 | 81.19 | 8e-134 |
X-RAY |
2005-10-26 | THR | A:67 | A:67 | 124.0 | 0.886 | T | -81.9 | -20.9 | 116.0 | 0.829 | 0.057 |
B:P28161:0.057 |
HOH |
3.031 |
N |
O |
|
THR | B:67 | B:67 | 125.0 | 0.893 | T | -90.7 | -11.5 | 118.0 | 0.843 | 0.05 |
A:P28161:0.05 |
HOH |
3.360 |
O |
O |
||||||||
THR | C:67 | C:67 | 123.0 | 0.879 | T | -65.8 | -21.6 | NA | NA | NA | |||||||||||||
THR | D:67 | D:67 | 133.0 | 0.95 | T | -79.4 | -10.0 | NA | NA | NA | |||||||||||||
2dc5 | 1 | 30354091 | 81.57 | 1e-133 |
X-RAY |
2006-06-28 | SER | A:74 | A:74 | 100.0 | 0.87 | T | -78.3 | -9.7 | 95.0 | 0.826 | 0.044 |
B:30354091:0.043 |
HOH |
3.095 |
N |
O |
|
SER | B:74 | B:74 | 104.0 | 0.904 | T | -74.9 | -8.9 | 98.0 | 0.852 | 0.052 |
A:30354091:0.052 |
HOH |
2.781 |
O |
O |
||||||||
4gtu | 1 | Q03013 | 83.33 | 2e-133 |
X-RAY |
2000-01-14 | ALA | A:66 | A:66 | 88.0 | 0.765 | S | -110.6 | 37.2 | 88.0 | 0.765 | 0.0 | ||||||
ALA | B:66 | B:66 | 103.0 | 0.896 | S | -82.3 | 31.6 | 103.0 | 0.896 | 0.0 | |||||||||||||
ALA | C:66 | C:66 | 91.0 | 0.791 | T | -113.6 | -21.5 | NA | NA | NA | |||||||||||||
ALA | D:66 | D:66 | 94.0 | 0.817 | T | -99.6 | -3.9 | NA | NA | NA | |||||||||||||
ALA | E:66 | E:66 | 93.0 | 0.809 | T | -88.6 | -5.7 | NA | NA | NA | |||||||||||||
ALA | F:66 | F:66 | 89.0 | 0.774 | T | -93.9 | -5.1 | NA | NA | NA | |||||||||||||
ALA | G:66 | G:66 | 93.0 | 0.809 | T | -101.6 | 2.5 | NA | NA | NA | |||||||||||||
ALA | H:66 | H:66 | 95.0 | 0.826 | T | -88.0 | -25.4 | NA | NA | NA | |||||||||||||
1xw5 | 1 | P28161 | 81.11 | 1e-132 |
X-RAY |
2004-11-30 | THR | A:66 | A:66 | 131.0 | 0.936 | T | -76.1 | -9.5 | 119.0 | 0.85 | 0.086 |
B:P28161:0.086 |
HOH |
2.799 |
N |
O |
|
THR | B:66 | B:66 | 129.0 | 0.921 | T | -75.3 | -11.4 | 118.0 | 0.843 | 0.078 |
A:P28161:0.079 |
HOH |
2.637 |
N |
O |
||||||||
1ykc | 1 | P28161 | 81.11 | 1e-132 |
X-RAY |
2005-01-25 | THR | A:66 | A:66 | 130.0 | 0.929 | T | -76.2 | -18.3 | 112.0 | 0.8 | 0.129 |
B:P28161:0.129 |
HOH |
2.606 |
N |
O |
|
THR | B:66 | B:66 | 126.0 | 0.9 | T | -79.3 | -17.3 | 113.0 | 0.807 | 0.093 |
A:P28161:0.093 |
HOH |
2.971 |
O |
O |
||||||||
2ab6 | 1 | P28161 | 81.11 | 1e-132 |
X-RAY |
2005-08-02 | THR | A:66 | A:66 | 127.0 | 0.907 | T | -68.4 | -35.6 | 116.0 | 0.829 | 0.078 |
B:P28161:0.079 |
HOH |
8.777 |
O |
O |
|
THR | B:66 | B:66 | 130.0 | 0.929 | T | -73.3 | -32.2 | 118.0 | 0.843 | 0.086 |
A:P28161:0.086 |
HOH |
4.985 |
O |
O |
||||||||
THR | C:66 | C:66 | 130.0 | 0.929 | T | -71.9 | -31.2 | NA | NA | NA | |||||||||||||
THR | D:66 | D:66 | 130.0 | 0.929 | T | -69.8 | -32.7 | NA | NA | NA | |||||||||||||
2gtu | 1 | P28161 | 81.11 | 1e-132 |
X-RAY |
1999-03-02 | THR | A:66 | A:66 | 126.0 | 0.9 | T | -73.7 | -9.1 | 108.0 | 0.771 | 0.129 |
B:P28161:0.129 |
HOH |
7.700 |
O |
O |
|
THR | B:66 | B:66 | 128.0 | 0.914 | T | -81.2 | -16.3 | 113.0 | 0.807 | 0.107 |
A:P28161:0.107 |
HOH |
7.627 |
O |
O |
||||||||
3gtu | 1 | P28161 | 81.11 | 1e-132 |
X-RAY |
1999-07-29 | THR | A:66 | A:66 | 123.0 | 0.879 | T | -87.7 | -10.9 | 123.0 | 0.879 | 0.0 |
HOH |
9.523 |
O |
O |
||
THR | C:66 | C:66 | 123.0 | 0.879 | T | -85.1 | -16.7 | NA | NA | NA | |||||||||||||
3gur | 1 | P28161 | 81.11 | 1e-132 |
X-RAY |
2009-10-27 | THR | A:66 | A:66 | 122.0 | 0.871 | T | -69.9 | -21.2 | 122.0 | 0.871 | 0.0 |
HOH |
3.708 |
O |
O |
||
THR | B:66 | B:66 | 124.0 | 0.886 | T | -86.4 | 5.0 | 124.0 | 0.886 | 0.0 |
HOH |
4.446 |
O |
O |
|||||||||
THR | C:66 | C:66 | 126.0 | 0.9 | T | -101.5 | -11.7 | NA | NA | NA | |||||||||||||
THR | D:66 | D:66 | 125.0 | 0.893 | T | -75.5 | -12.5 | NA | NA | NA | |||||||||||||
5hwl | 1 | P28161 | 81.11 | 1e-132 |
X-RAY |
2017-11-08 | THR | A:66 | A:66 | 93.0 | NA | T | -88.1 | -1.3 | 87.0 | NA | NA |
B:P28161:NA |
HOH |
5.504 |
O |
O |
|
THR | B:66 | B:66 | 90.0 | NA | T | -82.4 | -17.4 | 90.0 | NA | NA |
HOH |
8.072 |
O |
O |
|||||||||
1hna | 1 | P28161 | 80.65 | 2e-131 |
X-RAY |
1994-01-31 | THR | A:66 | A:66 | 133.0 | 0.95 | T | -88.2 | -12.5 | 131.0 | 0.936 | 0.014 |
A:P28161:0.014 |
HOH |
3.097 |
O |
O |
|
1hnb | 1 | P28161 | 80.65 | 2e-131 |
X-RAY |
1994-01-31 | THR | A:66 | A:66 | 121.0 | 0.864 | S | -97.0 | 44.4 | 102.0 | 0.729 | 0.135 |
B:P28161:0.136 |
|||||
THR | B:66 | B:66 | 120.0 | 0.857 | T | -96.3 | -46.4 | 117.0 | 0.836 | 0.021 |
A:P28161:0.021 |
||||||||||||
1hnc | 1 | P28161 | 80.65 | 2e-131 |
X-RAY |
1994-01-31 | THR | A:66 | A:66 | 124.0 | 0.886 | T | -90.7 | -18.3 | 124.0 | 0.886 | 0.0 | ||||||
THR | B:66 | B:66 | 127.0 | 0.907 | T | -110.8 | 7.3 | 111.0 | 0.793 | 0.114 |
A:P28161:0.114 |
||||||||||||
THR | C:66 | C:66 | 129.0 | 0.921 | T | -113.5 | 26.0 | NA | NA | NA | |||||||||||||
THR | D:66 | D:66 | 131.0 | 0.936 | T | -92.0 | 12.3 | NA | NA | NA |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p46439-f1 | 1 | P46439 | 100.0 | 5e-163 | ALA | A:67 | A:67 | 88.0 | 0.765 | T | -78.9 | -18.7 | |
af-p09488-f1 | 1 | P09488 | 87.61 | 6e-142 | ALA | A:67 | A:67 | 85.0 | 0.739 | T | -78.6 | -21.6 | |
af-q03013-f1 | 1 | Q03013 | 83.03 | 1e-134 | ALA | A:67 | A:67 | 86.0 | 0.748 | T | -78.7 | -20.1 | |
af-p28161-f1 | 1 | P28161 | 81.19 | 6e-134 | THR | A:67 | A:67 | 120.0 | 0.857 | T | -83.3 | -19.5 |