Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 110256334 . T A CCDS811.1:NM_000851.3:c.311gTt>gAt_NP_000842.2:p.104V>D Homo sapiens glutathione S-transferase mu 5 (GSTM5), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1xw6 1 P09488 87.61 1e-141 X-RAY
 2004-12-21 THR A:104 A:103 2.0 0.014 H -58.0 -43.8 2.0 0.014 0.0 GSH
GSH
HOH
 9.610
8.452
3.374
 C
N
OG1
 O11
N1
O
THR B:104 B:103 3.0 0.021 H -61.8 -42.5 3.0 0.021 0.0 GSH
GSH
HOH
 8.584
9.914
3.183
 N
C
OG1
 N1
O11
O
THR C:104 C:103 2.0 0.014 H -60.4 -41.3 NA NA NA
THR D:104 D:103 3.0 0.021 H -62.2 -39.2 NA NA NA
1xwk 1 P09488 87.61 1e-141 X-RAY
 2004-12-21 THR A:104 A:103 3.0 0.021 H -61.9 -45.5 3.0 0.021 0.0 GDN
GDN
HOH
 8.864
8.369
3.145
 O
N
OG1
 O2A
N1
O
THR B:104 B:103 3.0 0.021 H -55.6 -45.2 NA NA NA
THR C:104 C:103 3.0 0.021 H -57.6 -44.3 3.0 0.021 0.0 GDN
GDN
HOH
 8.225
8.560
3.120
 N
O
OG1
 N1
O2A
O
1yj6 1 P09488 87.61 1e-141 X-RAY
 2005-02-01 THR A:104 A:103 3.0 0.021 H -60.2 -43.2 3.0 0.021 0.0 GSH
GSH
HOH
 9.867
8.357
7.305
 OG1
N
OG1
 O11
N1
O
THR B:104 B:103 4.0 0.029 H -58.0 -43.7 4.0 0.029 0.0 GSH
GSH
HOH
 8.192
9.619
4.020
 N
OG1
CB
 N1
O11
O
THR C:104 C:103 2.0 0.014 H -55.0 -40.4 NA NA NA
2f3m 1 P09488 87.61 1e-141 X-RAY
 2006-04-25 THR A:104 A:103 3.0 0.021 H -58.5 -46.7 3.0 0.021 0.0 GTD
GTD
HOH
 8.908
8.836
3.907
 O
N
CB
 O41
N1
O
THR B:104 B:103 3.0 0.021 H -63.3 -44.7 3.0 0.021 0.0 GTD
GTD
HOH
 8.457
9.212
5.194
 N
O
O
 N1
O41
O
THR C:104 C:103 3.0 0.021 H -62.9 -44.7 NA NA NA
THR D:104 D:103 3.0 0.021 H -64.1 -42.6 NA NA NA
THR E:104 E:103 3.0 0.021 H -59.0 -45.5 NA NA NA
THR F:104 F:103 3.0 0.021 H -60.5 -44.8 NA NA NA
7beu 1 P09488 87.61 1e-141 X-RAY
 2022-01-12 THR A:104 A:103 3.0 0.021 H -63.9 -38.0 3.0 0.021 0.0 HOH
 2.948
 OG1
 O
THR B:104 B:103 3.0 0.021 H -62.4 -37.0 NA NA NA
THR C:104 C:103 3.0 0.021 H -63.1 -38.6 NA NA NA
THR D:104 D:103 3.0 0.021 H -64.1 -36.4 3.0 0.021 0.0 HOH
 2.984
 OG1
 O
1gtu 1 P09488 87.56 1e-140 X-RAY
 1999-02-02 THR A:103 A:103 1.0 0.007 H -59.4 -40.9 1.0 0.007 0.0 HOH
 7.083
 OG1
 O
THR B:103 B:103 1.0 0.007 H -60.3 -42.3 1.0 0.007 0.0 HOH
 7.692
 C
 O
THR C:103 C:103 3.0 0.021 H -66.3 -44.4 NA NA NA
THR D:103 D:103 2.0 0.014 H -57.2 -39.6 NA NA NA
2c4j 1 P28161 81.19 8e-134 X-RAY
 2005-10-26 PHE A:104 A:104 0.0 0.0 H -62.2 -38.1 0.0 0.0 0.0 GSO
HOH
 8.340
4.632
 N
C
 N
O
PHE B:104 B:104 0.0 0.0 H -61.6 -35.7 0.0 0.0 0.0 GSO
HOH
 8.224
4.649
 N
C
 N
O
PHE C:104 C:104 0.0 0.0 H -59.7 -36.3 NA NA NA
PHE D:104 D:104 0.0 0.0 H -65.6 -34.0 NA NA NA
2dc5 1 30354091 81.57 1e-133 X-RAY
 2006-06-28 LEU A:111 A:111 0.0 0.0 H -65.6 -37.7 0.0 0.0 0.0 HOH
 4.315
 CB
 O
LEU B:111 B:111 1.0 0.006 H -65.1 -37.3 1.0 0.006 0.0 HOH
 4.216
 CB
 O
4gtu 1 Q03013 83.33 2e-133 X-RAY
 2000-01-14 ALA A:103 A:103 0.0 0.0 H -65.5 -32.8 0.0 0.0 0.0
ALA B:103 B:103 1.0 0.009 H -55.5 -58.1 1.0 0.009 0.0
ALA C:103 C:103 1.0 0.009 H -60.6 -44.9 NA NA NA
ALA D:103 D:103 0.0 0.0 H -53.3 -45.8 NA NA NA
ALA E:103 E:103 1.0 0.009 H -54.4 -41.4 NA NA NA
ALA F:103 F:103 0.0 0.0 H -60.3 -42.3 NA NA NA
ALA G:103 G:103 0.0 0.0 H -63.3 -45.3 NA NA NA
ALA H:103 H:103 0.0 0.0 H -59.2 -24.7 NA NA NA
1xw5 1 P28161 81.11 1e-132 X-RAY
 2004-11-30 PHE A:103 A:103 0.0 0.0 H -61.6 -35.2 0.0 0.0 0.0 GSH
HOH
 8.162
4.583
 N
CB
 N1
O
PHE B:103 B:103 0.0 0.0 H -58.5 -36.4 0.0 0.0 0.0 GSH
HOH
 8.146
4.628
 N
CB
 N1
O
1ykc 1 P28161 81.11 1e-132 X-RAY
 2005-01-25 PHE A:103 A:103 0.0 0.0 H -57.0 -35.9 0.0 0.0 0.0 GDS
GDS
HOH
 8.142
8.608
4.874
 O
N
C
 OE3
N6
O
PHE B:103 B:103 0.0 0.0 H -66.9 -37.2 0.0 0.0 0.0 GDS
GDS
HOH
 8.442
8.267
4.831
 N
O
C
 N6
OE3
O
2ab6 1 P28161 81.11 1e-132 X-RAY
 2005-08-02 PHE A:103 A:103 0.0 0.0 H -50.9 -44.4 0.0 0.0 0.0 GSM
HOH
 8.634
4.632
 N
C
 N1
O
PHE B:103 B:103 0.0 0.0 H -53.1 -35.3 0.0 0.0 0.0 GSM
HOH
 8.501
5.940
 N
O
 N1
O
PHE C:103 C:103 0.0 0.0 H -51.5 -39.6 NA NA NA
PHE D:103 D:103 0.0 0.0 H -53.8 -39.8 NA NA NA
2gtu 1 P28161 81.11 1e-132 X-RAY
 1999-03-02 PHE A:103 A:103 0.0 0.0 H -68.2 -36.7 0.0 0.0 0.0 HOH
 4.698
 C
 O
PHE B:103 B:103 0.0 0.0 H -62.7 -37.6 0.0 0.0 0.0 HOH
 4.685
 C
 O
3gtu 1 P28161 81.11 1e-132 X-RAY
 1999-07-29 PHE A:103 A:103 0.0 0.0 H -74.8 -32.1 0.0 0.0 0.0 HOH
 6.992
 N
 O
PHE C:103 C:103 0.0 0.0 H -67.3 -35.0 NA NA NA
3gur 1 P28161 81.11 1e-132 X-RAY
 2009-10-27 PHE A:103 A:103 0.0 0.0 H -60.6 -38.3 0.0 0.0 0.0 BYG
GSH
HOH
 8.185
8.856
4.561
 O
N
C
 OA4
N1
O
PHE B:103 B:103 0.0 0.0 H -62.4 -38.7 0.0 0.0 0.0 BYG
HOH
 9.138
4.499
 N
CB
 CA1
O
PHE C:103 C:103 0.0 0.0 H -64.7 -37.1 NA NA NA
PHE D:103 D:103 0.0 0.0 H -63.5 -32.6 NA NA NA
5hwl 1 P28161 81.11 1e-132 X-RAY
 2017-11-08 PHE A:103 A:103 0.0 0.0 H -66.9 -27.9 0.0 0.0 0.0 GSH
NNE
HOH
 8.094
7.003
4.619
 N
C
C
 N1
CAX
O
PHE B:103 B:103 0.0 0.0 H -63.7 -28.8 0.0 0.0 0.0 GSH
NNE
HOH
 8.039
7.290
4.683
 N
C
C
 N1
CAR
O
1hna 1 P28161 80.65 2e-131 X-RAY
 1994-01-31 PHE A:103 A:103 0.0 0.0 H -63.0 -36.3 0.0 0.0 0.0 GDN
HOH
 8.176
4.574
 N
CB
 N1
O
1hnb 1 P28161 80.65 2e-131 X-RAY
 1994-01-31 PHE A:103 A:103 0.0 0.0 H -51.0 -30.1 0.0 0.0 0.0 GDN
 8.109
 N
 O11
PHE B:103 B:103 0.0 0.0 H -53.8 -38.2 0.0 0.0 0.0 GDN
 8.796
 N
 N1
1hnc 1 P28161 80.65 2e-131 X-RAY
 1994-01-31 PHE A:103 A:103 0.0 0.0 H -60.5 -43.8 0.0 0.0 0.0 GDN
 8.829
 N
 N1
PHE B:103 B:103 0.0 0.0 H -73.1 -41.8 0.0 0.0 0.0 GDN
 8.230
 N
 N1
PHE C:103 C:103 0.0 0.0 H -60.9 -25.9 NA NA NA
PHE D:103 D:103 0.0 0.0 H -58.7 -34.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p46439-f1 1 P46439 100.0 5e-163 VAL A:104 A:104 3.0 0.019 H -65.1 -37.1
af-p09488-f1 1 P09488 87.61 6e-142 THR A:104 A:104 3.0 0.021 H -67.6 -39.2
af-q03013-f1 1 Q03013 83.03 1e-134 ALA A:104 A:104 2.0 0.017 H -64.0 -39.3
af-p28161-f1 1 P28161 81.19 6e-134 PHE A:104 A:104 0.0 0.0 H -69.4 -30.2