Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 110256337 . T A CCDS811.1:NM_000851.3:c.314aTg>aAg_NP_000842.2:p.105M>K Homo sapiens glutathione S-transferase mu 5 (GSTM5), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1xw6 1 P09488 87.61 1e-141 X-RAY
 2004-12-21 MET A:105 A:104 43.0 0.232 H -60.5 -41.7 41.0 0.222 0.01 B:P09488:0.011
 GSH
GSH
HOH
 3.527
7.378
3.261
 CE
C
CB
 O11
N1
O
MET B:105 B:104 42.0 0.227 H -62.2 -39.6 42.0 0.227 0.0 GSH
GSH
HOH
 7.368
3.707
3.386
 C
CE
CB
 N1
O11
O
MET C:105 C:104 42.0 0.227 H -62.9 -39.2 NA NA NA
MET D:105 D:104 42.0 0.227 H -64.3 -40.0 NA NA NA
1xwk 1 P09488 87.61 1e-141 X-RAY
 2004-12-21 MET A:105 A:104 44.0 0.238 H -54.4 -34.5 32.0 0.173 0.065 C:P09488:0.065
 GDN
GDN
HOH
 2.980
7.218
3.391
 CE
C
CB
 O11
N1
O
MET B:105 B:104 42.0 0.227 H -56.0 -40.0 NA NA NA
MET C:105 C:104 46.0 0.249 H -58.2 -33.1 34.0 0.184 0.065 A:P09488:0.065
 GDN
GDN
HOH
 7.116
3.009
3.020
 C
CE
CE
 N1
O11
O
1yj6 1 P09488 87.61 1e-141 X-RAY
 2005-02-01 MET A:105 A:104 49.0 0.265 H -55.9 -40.6 44.0 0.238 0.027 B:P09488:0.027
 ZN
GSH
GSH
HOH
 8.065
4.376
6.957
2.841
 CE
SD
CB
SD
 ZN
O11
N1
O
MET B:105 B:104 46.0 0.249 H -56.9 -38.5 37.0 0.2 0.049 A:P09488:0.049
 GSH
ZN
GSH
HOH
 7.098
8.520
3.167
3.196
 CB
SD
CE
CE
 N1
ZN
O11
O
MET C:105 C:104 39.0 0.211 H -60.6 -41.3 NA NA NA
2f3m 1 P09488 87.61 1e-141 X-RAY
 2006-04-25 MET A:105 A:104 61.0 0.33 H -49.2 -39.6 50.0 0.27 0.06 B:P09488:0.059
 GTD
GTD
HOH
 3.616
7.477
4.845
 CE
CB
N
 O12
N1
O
MET B:105 B:104 53.0 0.286 H -55.1 -38.6 52.0 0.281 0.005 A:P09488:0.005
 GTD
GTD
HOH
 7.398
4.535
4.694
 C
SD
CE
 N1
O12
O
MET C:105 C:104 60.0 0.324 H -59.0 -29.5 NA NA NA
MET D:105 D:104 53.0 0.286 H -57.2 -37.0 NA NA NA
MET E:105 E:104 58.0 0.314 H -50.6 -40.5 NA NA NA
MET F:105 F:104 52.0 0.281 H -53.4 -40.5 NA NA NA
7beu 1 P09488 87.61 1e-141 X-RAY
 2022-01-12 MET A:105 A:104 46.0 0.249 H -62.4 -42.2 43.0 0.232 0.017 D:P09488:0.016
 HOH
 3.277
 N
 O
MET B:105 B:104 40.0 0.216 H -66.6 -40.3 NA NA NA
MET C:105 C:104 41.0 0.222 H -61.4 -41.9 NA NA NA
MET D:105 D:104 58.0 0.314 H -66.4 -42.0 57.0 0.308 0.006 A:P09488:0.005
 HOH
 2.870
 CB
 O
1gtu 1 P09488 87.56 1e-140 X-RAY
 1999-02-02 MET A:104 A:104 40.0 0.216 H -59.0 -35.9 35.0 0.189 0.027 B:P09488:0.027
 HOH
 3.113
 CE
 O
MET B:104 B:104 40.0 0.216 H -62.6 -35.4 37.0 0.2 0.016 A:P09488:0.016
 HOH
 3.209
 CE
 O
MET C:104 C:104 37.0 0.2 H -57.3 -39.4 NA NA NA
MET D:104 D:104 42.0 0.227 H -61.0 -40.0 NA NA NA
2c4j 1 P28161 81.19 8e-134 X-RAY
 2005-10-26 MET A:105 A:105 37.0 0.2 H -60.0 -42.6 36.0 0.195 0.005 B:P28161:0.005
 GSO
GSO
HOH
 3.937
7.059
3.312
 CE
C
CB
 OT1
N
O
MET B:105 B:105 40.0 0.216 H -63.4 -41.2 40.0 0.216 0.0 GSO
GSO
HOH
 6.940
3.995
3.386
 C
CE
CB
 N
OT1
O
MET C:105 C:105 36.0 0.195 H -63.2 -40.4 NA NA NA
MET D:105 D:105 37.0 0.2 H -64.5 -42.5 NA NA NA
2dc5 1 30354091 81.57 1e-133 X-RAY
 2006-06-28 MSE A:112 A:112 41.0 0.222 H -67.2 -40.2 23.0 0.124 0.098 B:30354091:0.097
 HOH
 3.461
 CG
 O
MSE B:112 B:112 40.0 0.216 H -65.3 -41.1 22.0 0.119 0.097 A:30354091:0.097
 HOH
 3.133
 CE
 O
4gtu 1 Q03013 83.33 2e-133 X-RAY
 2000-01-14 MET A:104 A:104 32.0 0.173 H -74.6 -30.7 32.0 0.173 0.0
MET B:104 B:104 38.0 0.205 H -58.1 -26.8 38.0 0.205 0.0
MET C:104 C:104 25.0 0.135 H -67.9 -31.1 NA NA NA
MET D:104 D:104 35.0 0.189 H -66.5 -40.5 NA NA NA
MET E:104 E:104 35.0 0.189 H -66.9 -50.2 NA NA NA
MET F:104 F:104 30.0 0.162 H -59.4 -52.0 NA NA NA
MET G:104 G:104 34.0 0.184 H -64.3 -33.8 NA NA NA
MET H:104 H:104 92.0 0.497 H -69.8 -47.4 NA NA NA
1xw5 1 P28161 81.11 1e-132 X-RAY
 2004-11-30 MET A:104 A:104 40.0 0.216 H -63.2 -39.6 40.0 0.216 0.0 GSH
GSH
HOH
 4.315
6.926
3.173
 CE
C
SD
 O12
N1
O
MET B:104 B:104 44.0 0.238 H -63.0 -39.7 42.0 0.227 0.011 A:P28161:0.011
 GSH
GSH
HOH
 6.967
4.390
3.337
 CB
CE
CB
 N1
O12
O
1ykc 1 P28161 81.11 1e-132 X-RAY
 2005-01-25 MET A:104 A:104 37.0 0.2 H -67.2 -40.2 36.0 0.195 0.005 B:P28161:0.005
 GDS
GDS
HOH
 3.882
7.440
3.194
 CE
C
CB
 OE7
N6
O
MET B:104 B:104 37.0 0.2 H -63.3 -41.7 35.0 0.189 0.011 A:P28161:0.011
 GDS
GDS
HOH
 7.340
3.875
3.337
 C
CE
CB
 N6
OE7
O
2ab6 1 P28161 81.11 1e-132 X-RAY
 2005-08-02 MET A:104 A:104 39.0 0.211 H -58.0 -43.9 36.0 0.195 0.016 B:P28161:0.016
 GSM
GSM
HOH
 4.112
7.114
3.201
 CE
C
CB
 O12
N1
O
MET B:104 B:104 37.0 0.2 H -70.9 -36.0 35.0 0.189 0.011 A:P28161:0.011
 GSM
GSM
HOH
 7.045
4.195
3.479
 C
CE
CB
 N1
O12
O
MET C:104 C:104 37.0 0.2 H -64.4 -44.0 NA NA NA
MET D:104 D:104 38.0 0.205 H -64.5 -40.3 NA NA NA
2gtu 1 P28161 81.11 1e-132 X-RAY
 1999-03-02 MET A:104 A:104 41.0 0.222 H -62.8 -37.7 39.0 0.211 0.011 B:P28161:0.011
 HOH
 3.619
 CB
 O
MET B:104 B:104 39.0 0.211 H -62.1 -34.2 38.0 0.205 0.006 A:P28161:0.005
 HOH
 3.340
 CE
 O
3gtu 1 P28161 81.11 1e-132 X-RAY
 1999-07-29 MET A:104 A:104 44.0 0.238 H -64.0 -37.6 44.0 0.238 0.0 HOH
 3.500
 CE
 O
MET C:104 C:104 42.0 0.227 H -63.0 -38.3 NA NA NA
3gur 1 P28161 81.11 1e-132 X-RAY
 2009-10-27 MET A:104 A:104 37.0 0.2 H -61.2 -39.9 34.0 0.184 0.016 B:P28161:0.016
 BYG
GSH
HOH
 3.964
7.460
3.515
 CE
C
CB
 O11
N1
O
MET B:104 B:104 35.0 0.189 H -58.2 -45.2 35.0 0.189 0.0 BYG
GSH
HOH
 7.855
3.956
3.418
 C
CE
CE
 N1
O11
O
MET C:104 C:104 38.0 0.205 H -60.9 -43.3 NA NA NA
MET D:104 D:104 34.0 0.184 H -64.1 -45.1 NA NA NA
5hwl 1 P28161 81.11 1e-132 X-RAY
 2017-11-08 MET A:104 A:104 53.0 0.286 H -64.5 -44.0 51.0 0.276 0.01 B:P28161:0.011
 GSH
GSH
NNE
HOH
 4.123
6.746
3.477
3.340
 CE
C
SD
SD
 O11
N1
CL3
O
MET B:104 B:104 52.0 0.281 H -68.5 -42.5 49.0 0.265 0.016 A:P28161:0.016
 GSH
GSH
NNE
HOH
 6.684
4.030
3.512
3.269
 C
CE
SD
SD
 N1
O12
CL2
O
1hna 1 P28161 80.65 2e-131 X-RAY
 1994-01-31 MET A:104 A:104 41.0 0.222 H -62.8 -41.1 38.0 0.205 0.017 A:P28161:0.016
 GDN
GDN
HOH
 3.790
7.061
3.568
 CE
C
SD
 O11
N1
O
1hnb 1 P28161 80.65 2e-131 X-RAY
 1994-01-31 MET A:104 A:104 39.0 0.211 H -69.5 -50.3 35.0 0.189 0.022 B:P28161:0.022
 GDN
GDN
 4.012
7.039
 CE
CB
 O12
O11
MET B:104 B:104 43.0 0.232 H -58.6 -44.6 37.0 0.2 0.032 A:P28161:0.032
 GDN
GDN
 7.325
5.403
 CG
SD
 N1
O11
1hnc 1 P28161 80.65 2e-131 X-RAY
 1994-01-31 MET A:104 A:104 37.0 0.2 H -50.2 -43.8 33.0 0.178 0.022 B:P28161:0.022
 GDN
GDN
 5.010
7.410
 SD
C
 O11
N1
MET B:104 B:104 44.0 0.238 H -57.8 -40.8 38.0 0.205 0.033 A:P28161:0.032
 GDN
GDN
 7.195
3.691
 C
CE
 N1
O11
MET C:104 C:104 37.0 0.2 H -71.1 -50.3 NA NA NA
MET D:104 D:104 38.0 0.205 H -65.1 -31.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p46439-f1 1 P46439 100.0 5e-163 MET A:105 A:105 47.0 0.254 H -65.6 -43.2
af-p09488-f1 1 P09488 87.61 6e-142 MET A:105 A:105 50.0 0.27 H -62.4 -45.3
af-q03013-f1 1 Q03013 83.03 1e-134 MET A:105 A:105 42.0 0.227 H -64.0 -46.1
af-p28161-f1 1 P28161 81.19 6e-134 MET A:105 A:105 42.0 0.227 H -64.7 -43.6