Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 110256344 . C A CCDS811.1:NM_000851.3:c.321aaC>aaA_NP_000842.2:p.107N>K Homo sapiens glutathione S-transferase mu 5 (GSTM5), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1xw6 1 P09488 87.61 1e-141 X-RAY
 2004-12-21 ASN A:107 A:106 10.0 0.062 H -64.4 -36.0 9.0 0.056 0.006 B:P09488:0.006
 GSH
HOH
 7.876
2.933
 N
ND2
 N1
O
ASN B:107 B:106 8.0 0.05 H -65.6 -35.4 8.0 0.05 0.0 GSH
HOH
 8.094
2.839
 N
O
 N1
O
ASN C:107 C:106 9.0 0.056 H -65.3 -37.1 NA NA NA
ASN D:107 D:106 9.0 0.056 H -64.9 -37.2 NA NA NA
1xwk 1 P09488 87.61 1e-141 X-RAY
 2004-12-21 ASN A:107 A:106 8.0 0.05 H -47.1 -30.0 8.0 0.05 0.0 GDN
GDN
HOH
 8.360
7.831
3.334
 O
N
OD1
 O2A
N1
O
ASN B:107 B:106 9.0 0.056 H -51.1 -36.7 NA NA NA
ASN C:107 C:106 10.0 0.062 H -50.5 -30.4 10.0 0.062 0.0 GDN
GDN
HOH
 7.709
8.295
3.180
 N
C
ND2
 N1
O2A
O
1yj6 1 P09488 87.61 1e-141 X-RAY
 2005-02-01 ASN A:107 A:106 9.0 0.056 H -56.1 -36.3 9.0 0.056 0.0 GSH
HOH
 8.058
7.024
 N
ND2
 N1
O
ASN B:107 B:106 8.0 0.05 H -56.3 -35.4 8.0 0.05 0.0 GSH
HOH
 8.066
3.360
 N
ND2
 N1
O
ASN C:107 C:106 8.0 0.05 H -60.4 -38.5 NA NA NA
2f3m 1 P09488 87.61 1e-141 X-RAY
 2006-04-25 ASN A:107 A:106 6.0 0.037 H -58.4 -33.5 6.0 0.037 0.0 GTD
GTD
HOH
 7.887
8.404
3.137
 O
N
OD1
 O41
N1
O
ASN B:107 B:106 8.0 0.05 H -59.2 -30.9 8.0 0.05 0.0 GTD
GTD
HOH
 8.198
7.827
2.938
 N
O
O
 N1
O41
O
ASN C:107 C:106 7.0 0.044 H -61.1 -32.1 NA NA NA
ASN D:107 D:106 6.0 0.037 H -59.5 -32.0 NA NA NA
ASN E:107 E:106 7.0 0.044 H -62.2 -32.7 NA NA NA
ASN F:107 F:106 7.0 0.044 H -60.8 -30.0 NA NA NA
7beu 1 P09488 87.61 1e-141 X-RAY
 2022-01-12 ASN A:107 A:106 8.0 0.05 H -69.7 -36.7 8.0 0.05 0.0 HOH
 2.816
 O
 O
ASN B:107 B:106 7.0 0.044 H -69.9 -33.7 NA NA NA
ASN C:107 C:106 6.0 0.037 H -68.2 -37.0 NA NA NA
ASN D:107 D:106 9.0 0.056 H -70.4 -33.0 8.0 0.05 0.006 A:P09488:0.006
 HOH
 2.644
 O
 O
1gtu 1 P09488 87.56 1e-140 X-RAY
 1999-02-02 ASN A:106 A:106 4.0 0.025 H -56.4 -37.4 4.0 0.025 0.0 HOH
 6.282
 OD1
 O
ASN B:106 B:106 7.0 0.044 H -56.2 -34.9 6.0 0.037 0.007 A:P09488:0.006
 HOH
 6.714
 N
 O
ASN C:106 C:106 6.0 0.037 H -61.9 -30.8 NA NA NA
ASN D:106 D:106 4.0 0.025 H -55.8 -32.7 NA NA NA
2c4j 1 P28161 81.19 8e-134 X-RAY
 2005-10-26 SER A:107 A:107 2.0 0.017 H -60.2 -45.0 2.0 0.017 0.0 GSO
HOH
 8.021
2.813
 N
O
 N
O
SER B:107 B:107 3.0 0.026 H -62.3 -44.5 3.0 0.026 0.0 GSO
HOH
 7.955
2.743
 N
OG
 N
O
SER C:107 C:107 3.0 0.026 H -60.4 -45.1 NA NA NA
SER D:107 D:107 2.0 0.017 H -61.9 -44.1 NA NA NA
2dc5 1 30354091 81.57 1e-133 X-RAY
 2006-06-28 ASN A:114 A:114 18.0 0.113 H -69.5 -34.5 18.0 0.113 0.0 HOH
 2.930
 O
 O
ASN B:114 B:114 8.0 0.05 H -60.6 -47.3 8.0 0.05 0.0 HOH
 4.954
 O
 O
4gtu 1 Q03013 83.33 2e-133 X-RAY
 2000-01-14 VAL A:106 A:106 7.0 0.045 H -65.4 -35.5 7.0 0.045 0.0
VAL B:106 B:106 8.0 0.052 H -78.5 -27.2 8.0 0.052 0.0
VAL C:106 C:106 1.0 0.006 H -66.2 -36.4 NA NA NA
VAL D:106 D:106 14.0 0.09 H -70.6 -39.8 NA NA NA
VAL E:106 E:106 6.0 0.039 H -68.6 -23.9 NA NA NA
VAL F:106 F:106 13.0 0.084 H -68.1 -29.4 NA NA NA
VAL G:106 G:106 4.0 0.026 H -81.5 -28.0 NA NA NA
VAL H:106 H:106 5.0 0.032 H -60.0 -37.7 NA NA NA
1xw5 1 P28161 81.11 1e-132 X-RAY
 2004-11-30 SER A:106 A:106 1.0 0.009 H -63.5 -40.7 1.0 0.009 0.0 GSH
HOH
 7.883
2.708
 N
O
 N1
O
SER B:106 B:106 1.0 0.009 H -60.7 -41.5 1.0 0.009 0.0 GSH
HOH
 7.951
2.640
 N
O
 N1
O
1ykc 1 P28161 81.11 1e-132 X-RAY
 2005-01-25 SER A:106 A:106 1.0 0.009 H -63.9 -40.6 1.0 0.009 0.0 GDS
GDS
HOH
 7.459
8.205
2.699
 O
N
O
 OE4
N6
O
SER B:106 B:106 1.0 0.009 H -68.8 -38.7 1.0 0.009 0.0 GDS
GDS
HOH
 8.132
7.417
2.650
 N
O
OG
 N6
OE4
O
2ab6 1 P28161 81.11 1e-132 X-RAY
 2005-08-02 SER A:106 A:106 0.0 0.0 H -72.8 -40.1 0.0 0.0 0.0 GSM
HOH
 8.119
5.258
 N
N
 N1
O
SER B:106 B:106 0.0 0.0 H -65.2 -42.7 0.0 0.0 0.0 GSM
HOH
 8.069
2.664
 N
O
 N1
O
SER C:106 C:106 1.0 0.009 H -73.0 -41.4 NA NA NA
SER D:106 D:106 0.0 0.0 H -68.4 -44.3 NA NA NA
2gtu 1 P28161 81.11 1e-132 X-RAY
 1999-03-02 SER A:106 A:106 4.0 0.035 H -60.7 -44.8 4.0 0.035 0.0 HOH
 2.712
 O
 O
SER B:106 B:106 2.0 0.017 H -63.7 -43.8 2.0 0.017 0.0 HOH
 2.773
 O
 O
3gtu 1 P28161 81.11 1e-132 X-RAY
 1999-07-29 SER A:106 A:106 3.0 0.026 H -58.5 -41.2 3.0 0.026 0.0 HOH
 4.737
 OG
 O
SER C:106 C:106 4.0 0.035 H -60.7 -42.6 NA NA NA
3gur 1 P28161 81.11 1e-132 X-RAY
 2009-10-27 SER A:106 A:106 1.0 0.009 H -57.6 -47.9 1.0 0.009 0.0 BYG
GSH
HOH
 7.229
8.261
4.496
 O
N
OG
 OA4
N1
O
SER B:106 B:106 3.0 0.026 H -63.8 -43.6 3.0 0.026 0.0 BYG
HOH
 8.667
5.536
 N
O
 N1
O
SER C:106 C:106 1.0 0.009 H -53.2 -47.3 NA NA NA
SER D:106 D:106 0.0 0.0 H -63.0 -41.5 NA NA NA
5hwl 1 P28161 81.11 1e-132 X-RAY
 2017-11-08 SER A:106 A:106 15.0 0.13 H -62.2 -43.7 15.0 0.13 0.0 GSH
NNE
HOH
 7.774
5.712
2.842
 N
N
O
 N1
OBA
O
SER B:106 B:106 7.0 0.061 H -60.6 -44.7 7.0 0.061 0.0 GSH
NNE
HOH
 7.781
5.715
2.912
 N
N
O
 N1
OAZ
O
1hna 1 P28161 80.65 2e-131 X-RAY
 1994-01-31 SER A:106 A:106 2.0 0.017 H -63.5 -43.5 2.0 0.017 0.0 GDN
HOH
 7.963
2.522
 N
O
 N1
O
1hnb 1 P28161 80.65 2e-131 X-RAY
 1994-01-31 SER A:106 A:106 6.0 0.052 H -61.1 -37.1 6.0 0.052 0.0 GDN
 7.975
 N
 O12
SER B:106 B:106 6.0 0.052 H -55.6 -39.5 6.0 0.052 0.0 GDN
 8.156
 N
 N1
1hnc 1 P28161 80.65 2e-131 X-RAY
 1994-01-31 SER A:106 A:106 1.0 0.009 H -61.0 -39.9 1.0 0.009 0.0 GDN
 8.155
 N
 N1
SER B:106 B:106 3.0 0.026 H -57.4 -36.8 3.0 0.026 0.0 GDN
 7.890
 N
 N1
SER C:106 C:106 1.0 0.009 H -71.8 -35.7 NA NA NA
SER D:106 D:106 5.0 0.043 H -57.3 -33.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p46439-f1 1 P46439 100.0 5e-163 ASN A:107 A:107 12.0 0.075 H -74.5 -25.4
af-p09488-f1 1 P09488 87.61 6e-142 ASN A:107 A:107 10.0 0.062 H -72.9 -37.3
af-q03013-f1 1 Q03013 83.03 1e-134 VAL A:107 A:107 2.0 0.013 H -65.9 -46.4
af-p28161-f1 1 P28161 81.19 6e-134 SER A:107 A:107 1.0 0.009 H -61.0 -38.2