Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 110257855 | . | G | A | CCDS811.1:NM_000851.3:c.560cGc>cAc_NP_000842.2:p.187R>H | Homo sapiens glutathione S-transferase mu 5 (GSTM5), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1xw6 | 1 | P09488 | 87.61 | 1e-141 |
X-RAY |
2004-12-21 | ARG | A:187 | A:186 | 86.0 | 0.382 | H | -64.3 | -40.0 | 86.0 | 0.382 | 0.0 |
HOH |
2.666 |
NH1 |
O |
||
ARG | B:187 | B:186 | 88.0 | 0.391 | H | -61.5 | -40.7 | 88.0 | 0.391 | 0.0 |
HOH |
2.634 |
NH2 |
O |
|||||||||
ARG | C:187 | C:186 | 86.0 | 0.382 | H | -64.2 | -40.3 | NA | NA | NA | |||||||||||||
ARG | D:187 | D:186 | 84.0 | 0.373 | H | -63.5 | -41.7 | NA | NA | NA | |||||||||||||
1xwk | 1 | P09488 | 87.61 | 1e-141 |
X-RAY |
2004-12-21 | ARG | A:187 | A:186 | 86.0 | 0.382 | H | -57.6 | -38.1 | 86.0 | 0.382 | 0.0 |
HOH |
5.583 |
NH1 |
O |
||
ARG | B:187 | B:186 | 86.0 | 0.382 | H | -63.2 | -30.4 | NA | NA | NA | |||||||||||||
ARG | C:187 | C:186 | 89.0 | 0.396 | H | -57.4 | -36.1 | 89.0 | 0.396 | 0.0 |
HOH |
6.382 |
CD |
O |
|||||||||
1yj6 | 1 | P09488 | 87.61 | 1e-141 |
X-RAY |
2005-02-01 | ARG | A:187 | A:186 | 87.0 | 0.387 | H | -56.2 | -40.8 | 87.0 | 0.387 | 0.0 |
HOH |
3.142 |
NH2 |
O |
||
ARG | B:187 | B:186 | 86.0 | 0.382 | H | -56.5 | -38.3 | 86.0 | 0.382 | 0.0 |
HOH |
3.774 |
NH2 |
O |
|||||||||
ARG | C:187 | C:186 | 85.0 | 0.378 | H | -58.8 | -39.1 | NA | NA | NA | |||||||||||||
2f3m | 1 | P09488 | 87.61 | 1e-141 |
X-RAY |
2006-04-25 | ARG | A:187 | A:186 | 86.0 | 0.382 | H | -44.3 | -51.2 | 86.0 | 0.382 | 0.0 | ||||||
ARG | B:187 | B:186 | 85.0 | 0.378 | H | -41.4 | -52.2 | 85.0 | 0.378 | 0.0 |
HOH |
9.523 |
NE |
O |
|||||||||
ARG | C:187 | C:186 | 84.0 | 0.373 | H | -42.6 | -48.8 | NA | NA | NA | |||||||||||||
ARG | D:187 | D:186 | 81.0 | 0.36 | H | -44.6 | -50.5 | NA | NA | NA | |||||||||||||
ARG | E:187 | E:186 | 84.0 | 0.373 | H | -43.6 | -49.8 | NA | NA | NA | |||||||||||||
ARG | F:187 | F:186 | 84.0 | 0.373 | H | -42.9 | -51.7 | NA | NA | NA | |||||||||||||
7beu | 1 | P09488 | 87.61 | 1e-141 |
X-RAY |
2022-01-12 | ARG | A:187 | A:186 | 85.0 | 0.378 | H | -67.3 | -42.9 | 85.0 | 0.378 | 0.0 |
HOH |
2.437 |
NE |
O |
||
ARG | B:187 | B:186 | 87.0 | 0.387 | H | -67.3 | -42.8 | NA | NA | NA | |||||||||||||
ARG | C:187 | C:186 | 81.0 | 0.36 | H | -63.8 | -46.3 | NA | NA | NA | |||||||||||||
ARG | D:187 | D:186 | 66.0 | 0.293 | H | -69.7 | -39.5 | 66.0 | 0.293 | 0.0 |
HOH |
2.661 |
O |
O |
|||||||||
1gtu | 1 | P09488 | 87.56 | 1e-140 |
X-RAY |
1999-02-02 | ARG | A:186 | A:186 | 88.0 | 0.391 | H | -58.0 | -38.8 | 88.0 | 0.391 | 0.0 | ||||||
ARG | B:186 | B:186 | 94.0 | 0.418 | H | -51.6 | -52.9 | 94.0 | 0.418 | 0.0 | |||||||||||||
ARG | C:186 | C:186 | 89.0 | 0.396 | H | -63.3 | -42.3 | NA | NA | NA | |||||||||||||
ARG | D:186 | D:186 | 88.0 | 0.391 | H | -61.0 | -38.8 | NA | NA | NA | |||||||||||||
2c4j | 1 | P28161 | 81.19 | 8e-134 |
X-RAY |
2005-10-26 | ARG | A:187 | A:187 | 87.0 | 0.387 | H | -65.1 | -43.8 | 87.0 | 0.387 | 0.0 |
HOH |
2.823 |
NH1 |
O |
||
ARG | B:187 | B:187 | 80.0 | 0.356 | H | -61.3 | -43.5 | 80.0 | 0.356 | 0.0 |
HOH |
2.712 |
O |
O |
|||||||||
ARG | C:187 | C:187 | 73.0 | 0.324 | H | -65.8 | -41.0 | NA | NA | NA | |||||||||||||
ARG | D:187 | D:187 | 83.0 | 0.369 | H | -64.6 | -43.0 | NA | NA | NA | |||||||||||||
2dc5 | 1 | 30354091 | 81.57 | 1e-133 |
X-RAY |
2006-06-28 | ARG | A:194 | A:194 | 82.0 | 0.364 | H | -60.8 | -42.1 | 82.0 | 0.364 | 0.0 |
HOH |
2.747 |
O |
O |
||
ARG | B:194 | B:194 | 90.0 | 0.4 | H | -63.8 | -45.1 | 90.0 | 0.4 | 0.0 |
HOH |
2.687 |
O |
O |
|||||||||
4gtu | 1 | Q03013 | 83.33 | 2e-133 |
X-RAY |
2000-01-14 | ARG | A:186 | A:186 | 88.0 | 0.391 | H | -64.8 | -50.9 | 88.0 | 0.391 | 0.0 | ||||||
ARG | B:186 | B:186 | 94.0 | 0.418 | H | -60.9 | -47.0 | 94.0 | 0.418 | 0.0 | |||||||||||||
ARG | C:186 | C:186 | 88.0 | 0.391 | H | -67.4 | -43.4 | NA | NA | NA | |||||||||||||
ARG | D:186 | D:186 | 94.0 | 0.418 | H | -66.7 | -45.5 | NA | NA | NA | |||||||||||||
ARG | E:186 | E:186 | 74.0 | 0.329 | H | -87.9 | -42.4 | NA | NA | NA | |||||||||||||
ARG | F:186 | F:186 | 80.0 | 0.356 | H | -71.3 | -17.6 | NA | NA | NA | |||||||||||||
ARG | G:186 | G:186 | 79.0 | 0.351 | H | -68.9 | -49.6 | NA | NA | NA | |||||||||||||
ARG | H:186 | H:186 | 95.0 | 0.422 | H | -64.2 | -44.7 | NA | NA | NA | |||||||||||||
1xw5 | 1 | P28161 | 81.11 | 1e-132 |
X-RAY |
2004-11-30 | ARG | A:186 | A:186 | 90.0 | 0.4 | H | -60.1 | -48.6 | 90.0 | 0.4 | 0.0 |
HOH |
2.620 |
O |
O |
||
ARG | B:186 | B:186 | 89.0 | 0.396 | H | -62.3 | -40.1 | 89.0 | 0.396 | 0.0 |
HOH |
2.649 |
NH2 |
O |
|||||||||
1ykc | 1 | P28161 | 81.11 | 1e-132 |
X-RAY |
2005-01-25 | ARG | A:186 | A:186 | 83.0 | 0.369 | H | -51.9 | -48.2 | 83.0 | 0.369 | 0.0 |
HOH |
2.746 |
O |
O |
||
ARG | B:186 | B:186 | 85.0 | 0.378 | H | -56.8 | -49.9 | 85.0 | 0.378 | 0.0 |
HOH |
2.879 |
O |
O |
|||||||||
2ab6 | 1 | P28161 | 81.11 | 1e-132 |
X-RAY |
2005-08-02 | ARG | A:186 | A:186 | 82.0 | 0.364 | H | -47.4 | -52.0 | 82.0 | 0.364 | 0.0 |
HOH |
4.620 |
N |
O |
||
ARG | B:186 | B:186 | 84.0 | 0.373 | H | -49.1 | -48.4 | 84.0 | 0.373 | 0.0 |
HOH |
4.030 |
NH2 |
O |
|||||||||
ARG | C:186 | C:186 | 80.0 | 0.356 | H | -39.6 | -52.6 | NA | NA | NA | |||||||||||||
ARG | D:186 | D:186 | 82.0 | 0.364 | H | -48.5 | -46.1 | NA | NA | NA | |||||||||||||
2gtu | 1 | P28161 | 81.11 | 1e-132 |
X-RAY |
1999-03-02 | ARG | A:186 | A:186 | 86.0 | 0.382 | H | -67.0 | -43.8 | 86.0 | 0.382 | 0.0 |
HOH |
2.722 |
NH2 |
O |
||
ARG | B:186 | B:186 | 82.0 | 0.364 | H | -68.8 | -42.1 | 82.0 | 0.364 | 0.0 |
HOH |
2.603 |
NH2 |
O |
|||||||||
3gtu | 1 | P28161 | 81.11 | 1e-132 |
X-RAY |
1999-07-29 | ARG | A:186 | A:186 | 83.0 | 0.369 | H | -58.1 | -40.1 | 83.0 | 0.369 | 0.0 | ||||||
ARG | C:186 | C:186 | 83.0 | 0.369 | H | -58.4 | -38.8 | NA | NA | NA | |||||||||||||
3gur | 1 | P28161 | 81.11 | 1e-132 |
X-RAY |
2009-10-27 | ARG | A:186 | A:186 | 86.0 | 0.382 | H | -62.5 | -42.6 | 86.0 | 0.382 | 0.0 |
HOH |
2.874 |
NH2 |
O |
||
ARG | B:186 | B:186 | 85.0 | 0.378 | H | -64.3 | -45.7 | 85.0 | 0.378 | 0.0 |
HOH |
2.733 |
O |
O |
|||||||||
ARG | C:186 | C:186 | 85.0 | 0.378 | H | -57.8 | -48.8 | NA | NA | NA | |||||||||||||
ARG | D:186 | D:186 | 88.0 | 0.391 | H | -57.5 | -58.9 | NA | NA | NA | |||||||||||||
5hwl | 1 | P28161 | 81.11 | 1e-132 |
X-RAY |
2017-11-08 | ARG | A:186 | A:186 | 87.0 | 0.387 | H | -62.7 | -47.7 | 87.0 | 0.387 | 0.0 |
HOH |
2.831 |
O |
O |
||
ARG | B:186 | B:186 | 85.0 | 0.378 | H | -58.2 | -49.9 | 85.0 | 0.378 | 0.0 |
HOH |
2.848 |
NH2 |
O |
|||||||||
1hna | 1 | P28161 | 80.65 | 2e-131 |
X-RAY |
1994-01-31 | ARG | A:186 | A:186 | 88.0 | 0.391 | H | -65.6 | -34.1 | 88.0 | 0.391 | 0.0 |
HOH |
2.784 |
NH2 |
O |
||
1hnb | 1 | P28161 | 80.65 | 2e-131 |
X-RAY |
1994-01-31 | ARG | A:186 | A:186 | 86.0 | 0.382 | H | -76.6 | -43.3 | 86.0 | 0.382 | 0.0 | ||||||
ARG | B:186 | B:186 | 84.0 | 0.373 | H | -55.5 | -49.7 | 84.0 | 0.373 | 0.0 | |||||||||||||
1hnc | 1 | P28161 | 80.65 | 2e-131 |
X-RAY |
1994-01-31 | ARG | A:186 | A:186 | 68.0 | 0.302 | H | -54.8 | -44.1 | 68.0 | 0.302 | 0.0 | ||||||
ARG | B:186 | B:186 | 82.0 | 0.364 | H | -61.3 | -40.9 | 82.0 | 0.364 | 0.0 | |||||||||||||
ARG | C:186 | C:186 | 83.0 | 0.369 | H | -61.5 | -59.9 | NA | NA | NA | |||||||||||||
ARG | D:186 | D:186 | 93.0 | 0.413 | H | -67.0 | -41.8 | NA | NA | NA |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p46439-f1 | 1 | P46439 | 100.0 | 5e-163 | ARG | A:187 | A:187 | 112.0 | 0.498 | H | -61.9 | -44.8 | |
af-p09488-f1 | 1 | P09488 | 87.61 | 6e-142 | ARG | A:187 | A:187 | 109.0 | 0.484 | H | -65.1 | -44.3 | |
af-q03013-f1 | 1 | Q03013 | 83.03 | 1e-134 | ARG | A:187 | A:187 | 109.0 | 0.484 | H | -64.4 | -44.0 | |
af-p28161-f1 | 1 | P28161 | 81.19 | 6e-134 | ARG | A:187 | A:187 | 75.0 | 0.333 | H | -64.6 | -40.9 |