Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 110260023 . A C CCDS811.1:NM_000851.3:c.632aAg>aCg_NP_000842.2:p.211K>T Homo sapiens glutathione S-transferase mu 5 (GSTM5), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1xw6 1 P09488 87.61 1e-141 X-RAY
 2004-12-21 LYS A:211 A:210 44.0 0.22 T -60.6 -19.7 44.0 0.22 0.0 HOH
 2.736
 NZ
 O
LYS B:211 B:210 43.0 0.215 T -60.4 -18.8 43.0 0.215 0.0 GSH
HOH
 9.891
2.755
 N
O
 CB2
O
LYS C:211 C:210 39.0 0.195 T -60.3 -19.5 NA NA NA
LYS D:211 D:210 38.0 0.19 T -60.8 -17.6 NA NA NA
1xwk 1 P09488 87.61 1e-141 X-RAY
 2004-12-21 LYS A:211 A:210 49.0 0.245 T -61.5 -26.6 49.0 0.245 0.0 GDN
HOH
 9.441
3.426
 N
CE
 C5'
O
LYS B:211 B:210 69.0 0.345 T -61.4 -23.6 NA NA NA
LYS C:211 C:210 55.0 0.275 T -64.9 -25.3 55.0 0.275 0.0 GDN
HOH
 9.258
3.408
 N
NZ
 C5'
O
1yj6 1 P09488 87.61 1e-141 X-RAY
 2005-02-01 LYS A:211 A:210 71.0 0.355 T -66.2 -24.1 71.0 0.355 0.0 ZN
HOH
 8.934
3.432
 N
CG
 ZN
O
LYS B:211 B:210 53.0 0.265 T -67.5 -23.1 53.0 0.265 0.0 ZN
HOH
 9.305
7.462
 N
N
 ZN
O
LYS C:211 C:210 70.0 0.35 T -66.4 -23.1 NA NA NA
2f3m 1 P09488 87.61 1e-141 X-RAY
 2006-04-25 LYS A:211 A:210 79.0 0.395 T -65.5 -29.1 79.0 0.395 0.0 GTD
HOH
 7.398
6.699
 N
N
 O21
O
LYS B:211 B:210 75.0 0.375 T -64.9 -27.3 75.0 0.375 0.0 GTD
HOH
 7.488
3.848
 N
CE
 O21
O
LYS C:211 C:210 68.0 0.34 T -65.4 -27.0 NA NA NA
LYS D:211 D:210 70.0 0.35 T -64.8 -27.7 NA NA NA
LYS E:211 E:210 76.0 0.38 T -65.3 -30.0 NA NA NA
LYS F:211 F:210 70.0 0.35 T -64.1 -28.2 NA NA NA
7beu 1 P09488 87.61 1e-141 X-RAY
 2022-01-12 LYS A:211 A:210 66.0 0.33 T -63.9 -21.1 66.0 0.33 0.0 HOH
 2.606
 O
 O
LYS B:211 B:210 79.0 0.395 T -63.1 -18.6 NA NA NA
LYS C:211 C:210 66.0 0.33 T -61.6 -23.6 NA NA NA
LYS D:211 D:210 54.0 0.27 T -62.4 -25.9 54.0 0.27 0.0 HOH
 2.823
 O
 O
1gtu 1 P09488 87.56 1e-140 X-RAY
 1999-02-02 LYS A:210 A:210 48.0 0.24 T -54.0 -28.8 48.0 0.24 0.0 HOH
 8.704
 N
 O
LYS B:210 B:210 51.0 0.255 T -57.5 -16.8 51.0 0.255 0.0 HOH
 6.499
 N
 O
LYS C:210 C:210 54.0 0.27 T -49.2 -28.7 NA NA NA
LYS D:210 D:210 52.0 0.26 T -57.0 -21.7 NA NA NA
2c4j 1 P28161 81.19 8e-134 X-RAY
 2005-10-26 LYS A:211 A:211 71.0 0.355 T -63.8 -21.9 71.0 0.355 0.0 GSO
HOH
 6.234
2.694
 N
O
 CG2
O
LYS B:211 B:211 66.0 0.33 T -60.8 -21.7 66.0 0.33 0.0 GSO
HOH
 6.314
2.856
 N
NZ
 CG2
O
LYS C:211 C:211 64.0 0.32 T -64.8 -22.9 NA NA NA
LYS D:211 D:211 81.0 0.405 T -66.7 -19.1 NA NA NA
2dc5 1 30354091 81.57 1e-133 X-RAY
 2006-06-28 LYS A:218 A:218 78.0 0.39 T -63.0 -9.5 78.0 0.39 0.0 HOH
 2.915
 NZ
 O
LYS B:218 B:218 72.0 0.36 T -61.3 -18.0 72.0 0.36 0.0 HOH
 2.772
 O
 O
4gtu 1 Q03013 83.33 2e-133 X-RAY
 2000-01-14 ARG A:210 A:210 67.0 0.298 T -70.4 29.3 67.0 0.298 0.0
ARG B:210 B:210 52.0 0.231 T -49.7 -24.9 52.0 0.231 0.0
ARG C:210 C:210 47.0 0.209 T -72.2 12.0 NA NA NA
ARG D:210 D:210 57.0 0.253 T -59.6 -9.5 NA NA NA
ARG E:210 E:210 38.0 0.169 T -66.2 20.2 NA NA NA
ARG F:210 F:210 62.0 0.276 T -55.3 -38.5 NA NA NA
ARG G:210 G:210 36.0 0.16 T -60.5 -19.2 NA NA NA
ARG H:210 H:210 34.0 0.151 T -53.7 -21.5 NA NA NA
1xw5 1 P28161 81.11 1e-132 X-RAY
 2004-11-30 LYS A:210 A:210 58.0 0.29 T -61.6 -17.0 58.0 0.29 0.0 GSH
HOH
 9.474
2.697
 N
NZ
 CB2
O
LYS B:210 B:210 61.0 0.305 T -61.9 -16.2 61.0 0.305 0.0 GSH
HOH
 9.369
2.657
 N
NZ
 CB2
O
1ykc 1 P28161 81.11 1e-132 X-RAY
 2005-01-25 LYS A:210 A:210 65.0 0.325 T -62.7 -13.0 65.0 0.325 0.0 GDS
HOH
 8.158
3.093
 N
O
 SG2
O
LYS B:210 B:210 70.0 0.35 T -60.5 -18.2 70.0 0.35 0.0 GDS
HOH
 8.166
2.778
 N
N
 SG2
O
2ab6 1 P28161 81.11 1e-132 X-RAY
 2005-08-02 LYS A:210 A:210 69.0 0.345 T -54.7 -18.3 69.0 0.345 0.0 GSM
HOH
 8.545
3.674
 N
CD
 C4
O
LYS B:210 B:210 68.0 0.34 T -56.2 -20.3 68.0 0.34 0.0 GSM
HOH
 8.601
3.063
 N
N
 C4
O
LYS C:210 C:210 68.0 0.34 T -55.1 -16.9 NA NA NA
LYS D:210 D:210 71.0 0.355 T -59.1 -16.6 NA NA NA
2gtu 1 P28161 81.11 1e-132 X-RAY
 1999-03-02 LYS A:210 A:210 38.0 0.19 T -60.5 -24.9 38.0 0.19 0.0 HOH
 8.688
 NZ
 O
LYS B:210 B:210 34.0 0.17 T -64.2 -18.7 34.0 0.17 0.0 HOH
 3.305
 N
 O
3gtu 1 P28161 81.11 1e-132 X-RAY
 1999-07-29 LYS A:210 A:210 58.0 0.29 T -45.0 -24.2 58.0 0.29 0.0 HOH
 7.870
 N
 O
LYS C:210 C:210 61.0 0.305 T -45.4 -23.5 NA NA NA
3gur 1 P28161 81.11 1e-132 X-RAY
 2009-10-27 LYS A:210 A:210 75.0 0.375 T -58.7 -18.3 75.0 0.375 0.0 BYG
HOH
 7.092
3.014
 N
N
 S1
O
LYS B:210 B:210 86.0 0.43 T -56.4 -13.1 86.0 0.43 0.0 HOH
 8.748
 N
 O
LYS C:210 C:210 75.0 0.375 T -56.6 -20.0 NA NA NA
LYS D:210 D:210 80.0 0.4 T -71.4 -12.3 NA NA NA
5hwl 1 P28161 81.11 1e-132 X-RAY
 2017-11-08 LYS A:210 A:210 25.0 NA T -55.9 -29.5 25.0 NA NA GSH
NNE
HOH
 9.422
7.722
3.101
 N
N
N
 CB2
CBN
O
LYS B:210 B:210 93.0 0.465 T -57.7 -27.4 93.0 0.465 0.0 GSH
NNE
HOH
 9.452
8.125
3.230
 N
N
N
 CB2
CAN
O
1hna 1 P28161 80.65 2e-131 X-RAY
 1994-01-31 LYS A:210 A:210 33.0 0.165 T -60.1 -26.2 33.0 0.165 0.0 HOH
 5.755
 NZ
 O
1hnb 1 P28161 80.65 2e-131 X-RAY
 1994-01-31 LYS A:210 A:210 26.0 0.13 S -120.9 138.0 26.0 0.13 0.0 GDN
 9.654
 O
 SG2
LYS B:210 B:210 28.0 0.14 T -63.9 -13.4 28.0 0.14 0.0
1hnc 1 P28161 80.65 2e-131 X-RAY
 1994-01-31 LYS A:210 A:210 53.0 0.265 -137.3 133.5 53.0 0.265 0.0 GDN
 7.232
 O
 SG2
LYS B:210 B:210 78.0 0.39 H 73.8 -48.3 78.0 0.39 0.0 GDN
 9.261
 O
 CB2
LYS C:210 C:210 69.0 0.345 T 72.2 -47.6 NA NA NA
LYS D:210 D:210 22.0 0.11 -173.4 49.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p46439-f1 1 P46439 100.0 5e-163 LYS A:211 A:211 63.0 0.315 T -55.8 -19.9
af-p09488-f1 1 P09488 87.61 6e-142 LYS A:211 A:211 66.0 0.33 T -54.8 -22.4
af-q03013-f1 1 Q03013 83.03 1e-134 ARG A:211 A:211 97.0 0.431 T -55.6 -21.7
af-p28161-f1 1 P28161 81.19 6e-134 LYS A:211 A:211 62.0 0.31 T -55.1 -20.6