Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 110946610 . G A CCDS824.1:NM_006402.2:c.392gCc>gTc_NP_006393.2:p.131A>V Homo sapiens late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 (LAMTOR5), mRNA.
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6b9x 5 A0A0C4DGV4 100.0 8e-127 X-RAY
 2017-11-08 ALA E:131 E:131 6.0 0.052 H -61.8 -41.1 6.0 0.052 0.0 HOH
 2.825
 O
 O
6nzd 5 A0A0C4DGV4 100.0 8e-127 EM
 2019-11-06 ALA E:131 E:131 7.0 0.061 H -61.9 -41.0 7.0 0.061 0.0
6wj2 5 A0A0C4DGV4 100.0 8e-127 EM
 2020-09-02 ALA E:131 E:131 9.0 0.078 H -75.1 -41.0 9.0 0.078 0.0
6wj3 5 A0A0C4DGV4 100.0 8e-127 EM
 2020-09-02 ALA E:131 E:131 8.0 0.07 H -61.9 -43.3 8.0 0.07 0.0
5y3a 5 O43504 98.91 1e-61 X-RAY
 2017-12-27 ALA E:51 E:131 6.0 0.052 H -62.7 -33.1 6.0 0.052 0.0
ALA J:51 J:131 6.0 0.052 H -74.9 -44.0 NA NA NA
5vok 1 O43504 100.0 2e-61 X-RAY
 2018-05-23 ALA A:49 A:49 7.0 0.061 H -59.4 -42.4 7.0 0.061 0.0
ALA C:49 C:49 16.0 0.139 H -62.0 -50.4 NA NA NA
ALA E:49 E:49 11.0 0.096 H -52.5 -45.8 NA NA NA
ALA G:49 G:49 16.0 0.139 H -66.7 -38.9 NA NA NA
5x6u 3 O43504 100.0 2e-61 X-RAY
 2017-12-06 ALA C:49 C:49 6.0 0.052 H -66.7 -39.0 6.0 0.052 0.0 HOH
 2.594
 O
 O
5x6v 3 O43504 100.0 2e-61 X-RAY
 2017-12-06 ALA C:49 C:49 9.0 0.078 H -66.5 -38.0 9.0 0.078 0.0 HOH
 2.676
 O
 O
5y38 1 O43504 100.0 2e-61 X-RAY
 2017-12-06 ALA A:49 A:131 1.0 0.009 H -55.1 -50.4 1.0 0.009 0.0 SO4
HOH
 6.659
4.044
 CB
CB
 O2
O
5yk3 8 O43504 100.0 2e-61 X-RAY
 2019-01-23 ALA H:49 E:49 6.0 0.052 H -57.5 -34.0 NA NA NA
ALA M:49 J:49 6.0 0.052 H -58.5 -47.1 NA NA NA
6ehp 3 O43504 100.0 2e-61 X-RAY
 2017-10-04 ALA C:49 C:49 6.0 0.052 H -64.2 -41.1 6.0 0.052 0.0 HOH
 2.641
 O
 O
6ehr 3 O43504 100.0 2e-61 X-RAY
 2017-10-04 ALA C:49 C:49 9.0 0.078 H -75.4 -39.3 9.0 0.078 0.0
6u62 8 O43504 100.0 2e-61 EM
 2019-10-30 ALA H:49 H:49 6.0 0.052 H -68.3 -38.9 6.0 0.052 0.0
6ulg 4 O43504 100.0 2e-61 EM
 2019-11-20 ALA D:49 C:49 5.0 0.043 H -67.5 -36.9 5.0 0.043 0.0
3ms6 1 O43504 100.0 2e-61 X-RAY
 2010-11-10 ALA A:49 A:49 10.0 0.087 H -71.4 -38.2 10.0 0.087 0.0 HOH
 3.780
 CB
 O
3msh 1 O43504 100.0 2e-61 X-RAY
 2010-11-10 ALA A:49 A:49 12.0 0.104 H -65.1 -42.3 12.0 0.104 0.0 HOH
 3.721
 CB
 O
5y39 5 O43504 100.0 6e-61 X-RAY
 2017-12-06 ALA E:49 E:131 7.0 0.061 H -58.7 -41.0 7.0 0.061 0.0 HOH
 2.987
 O
 O
ALA J:49 J:131 6.0 0.052 H -61.8 -48.1 NA NA NA
5yk3 3 O43504 100.0 6e-61 X-RAY
 2019-01-23 ALA C:49 o:49 6.0 0.052 H -57.9 -50.8 6.0 0.052 0.0
5yk5 2 O43504 100.0 2e-59 X-RAY
 2018-12-12 ALA B:48 B:49 8.0 0.07 H -64.4 -42.0 8.0 0.07 0.0 HOH
 3.886
 CB
 O
5yk5 4 O43504 100.0 7e-58 X-RAY
 2018-12-12 ALA D:46 D:49 8.0 0.07 H -64.6 -45.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o43504-f1 1 O43504 100.0 7e-62 ALA A:49 A:49 8.0 0.07 H -61.9 -42.3