Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 110948988 . A C CCDS824.1:NM_006402.2:c.295Tcc>Gcc_NP_006393.2:p.99S>A Homo sapiens late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 (LAMTOR5), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6b9x 5 A0A0C4DGV4 100.0 8e-127 X-RAY
 2017-11-08 SER E:99 E:99 30.0 0.261 T -79.0 -19.1 30.0 0.261 0.0 HOH
 3.683
 CA
 O
6nzd 5 A0A0C4DGV4 100.0 8e-127 EM
 2019-11-06 SER E:99 E:99 31.0 0.27 T -79.0 -19.0 30.0 0.261 0.009 A:Q6IAA8:0.009
6wj2 5 A0A0C4DGV4 100.0 8e-127 EM
 2020-09-02 SER E:99 E:99 61.0 0.53 T -102.9 -3.0 61.0 0.53 0.0
6wj3 5 A0A0C4DGV4 100.0 8e-127 EM
 2020-09-02 SER E:99 E:99 33.0 0.287 S -105.1 -33.8 33.0 0.287 0.0
5y3a 5 O43504 98.91 1e-61 X-RAY
 2017-12-27 SER E:19 E:99 50.0 0.435 T -89.7 -10.5 50.0 0.435 0.0 SO4
HOH
 3.832
4.391
 OG
N
 O2
O
SER J:19 J:99 40.0 0.348 T -96.0 -3.8 NA NA NA
5vok 1 O43504 100.0 2e-61 X-RAY
 2018-05-23 SER A:17 A:17 51.0 0.443 S -64.8 -47.5 51.0 0.443 0.0
SER C:17 C:17 42.0 0.365 T -79.2 -37.2 NA NA NA
SER E:17 E:17 43.0 0.374 T -60.0 -35.2 NA NA NA
SER G:17 G:17 43.0 0.374 T -89.3 -16.9 NA NA NA
5x6u 3 O43504 100.0 2e-61 X-RAY
 2017-12-06 SER C:17 C:17 30.0 0.261 T -107.1 2.0 30.0 0.261 0.0 HOH
 3.546
 N
 O
5x6v 3 O43504 100.0 2e-61 X-RAY
 2017-12-06 SER C:17 C:17 12.0 0.104 T -86.1 -8.8 12.0 0.104 0.0 NA
HOH
 4.780
3.791
 N
OG
 NA
O
5y38 1 O43504 100.0 2e-61 X-RAY
 2017-12-06 SER A:17 A:99 48.0 0.417 T -89.0 -16.1 48.0 0.417 0.0 SO4
HOH
 5.299
3.635
 N
OG
 O4
O
5yk3 8 O43504 100.0 2e-61 X-RAY
 2019-01-23 SER H:17 E:17 23.0 0.2 S -85.6 -14.3 NA NA NA
SER M:17 J:17 28.0 0.243 T -83.7 -13.8 NA NA NA
6ehp 3 O43504 100.0 2e-61 X-RAY
 2017-10-04 SER C:17 C:17 15.0 0.13 T -115.6 4.4 15.0 0.13 0.0 HOH
 7.971
 N
 O
6ehr 3 O43504 100.0 2e-61 X-RAY
 2017-10-04 SER C:17 C:17 11.0 0.096 S -73.5 -29.2 11.0 0.096 0.0
6u62 8 O43504 100.0 2e-61 EM
 2019-10-30 SER H:17 H:17 64.0 0.557 T -91.4 -18.5 64.0 0.557 0.0
6ulg 4 O43504 100.0 2e-61 EM
 2019-11-20 SER D:17 C:17 27.0 0.235 T -87.9 12.5 25.0 0.217 0.018 F:Q6IAA8:0.017
3ms6 1 O43504 100.0 2e-61 X-RAY
 2010-11-10 SER A:17 A:17 44.0 0.383 T -87.9 -5.3 44.0 0.383 0.0 GOL
HOH
 8.455
3.451
 O
OG
 C1
O
3msh 1 O43504 100.0 2e-61 X-RAY
 2010-11-10 SER A:17 A:17 52.0 0.452 T -82.8 -18.3 52.0 0.452 0.0 GOL
HOH
 4.624
2.614
 N
O
 O3
O
5y39 5 O43504 100.0 6e-61 X-RAY
 2017-12-06 SER E:17 E:99 36.0 0.313 T -84.1 -6.7 36.0 0.313 0.0 HOH
 4.948
 N
 O
SER J:17 NA:NA DO NA DO DO DO NA NA NA
5yk3 3 O43504 100.0 6e-61 X-RAY
 2019-01-23 SER C:17 o:17 39.0 0.339 S -76.4 -13.6 39.0 0.339 0.0
5yk5 2 O43504 100.0 2e-59 X-RAY
 2018-12-12 SER B:16 B:17 36.0 0.313 S -97.1 -14.9 36.0 0.313 0.0 HOH
 4.958
 N
 O
5yk5 4 O43504 100.0 7e-58 X-RAY
 2018-12-12 SER D:14 D:17 39.0 0.339 T -90.9 -7.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o43504-f1 1 O43504 100.0 7e-62 SER A:17 A:17 28.0 0.243 T -86.9 -12.5