Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 156027791 . G A CCDS1128.1:NM_014017.3:c.254cGa>cAa_NP_054736.1:p.85R>Q Homo sapiens late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 (LAMTOR2), transcript variant 1, mRNA.
pdb_id: 
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label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6b9x 2 Q9Y2Q5 100.0 2e-89 X-RAY
 2017-11-08 ARG B:86 B:85 82.0 0.364 E -86.2 144.1 82.0 0.364 0.0 HOH
 2.516
 NH1
 O
5y3a 2 Q9Y2Q5 100.0 2e-89 X-RAY
 2017-12-27 ARG B:87 B:85 101.0 0.449 E -116.6 137.3 101.0 0.449 0.0
ARG G:87 G:85 84.0 0.373 E -97.2 144.1 NA NA NA
5x6u 2 Q9Y2Q5 100.0 2e-89 X-RAY
 2017-12-06 ARG B:85 B:85 65.0 0.289 E -99.2 142.1 65.0 0.289 0.0 HOH
 2.829
 CD
 O
5x6v 2 Q9Y2Q5 100.0 2e-89 X-RAY
 2017-12-06 ARG B:85 B:85 141.0 0.627 E -85.2 149.8 141.0 0.627 0.0 HOH
 2.680
 O
 O
5y39 2 Q9Y2Q5 100.0 2e-89 X-RAY
 2017-12-06 ARG B:85 B:85 66.0 0.293 E -87.6 147.7 66.0 0.293 0.0 HOH
 3.413
 CB
 O
ARG G:85 G:85 77.0 0.342 E -87.3 149.0 NA NA NA
5yk3 2 Q9Y2Q5 100.0 2e-89 X-RAY
 2019-01-23 ARG B:85 l:85 72.0 0.32 E -84.7 136.6 72.0 0.32 0.0
ARG L:85 G:85 65.0 0.289 E -89.4 129.0 NA NA NA
6u62 5 Q9Y2Q5 100.0 2e-89 EM
 2019-10-30 ARG E:85 E:85 90.0 0.4 E -106.9 152.6 90.0 0.4 0.0
6ulg 3 Q9Y2Q5 100.0 2e-89 EM
 2019-11-20 ARG C:85 B:85 96.0 0.427 -96.1 121.0 96.0 0.427 0.0
6nzd 2 Q9Y2Q5 100.0 3e-89 EM
 2019-11-06 ARG B:87 B:85 79.0 0.351 E -86.2 144.1 79.0 0.351 0.0
6wj2 2 Q9Y2Q5 100.0 3e-89 EM
 2020-09-02 ARG B:87 B:85 98.0 0.436 -145.4 152.7 98.0 0.436 0.0
6wj3 2 Q9Y2Q5 100.0 3e-89 EM
 2020-09-02 ARG B:87 B:85 91.0 0.404 -141.5 155.2 91.0 0.404 0.0
1vet 2 Q9JHS3 99.2 1e-88 X-RAY
 2004-08-03 ARG B:85 B:85 85.0 0.378 E -84.9 151.8 85.0 0.378 0.0 HOH
 2.320
 O
 O
2zl1 2 Q9JHS3 99.19 1e-88 X-RAY
 2008-06-24 ARG B:91 B:85 69.0 0.307 E -99.0 140.5 69.0 0.307 0.0 HOH
 2.759
 O
 O
1veu 2 Q9JHS3 99.2 1e-88 X-RAY
 2004-08-03 ARG B:86 B:85 69.0 0.307 E -92.3 151.5 69.0 0.307 0.0 HOH
 2.690
 O
 O
6ehp 2 Q9Y2Q5 100.0 2e-88 X-RAY
 2017-10-04 ARG B:86 B:85 61.0 0.271 E -83.3 143.2 61.0 0.271 0.0 HOH
 2.734
 NH2
 O
6ehr 2 Q9Y2Q5 100.0 2e-88 X-RAY
 2017-10-04 ARG B:86 B:85 139.0 0.618 E -100.2 130.8 139.0 0.618 0.0
1sko 2 Q9JHS3 99.19 7e-88 X-RAY
 2004-06-01 ARG B:91 B:84 81.0 0.36 E -88.8 145.8 81.0 0.36 0.0 HOH
 2.552
 NH1
 O
3cpt 2 Q9JHS3 98.39 3e-87 X-RAY
 2008-07-01 ARG B:91 B:85 74.0 0.329 E -86.4 143.1 74.0 0.329 0.0 HOH
 2.681
 O
 O
5yk3 7 Q9Y2Q5 98.36 8e-86 X-RAY
 2019-01-23 ARG G:85 B:85 72.0 0.32 E -84.3 126.6 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9y2q5-f1 1 Q9Y2Q5 100.0 1e-89 ARG A:85 A:85 79.0 0.351 E -78.9 145.9