Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 158151280 . A C CCDS1173.1:NM_001766.3:c.97Atc>Ctc_NP_001757.1:p.33I>L Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1zt4 1 P15813 100.0 0.0 X-RAY
 2005-07-19 ILE A:15 A:15 69.0 0.394 E -120.3 108.9 0.0 0.0 0.394 B:P61769:0.394
 AGH
HOH
 6.833
5.763
 N
CD1
 CAK
O
ILE C:15 C:15 73.0 0.417 E -116.4 112.1 NA NA NA
6v7y 1 P15813 100.0 0.0 X-RAY
 2020-09-16 ILE A:12 A:12 68.0 0.389 E -119.8 119.9 5.0 0.029 0.36 B:P61769:0.36
 NAG
AGH
HOH
 9.430
6.960
2.973
 O
N
O
 C1
CAK
O
6v7z 1 P15813 100.0 0.0 X-RAY
 2020-09-16 ILE A:12 A:15 68.0 0.389 E -122.6 107.1 7.0 0.04 0.349 B:P61769:0.349
 NAG
AGH
HOH
 9.516
6.644
7.464
 O
N
CG2
 C1
CAL
O
ILE C:12 C:15 68.0 0.389 E -124.7 113.5 NA NA NA
6v80 1 P15813 100.0 0.0 X-RAY
 2020-09-16 ILE A:12 A:15 86.0 0.491 E -128.7 128.1 18.0 0.103 0.388 B:P61769:0.389
 AGH
 6.554
 N
 CAL
ILE F:12 F:15 96.0 0.549 E -129.7 123.1 NA NA NA
4wwk 3 P15813 99.28 0.0 X-RAY
 2016-02-03 ILE C:16 C:15 65.0 0.371 E -125.8 107.9 9.0 0.051 0.32 D:P61769:0.32
 NAG
JLS
 9.721
6.565
 O
N
 C1
CAM
3huj 1 P15813 99.28 0.0 X-RAY
 2009-07-28 ILE A:16 A:15 59.0 0.337 E -117.5 122.4 2.0 0.011 0.326 B:P61769:0.326
 NAG
AGH
HOH
 9.456
7.001
3.134
 O
N
O
 C1
CAL
O
ILE C:16 C:15 77.0 0.44 E -126.2 107.2 NA NA NA
3vwj 1 P15813 99.28 0.0 X-RAY
 2012-10-03 ILE A:16 A:15 74.0 0.423 E -120.7 117.6 4.0 0.023 0.4 B:P61769:0.4
 NAG
DB3
HOH
 9.991
6.804
9.712
 O
N
CD1
 C1
CAL
O
3vwk 1 P15813 99.28 0.0 X-RAY
 2012-10-03 ILE A:16 A:15 68.0 0.389 E -132.1 120.3 7.0 0.04 0.349 B:P61769:0.349
 NAG
4GH
 9.630
7.033
 O
N
 C1
CAM
4ww2 3 P15813 99.28 0.0 X-RAY
 2016-02-03 ILE C:16 C:15 77.0 0.44 E -115.2 111.6 6.0 0.034 0.406 D:P61769:0.406
 NAG
JLS
HOH
 9.704
6.542
9.406
 O
N
CG1
 C1
CAL
O
4en3 1 P15813 100.0 0.0 X-RAY
 2012-10-31 ILE A:16 C:15 74.0 0.423 E -126.6 100.0 10.0 0.057 0.366 D:P61769:0.366
 NAG
AGH
HOH
 9.232
6.320
2.517
 O
N
O
 O7
CAL
O
3sdx 1 P15813 100.0 0.0 X-RAY
 2011-10-05 ILE A:10 A:15 76.0 0.434 E -130.3 108.5 8.0 0.046 0.388 B:P61769:0.389
 GCY
HOH
 7.427
6.651
 N
CD1
 CAM
O
ILE F:10 C:15 76.0 0.434 E -132.0 106.0 NA NA NA
2po6 1 P15813 100.0 0.0 X-RAY
 2007-07-03 ILE A:10 A:15 56.0 0.32 E -129.9 112.0 0.0 0.0 0.32 B:P61769:0.32
 NAG
AGH
 9.410
7.399
 O
N
 C1
CAK
ILE E:10 E:15 77.0 0.44 E -111.3 109.6 NA NA NA
4lhu 1 P15813 100.0 0.0 X-RAY
 2013-10-02 ILE A:10 A:15 73.0 0.417 E -118.7 109.9 10.0 0.057 0.36 B:P61769:0.36
 NAG
JLS
HOH
 9.305
6.696
9.786
 O
N
O
 C1
CAM
O
4wo4 1 P15813 100.0 0.0 X-RAY
 2014-11-26 ILE A:10 A:15 76.0 0.434 E -119.0 112.2 7.0 0.04 0.394 B:P61769:0.394
 NAG
JLS
HOH
 9.596
6.660
2.738
 O
N
O
 C1
CAM
O
3u0p 1 P15813 98.91 0.0 X-RAY
 2012-04-25 ILE A:16 A:15 78.0 0.446 E -123.5 103.1 6.0 0.034 0.412 B:P61769:0.411
 UND
HOH
 6.636
2.852
 N
O
 C8
O
ILE C:16 C:15 78.0 0.446 E -113.8 96.3 NA NA NA
ILE E:16 E:15 75.0 0.429 E -112.3 108.3 NA NA NA
3tzv 3 P15813 98.91 0.0 X-RAY
 2012-04-25 ILE C:14 C:15 68.0 0.389 E -126.3 113.5 4.0 0.023 0.366 D:P61769:0.366
 HEX
D12
 7.577
6.280
 N
N
 C6
C1
4mng 2 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 ILE B:16 A:15 83.0 0.474 E -117.0 113.4 14.0 0.08 0.394 A:P01887:0.394
 NAG
CIS
 9.667
6.542
 O
N
 C1
C29
ILE D:16 C:15 83.0 0.474 E -117.1 113.5 NA NA NA
4mq7 1 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 ILE A:16 A:15 84.0 0.48 E -120.6 102.4 11.0 0.063 0.417 B:P01887:0.417
 NAG
CIS
HOH
 9.140
6.645
2.745
 O
N
O
 C1
C31
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15813-f1 1 P15813 100.0 0.0 ILE A:33 A:33 78.0 0.446 E -124.8 114.3