Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 158151379 . C A CCDS1173.1:NM_001766.3:c.196Cgc>Agc_NP_001757.1:p.66R>S Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1zt4 1 P15813 100.0 0.0 X-RAY
 2005-07-19 ARG A:48 A:48 151.0 0.671 E -70.6 133.1 139.0 0.618 0.053 B:P61769:0.053
 AGH
HOH
 6.711
7.673
 O
NH2
 CAP
O
ARG C:48 C:48 151.0 0.671 E -78.2 118.4 NA NA NA
6v7y 1 P15813 100.0 0.0 X-RAY
 2020-09-16 ARG A:45 A:45 149.0 0.662 E -69.8 138.1 149.0 0.662 0.0 AGH
CL
HOH
 6.760
8.333
2.500
 O
CG
CG
 CAQ
CL
O
6v7z 1 P15813 100.0 0.0 X-RAY
 2020-09-16 ARG A:45 A:48 133.0 0.591 E -82.0 140.5 133.0 0.591 0.0 AGH
BGC
HOH
 6.527
9.630
7.784
 O
O
N
 CAQ
O1
O
ARG C:45 C:48 41.0 NA E -79.1 145.0 NA NA NA
6v80 1 P15813 100.0 0.0 X-RAY
 2020-09-16 ARG A:45 A:48 154.0 0.684 E -96.1 116.7 154.0 0.684 0.0 AGH
 7.150
 O
 CAR
ARG F:45 F:48 144.0 0.64 E -91.5 108.1 NA NA NA
4wwk 3 P15813 99.28 0.0 X-RAY
 2016-02-03 ARG C:49 C:48 147.0 0.653 E -68.7 127.8 140.0 0.622 0.031 D:P61769:0.031
 JLS
 6.918
 O
 CAQ
3huj 1 P15813 99.28 0.0 X-RAY
 2009-07-28 ARG A:49 A:48 142.0 0.631 E -99.8 138.1 136.0 0.604 0.027 B:P61769:0.027
 AGH
HOH
 6.614
2.794
 O
NH2
 CAQ
O
ARG C:49 C:48 148.0 0.658 E -85.9 144.3 NA NA NA
3vwj 1 P15813 99.28 0.0 X-RAY
 2012-10-03 ARG A:49 A:48 42.0 NA E -84.6 147.8 42.0 NA NA DB3
 6.609
 O
 CAQ
3vwk 1 P15813 99.28 0.0 X-RAY
 2012-10-03 ARG A:49 A:48 160.0 0.711 E -97.6 129.7 160.0 0.711 0.0 4GH
HOH
 6.783
9.083
 O
NH1
 CAQ
O
4ww2 3 P15813 99.28 0.0 X-RAY
 2016-02-03 ARG C:49 C:48 157.0 0.698 E -85.4 129.4 154.0 0.684 0.014 D:P61769:0.013
 JLS
HOH
 6.668
3.358
 O
CG
 CAP
O
4en3 1 P15813 100.0 0.0 X-RAY
 2012-10-31 ARG A:49 C:48 128.0 0.569 E -91.5 132.8 123.0 0.547 0.022 D:P61769:0.022
 AGH
HOH
 6.891
5.124
 O
NH2
 CAQ
O
3sdx 1 P15813 100.0 0.0 X-RAY
 2011-10-05 ARG A:43 A:48 165.0 0.733 E -75.2 124.0 161.0 0.716 0.017 B:P61769:0.018
 HOH
 2.901
 NH2
 O
ARG F:43 C:48 165.0 0.733 E -80.0 123.6 NA NA NA
2po6 1 P15813 100.0 0.0 X-RAY
 2007-07-03 ARG A:43 A:48 141.0 0.627 E -77.9 138.5 130.0 0.578 0.049 B:P61769:0.049
 AGH
 6.548
 O
 CAQ
ARG E:43 E:48 153.0 0.68 E -94.1 135.1 NA NA NA
4lhu 1 P15813 100.0 0.0 X-RAY
 2013-10-02 ARG A:43 A:48 161.0 0.716 E -66.3 123.9 150.0 0.667 0.049 B:P61769:0.049
 JLS
HOH
 7.291
4.197
 O
CD
 CAP
O
4wo4 1 P15813 100.0 0.0 X-RAY
 2014-11-26 ARG A:43 A:48 155.0 0.689 E -98.3 110.6 137.0 0.609 0.08 B:P61769:0.08
 JLS
HOH
 6.734
3.009
 O
NE
 CAR
O
3u0p 1 P15813 98.91 0.0 X-RAY
 2012-04-25 ARG A:49 A:48 156.0 0.693 E -80.6 124.4 145.0 0.644 0.049 B:P61769:0.049
 UND
HOH
 7.249
6.317
 O
NH2
 C3
O
ARG C:49 C:48 172.0 0.764 E -70.3 134.6 NA NA NA
ARG E:49 E:48 170.0 0.756 E -78.7 134.0 NA NA NA
3tzv 3 P15813 98.91 0.0 X-RAY
 2012-04-25 ARG C:47 C:48 153.0 0.68 E -105.4 123.6 145.0 0.644 0.036 D:P61769:0.036
 D12
 7.026
 O
 C7
4mng 2 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 ARG B:49 A:48 149.0 0.662 E -85.6 133.4 141.0 0.627 0.035 A:P01887:0.036
 CIS
 6.837
 O
 C34
ARG D:49 C:48 151.0 0.671 E -85.6 133.4 NA NA NA
4mq7 1 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 ARG A:49 A:48 153.0 0.68 E -84.2 136.4 147.0 0.653 0.027 B:P01887:0.027
 CIS
HOH
 6.398
2.973
 O
NH2
 C35
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15813-f1 1 P15813 100.0 0.0 ARG A:66 A:66 148.0 0.658 E -86.7 128.0