Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 158151437 | . | A | C | CCDS1173.1:NM_001766.3:c.254cAg>cCg_NP_001757.1:p.85Q>P | Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1zt4 | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2005-07-19 | GLN | A:67 | A:67 | 10.0 | 0.056 | H | -42.1 | -49.2 | 10.0 | 0.056 | 0.0 |
AGH |
7.469 |
NE2 |
CAQ |
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GLN | C:67 | C:67 | 16.0 | 0.089 | H | -53.2 | -37.6 | NA | NA | NA | |||||||||||||
6v7y | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2020-09-16 | GLN | A:64 | A:64 | 17.0 | 0.094 | H | -57.8 | -45.4 | 17.0 | 0.094 | 0.0 |
AGH CL HOH |
7.388 8.831 3.171 |
N OE1 O |
CAS CL O |
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6v7z | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2020-09-16 | GLN | A:64 | A:67 | 9.0 | 0.05 | H | -54.6 | -35.9 | 9.0 | 0.05 | 0.0 |
AGH CL HOH |
6.934 6.574 4.172 |
OE1 O O |
CAQ CL O |
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GLN | C:64 | C:67 | 16.0 | 0.089 | H | -54.8 | -36.1 | NA | NA | NA | |||||||||||||
6v80 | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2020-09-16 | GLN | A:64 | A:67 | 17.0 | 0.094 | H | -58.8 | -30.2 | 17.0 | 0.094 | 0.0 |
AGH |
7.582 |
N |
CAS |
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GLN | F:64 | F:67 | 4.0 | NA | H | -38.9 | -53.5 | NA | NA | NA | |||||||||||||
4wwk | 3 | P15813 | 99.28 | 0.0 |
X-RAY |
2016-02-03 | GLN | C:68 | C:67 | 25.0 | 0.139 | H | -55.4 | -39.6 | 25.0 | 0.139 | 0.0 |
JLS |
7.293 |
OE1 |
CAT |
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3huj | 1 | P15813 | 99.28 | 0.0 |
X-RAY |
2009-07-28 | GLN | A:68 | A:67 | 10.0 | 0.056 | H | -58.9 | -47.5 | 10.0 | 0.056 | 0.0 |
AGH HOH |
7.093 2.783 |
NE2 O |
CAQ O |
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GLN | C:68 | C:67 | 5.0 | 0.028 | H | -69.2 | -52.8 | NA | NA | NA | |||||||||||||
3vwj | 1 | P15813 | 99.28 | 0.0 |
X-RAY |
2012-10-03 | GLN | A:68 | A:67 | 40.0 | 0.222 | H | -63.6 | -43.7 | 40.0 | 0.222 | 0.0 |
DB3 |
7.961 |
NE2 |
CAS |
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3vwk | 1 | P15813 | 99.28 | 0.0 |
X-RAY |
2012-10-03 | GLN | A:68 | A:67 | 11.0 | 0.061 | H | -58.1 | -33.9 | 11.0 | 0.061 | 0.0 |
4GH |
7.774 |
N |
CAU |
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4ww2 | 3 | P15813 | 99.28 | 0.0 |
X-RAY |
2016-02-03 | GLN | C:68 | C:67 | 16.0 | 0.089 | H | -50.5 | -42.1 | 16.0 | 0.089 | 0.0 |
JLS HOH |
7.090 2.757 |
N O |
CAT O |
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4en3 | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2012-10-31 | GLN | A:68 | C:67 | 2.0 | 0.011 | H | -57.9 | -46.2 | 2.0 | 0.011 | 0.0 |
AGH HOH |
6.825 2.427 |
OE1 OE1 |
CAS O |
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3sdx | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2011-10-05 | GLN | A:62 | A:67 | 18.0 | 0.1 | H | -49.2 | -32.8 | 18.0 | 0.1 | 0.0 |
GCY HOH |
8.968 7.339 |
O NE2 |
C44 O |
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GLN | F:62 | C:67 | 18.0 | 0.1 | H | -51.2 | -35.8 | NA | NA | NA | |||||||||||||
2po6 | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2007-07-03 | GLN | A:62 | A:67 | 5.0 | 0.028 | H | -55.1 | -37.2 | 5.0 | 0.028 | 0.0 |
AGH |
7.333 |
NE2 |
CAQ |
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GLN | E:62 | E:67 | 4.0 | 0.022 | H | -61.0 | -42.5 | NA | NA | NA | |||||||||||||
4lhu | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2013-10-02 | GLN | A:62 | A:67 | 7.0 | 0.039 | H | -52.0 | -38.5 | 7.0 | 0.039 | 0.0 |
JLS HOH |
7.270 3.685 |
NE2 NE2 |
CAS O |
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4wo4 | 1 | P15813 | 100.0 | 0.0 |
X-RAY |
2014-11-26 | GLN | A:62 | A:67 | 18.0 | 0.1 | H | -71.6 | -40.2 | 18.0 | 0.1 | 0.0 |
JLS HOH |
4.971 5.480 |
N NE2 |
CAV O |
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3u0p | 1 | P15813 | 98.91 | 0.0 |
X-RAY |
2012-04-25 | GLN | A:68 | A:67 | 9.0 | 0.05 | H | -55.8 | -49.3 | 9.0 | 0.05 | 0.0 |
HEX UND |
8.810 8.362 |
N OE1 |
C1 C3 |
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GLN | C:68 | C:67 | 9.0 | 0.05 | H | -46.8 | -62.6 | NA | NA | NA | |||||||||||||
GLN | E:68 | E:67 | 8.0 | 0.044 | H | -60.1 | -35.1 | NA | NA | NA | |||||||||||||
3tzv | 3 | P15813 | 98.91 | 0.0 |
X-RAY |
2012-04-25 | GLN | C:66 | C:67 | 8.0 | 0.044 | H | -57.9 | -46.3 | 8.0 | 0.044 | 0.0 |
LSC HEX D12 |
7.410 8.952 7.601 |
O O N |
O33 C1 C10 |
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4mng | 2 | P15813,Q7TMK5 | 92.06 | 0.0 |
X-RAY |
2013-12-18 | GLN | B:68 | A:67 | 18.0 | 0.1 | H | -58.2 | -40.3 | 18.0 | 0.1 | 0.0 |
CIS HOH |
7.416 6.296 |
NE2 O |
C36 O |
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GLN | D:68 | C:67 | 9.0 | 0.05 | H | -57.9 | -40.1 | NA | NA | NA | |||||||||||||
4mq7 | 1 | P15813,Q7TMK5 | 92.06 | 0.0 |
X-RAY |
2013-12-18 | GLN | A:68 | A:67 | 11.0 | 0.061 | H | -64.9 | -44.3 | 11.0 | 0.061 | 0.0 |
CIS HOH |
7.261 2.966 |
NE2 O |
C35 O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p15813-f1 | 1 | P15813 | 100.0 | 0.0 | GLN | A:85 | A:85 | 7.0 | 0.039 | H | -55.1 | -44.6 |