Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 158151442 . A C CCDS1173.1:NM_001766.3:c.259Ata>Cta_NP_001757.1:p.87I>L Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1zt4 1 P15813 100.0 0.0 X-RAY
 2005-07-19 ILE A:69 A:69 55.0 0.314 H -52.7 -38.5 55.0 0.314 0.0 AGH
 3.827
 CG2
 CAE
ILE C:69 C:69 97.0 0.554 H -76.6 -43.6 NA NA NA
6v7y 1 P15813 100.0 0.0 X-RAY
 2020-09-16 ILE A:66 A:66 57.0 0.326 H -54.2 -46.1 14.0 0.08 0.246 C:None:0.246
 AGH
HOH
 4.388
2.602
 CG2
O
 CAD
O
6v7z 1 P15813 100.0 0.0 X-RAY
 2020-09-16 ILE A:66 A:69 52.0 0.297 H -61.6 -45.3 52.0 0.297 0.0 AGH
CL
HOH
 4.160
7.166
3.044
 CG2
N
O
 CAE
CL
O
ILE C:66 C:69 55.0 0.314 H -64.9 -46.2 NA NA NA
6v80 1 P15813 100.0 0.0 X-RAY
 2020-09-16 ILE A:66 A:69 56.0 0.32 H -71.1 -55.0 35.0 0.2 0.12 E:None:0.12
 AGH
 4.152
 CG2
 CAC
ILE F:66 F:69 44.0 0.251 H -43.5 -33.8 NA NA NA
4wwk 3 P15813 99.28 0.0 X-RAY
 2016-02-03 ILE C:70 C:69 39.0 0.223 H -58.8 -53.0 25.0 0.143 0.08 B:None:0.08
 JLS
 3.955
 CG2
 CAF
3huj 1 P15813 99.28 0.0 X-RAY
 2009-07-28 ILE A:70 A:69 32.0 0.183 H -53.0 -56.2 32.0 0.183 0.0 AGH
HOH
 4.204
3.052
 CG2
O
 CAE
O
ILE C:70 C:69 36.0 0.206 H -58.7 -43.8 NA NA NA
3vwj 1 P15813 99.28 0.0 X-RAY
 2012-10-03 ILE A:70 A:69 40.0 0.229 H -56.0 -49.3 40.0 0.229 0.0 DB3
 4.717
 O
 OAA
3vwk 1 P15813 99.28 0.0 X-RAY
 2012-10-03 ILE A:70 A:69 45.0 0.257 H -71.4 -46.6 45.0 0.257 0.0 4GH
 4.282
 CG2
 CAE
4ww2 3 P15813 99.28 0.0 X-RAY
 2016-02-03 ILE C:70 C:69 35.0 0.2 H -61.8 -45.5 14.0 0.08 0.12 A:None:0.12
 JLS
HOH
 4.253
3.669
 CG2
CA
 CAE
O
4en3 1 P15813 100.0 0.0 X-RAY
 2012-10-31 ILE A:70 C:69 46.0 0.263 H -62.7 -34.7 46.0 0.263 0.0 AGH
HOH
 4.198
2.713
 CG2
O
 CAE
O
3sdx 1 P15813 100.0 0.0 X-RAY
 2011-10-05 ILE A:64 A:69 45.0 0.257 H -59.7 -46.3 45.0 0.257 0.0 GCY
HOH
 4.508
7.770
 CG2
CG2
 C39
O
ILE F:64 C:69 46.0 0.263 H -57.4 -44.1 NA NA NA
2po6 1 P15813 100.0 0.0 X-RAY
 2007-07-03 ILE A:64 A:69 39.0 0.223 H -57.2 -39.3 39.0 0.223 0.0 AGH
 4.222
 CG2
 CAE
ILE E:64 E:69 42.0 0.24 H -49.3 -45.7 NA NA NA
4lhu 1 P15813 100.0 0.0 X-RAY
 2013-10-02 ILE A:64 A:69 38.0 0.217 H -61.1 -40.3 19.0 0.109 0.108 C:None:0.109
 JLS
HOH
 3.810
6.158
 CG2
N
 CAE
O
4wo4 1 P15813 100.0 0.0 X-RAY
 2014-11-26 ILE A:64 A:69 43.0 0.246 H -49.1 -47.8 25.0 0.143 0.103 C:None:0.103
 JLS
HOH
 4.218
2.849
 CG2
O
 CAD
O
3u0p 1 P15813 98.91 0.0 X-RAY
 2012-04-25 ILE A:70 A:69 102.0 0.583 H -62.9 -31.1 102.0 0.583 0.0 LSC
HEX
UND
HOH
 6.496
8.739
8.954
4.516
 O
CG2
O
CG2
 C20
C1
C11
O
ILE C:70 C:69 69.0 0.394 H -57.1 -44.4 NA NA NA
ILE E:70 E:69 54.0 0.309 H -42.4 -45.4 NA NA NA
3tzv 3 P15813 98.91 0.0 X-RAY
 2012-04-25 ILE C:68 C:69 56.0 0.32 H -47.8 -51.5 56.0 0.32 0.0 LSC
HEX
D12
HOH
 3.886
4.366
8.507
8.961
 CA
CG2
CG2
O
 O33
C1
C12
H1
4mng 2 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 ILE B:70 A:69 34.0 0.194 H -57.0 -49.7 16.0 0.091 0.103 E:Q6PJ56:0.103
 CIS
HOH
 4.271
6.604
 O
N
 O2
O
ILE D:70 C:69 32.0 0.183 H -57.4 -49.4 NA NA NA
4mq7 1 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 ILE A:70 A:69 41.0 0.234 H -59.5 -46.4 41.0 0.234 0.0 CIS
HOH
 4.222
2.893
 CG2
O
 C20
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15813-f1 1 P15813 100.0 0.0 ILE A:87 A:87 28.0 0.16 H -57.9 -47.6