Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 158152752 . C A CCDS1173.1:NM_001766.3:c.692cCa>cAa_NP_001757.1:p.231P>Q Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1zt4 1 P15813 100.0 0.0 X-RAY
 2005-07-19 PRO A:213 A:213 16.0 0.11 S -51.3 110.1 16.0 0.11 0.0
PRO C:213 C:213 9.0 0.062 S -47.5 108.0 NA NA NA
6v7y 1 P15813 100.0 0.0 X-RAY
 2020-09-16 PRO A:210 A:210 30.0 0.207 S -82.5 -165.1 30.0 0.207 0.0 HOH
 4.167
 CB
 O
6v7z 1 P15813 100.0 0.0 X-RAY
 2020-09-16 PRO A:210 A:213 24.0 0.166 S -78.4 -173.1 24.0 0.166 0.0 PEG
 7.114
 CA
 C4
PRO C:210 C:213 22.0 0.152 S -76.6 -174.7 NA NA NA
6v80 1 P15813 100.0 0.0 X-RAY
 2020-09-16 PRO A:210 A:213 19.0 0.131 S -60.4 111.0 19.0 0.131 0.0
PRO F:210 F:213 28.0 0.193 S -97.0 -174.4 NA NA NA
4wwk 3 P15813 99.28 0.0 X-RAY
 2016-02-03 PRO C:214 C:213 21.0 0.145 S -80.2 -176.2 21.0 0.145 0.0
3huj 1 P15813 99.28 0.0 X-RAY
 2009-07-28 PRO A:214 A:213 24.0 0.166 S -86.9 -171.7 24.0 0.166 0.0 HOH
 6.175
 CA
 O
PRO C:214 C:213 15.0 0.103 S -81.2 -176.7 NA NA NA
3vwj 1 P15813 99.28 0.0 X-RAY
 2012-10-03 PRO A:214 A:213 30.0 0.207 S -83.1 -173.7 30.0 0.207 0.0
3vwk 1 P15813 99.28 0.0 X-RAY
 2012-10-03 PRO A:214 A:213 24.0 0.166 S -70.0 -175.8 24.0 0.166 0.0
4ww2 3 P15813 99.28 0.0 X-RAY
 2016-02-03 PRO C:214 C:213 5.0 0.034 S -70.1 -177.6 5.0 0.034 0.0 HOH
 8.559
 CD
 O
4en3 1 P15813 100.0 0.0 X-RAY
 2012-10-31 PRO A:214 C:213 24.0 0.166 S -70.1 -165.0 24.0 0.166 0.0 HOH
 6.452
 CA
 O
3sdx 1 P15813 100.0 0.0 X-RAY
 2011-10-05 PRO A:208 A:213 4.0 0.028 S -69.3 179.3 4.0 0.028 0.0 HOH
 8.611
 N
 O
PRO F:208 C:213 22.0 0.152 S -71.4 179.6 NA NA NA
2po6 1 P15813 100.0 0.0 X-RAY
 2007-07-03 PRO A:208 A:213 16.0 0.11 S -63.9 108.2 16.0 0.11 0.0
PRO E:208 E:213 15.0 0.103 S -70.2 101.1 NA NA NA
4lhu 1 P15813 100.0 0.0 X-RAY
 2013-10-02 PRO A:208 A:213 2.0 0.014 S -68.7 108.6 2.0 0.014 0.0
4wo4 1 P15813 100.0 0.0 X-RAY
 2014-11-26 PRO A:208 A:213 25.0 0.172 S -71.5 177.3 25.0 0.172 0.0 HOH
 6.625
 CA
 O
3u0p 1 P15813 98.91 0.0 X-RAY
 2012-04-25 PRO A:214 A:213 26.0 0.179 S -75.1 -157.1 26.0 0.179 0.0 GOL
HOH
 7.107
3.630
 N
CG
 O1
O
PRO C:214 C:213 23.0 0.159 S -72.8 -164.3 NA NA NA
PRO E:214 E:213 32.0 0.221 S -63.5 -176.8 NA NA NA
3tzv 3 P15813 98.91 0.0 X-RAY
 2012-04-25 PRO C:212 C:214 25.0 0.172 S -70.4 -173.4 25.0 0.172 0.0
4mng 2 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 PRO B:214 A:213 37.0 0.255 S -69.0 177.9 37.0 0.255 0.0
PRO D:214 C:213 39.0 0.269 S -69.0 178.3 NA NA NA
4mq7 1 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 PRO A:214 A:213 38.0 0.262 S -78.0 -178.0 38.0 0.262 0.0 HOH
 3.921
 CB
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15813-f1 1 P15813 100.0 0.0 PRO A:231 A:231 7.0 0.048 S -78.9 178.4