Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 158152859 . C A CCDS1173.1:NM_001766.3:c.799Ctg>Atg_NP_001757.1:p.267L>M Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1zt4 1 P15813 100.0 0.0 X-RAY
 2005-07-19 LEU A:249 A:249 13.0 0.076 E -142.9 145.5 13.0 0.076 0.0
LEU C:249 C:249 10.0 0.059 E -149.6 124.9 NA NA NA
6v7y 1 P15813 100.0 0.0 X-RAY
 2020-09-16 LEU A:246 A:246 14.0 0.082 E -128.0 120.3 14.0 0.082 0.0 HOH
 7.580
 O
 O
6v7z 1 P15813 100.0 0.0 X-RAY
 2020-09-16 LEU A:246 A:249 5.0 0.029 E -144.3 128.0 5.0 0.029 0.0
LEU C:246 C:249 12.0 0.071 E -147.7 126.7 NA NA NA
6v80 1 P15813 100.0 0.0 X-RAY
 2020-09-16 LEU A:246 A:249 4.0 0.024 E -162.5 133.6 4.0 0.024 0.0
LEU F:246 F:249 7.0 0.041 E -163.0 138.6 NA NA NA
4wwk 3 P15813 99.28 0.0 X-RAY
 2016-02-03 LEU C:250 C:249 4.0 0.024 E -160.5 117.9 4.0 0.024 0.0
3huj 1 P15813 99.28 0.0 X-RAY
 2009-07-28 LEU A:250 A:249 15.0 0.088 E -148.1 122.1 15.0 0.088 0.0 HOH
 7.576
 C
 O
LEU C:250 C:249 4.0 0.024 E -143.3 125.6 NA NA NA
3vwj 1 P15813 99.28 0.0 X-RAY
 2012-10-03 LEU A:250 A:249 31.0 0.182 E -151.3 131.9 31.0 0.182 0.0
3vwk 1 P15813 99.28 0.0 X-RAY
 2012-10-03 LEU A:250 A:249 49.0 0.288 E -154.0 140.3 49.0 0.288 0.0
4ww2 3 P15813 99.28 0.0 X-RAY
 2016-02-03 LEU C:250 C:249 11.0 0.065 E -150.2 123.5 11.0 0.065 0.0 HOH
 3.576
 CA
 O
4en3 1 P15813 100.0 0.0 X-RAY
 2012-10-31 LEU A:250 C:249 16.0 0.094 E -126.9 128.6 16.0 0.094 0.0 HOH
 3.615
 O
 O
3sdx 1 P15813 100.0 0.0 X-RAY
 2011-10-05 LEU A:244 A:249 12.0 0.071 E -153.8 119.3 12.0 0.071 0.0
LEU F:244 C:249 14.0 0.082 E -154.3 120.0 NA NA NA
2po6 1 P15813 100.0 0.0 X-RAY
 2007-07-03 LEU A:244 A:249 6.0 0.035 E -134.2 124.6 6.0 0.035 0.0
LEU E:244 E:249 12.0 0.071 E -141.3 132.5 NA NA NA
4lhu 1 P15813 100.0 0.0 X-RAY
 2013-10-02 LEU A:244 A:249 13.0 0.076 E -152.6 116.7 13.0 0.076 0.0
4wo4 1 P15813 100.0 0.0 X-RAY
 2014-11-26 LEU A:244 A:249 4.0 0.024 E -154.6 114.6 4.0 0.024 0.0 HOH
 9.598
 CD2
 O
3u0p 1 P15813 98.91 0.0 X-RAY
 2012-04-25 LEU A:250 A:249 14.0 0.082 E -142.6 125.9 14.0 0.082 0.0 HOH
 3.543
 CD2
 O
LEU C:250 C:249 9.0 0.053 E -146.9 122.1 NA NA NA
LEU E:250 NA:NA DO NA DO DO DO NA NA NA
3tzv 3 P15813 98.91 0.0 X-RAY
 2012-04-25 LEU C:248 C:250 24.0 0.141 E -153.9 147.9 24.0 0.141 0.0
4mng 2 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 LEU B:250 A:249 8.0 0.047 E -140.3 131.7 8.0 0.047 0.0
LEU D:250 C:249 7.0 0.041 E -140.3 131.8 NA NA NA
4mq7 1 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 LEU A:250 A:249 11.0 0.065 E -156.4 117.3 11.0 0.065 0.0 HOH
 3.300
 CD1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15813-f1 1 P15813 100.0 0.0 LEU A:267 A:267 7.0 0.041 E -141.5 124.5