Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 165389122 . C A CCDS1248.1:NM_006917.4:c.427Gga>Tga_NP_008848.1:p.143G>* Homo sapiens retinoid X receptor gamma (RXRG), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4nqa 1 P19793 83.01 0.0 X-RAY
 2014-02-26 GLY A:42 A:139 49.0 0.653 72.8 31.5 49.0 0.653 0.0 ZN
 5.059
 N
 ZN
GLY G:42 H:139 44.0 0.587 76.7 13.7 NA NA NA
5uan 1 P19793 83.01 0.0 X-RAY
 2017-10-18 GLY A:42 A:139 37.0 0.493 74.5 10.2 37.0 0.493 0.0 DA
ZN
 9.691
4.808
 C
N
 OP2
ZN
1ynw 4 P19793 83.84 5e-61 X-RAY
 2005-02-15 GLY D:10 B:239 35.0 0.467 B 95.7 -46.3 35.0 0.467 0.0 DA
ZN
 9.950
4.180
 C
N
 OP2
ZN
1dsz 4 P19793 94.05 6e-58 X-RAY
 2000-07-10 GLY D:12 B:1239 43.0 0.573 92.2 -5.6 43.0 0.573 0.0 ZN
HOH
 4.790
2.789
 N
O
 ZN
O
1by4 3 P19793 93.9 2e-56 X-RAY
 2000-01-12 GLY E:12 A:1139 47.0 0.627 75.3 1.8 47.0 0.627 0.0 ZN
HOH
 5.040
9.108
 N
C
 ZN
O
GLY F:12 B:1239 46.0 0.613 S 90.0 -21.7 46.0 0.613 0.0 ZN
HOH
 4.937
3.658
 N
N
 ZN
O
GLY G:12 C:2139 41.0 0.547 85.8 20.0 NA NA NA
GLY H:12 D:2239 45.0 0.6 82.0 -0.6 NA NA NA
4cn2 3 P19793 93.9 2e-56 X-RAY
 2015-02-18 GLY C:14 C:139 48.0 0.64 87.5 -2.3 48.0 0.64 0.0 ZN
MG
MG
HOH
 4.811
8.439
8.336
2.734
 N
C
C
O
 ZN
MG
MG
O
GLY D:14 D:139 48.0 0.64 76.4 4.3 48.0 0.64 0.0 ZN
HOH
 5.022
4.174
 N
C
 ZN
O
4cn3 1 P19793 93.9 2e-56 X-RAY
 2015-02-18 GLY A:14 A:139 38.0 0.507 77.7 7.8 NA NA NA
GLY B:14 B:139 46.0 0.613 S 81.9 4.4 46.0 0.613 0.0 ZN
HOH
 4.971
3.407
 N
O
 ZN
O
GLY C:14 C:139 44.0 0.587 S 77.6 -2.4 44.0 0.587 0.0 ZN
HOH
 5.091
4.612
 N
N
 ZN
O
4cn5 1 P19793 93.9 2e-56 X-RAY
 2015-02-18 GLY A:14 A:139 42.0 0.56 83.1 -2.7 42.0 0.56 0.0 ZN
CL
HOH
 4.697
7.474
2.886
 N
C
O
 ZN
CL
O
GLY B:14 B:139 42.0 0.56 93.4 -5.2 42.0 0.56 0.0 ZN
HOH
 4.815
2.765
 N
O
 ZN
O
4cn7 1 P19793 93.9 2e-56 X-RAY
 2015-02-18 GLY A:14 A:139 47.0 0.627 92.0 -4.6 NA NA NA
GLY B:14 B:139 39.0 0.52 92.1 4.9 NA NA NA
GLY E:14 E:139 43.0 0.573 87.6 7.5 43.0 0.573 0.0 ZN
HOH
 4.698
8.316
 N
C
 ZN
O
GLY F:14 F:139 49.0 0.653 78.6 7.9 49.0 0.653 0.0 ZN
HOH
 5.036
4.147
 N
CA
 ZN
O
6fbq 1 P19793 93.9 2e-56 X-RAY
 2018-12-05 GLY A:14 A:139 42.0 0.56 85.3 -1.9 42.0 0.56 0.0 ZN
MPO
HOH
 4.507
8.533
2.731
 H
H
HA3
 ZN
O2
O
GLY B:14 B:139 41.0 0.547 S 87.9 -9.0 41.0 0.547 0.0 ZN
HOH
 4.504
2.673
 H
O
 ZN
O
6fbr 1 P19793 93.9 2e-56 X-RAY
 2018-12-05 GLY A:14 A:139 44.0 0.587 84.9 2.3 44.0 0.587 0.0 ZN
HOH
 4.912
3.831
 N
N
 ZN
O
GLY B:14 B:139 46.0 0.613 80.8 2.7 46.0 0.613 0.0 ZN
HOH
 4.893
4.142
 N
N
 ZN
O
6xwg 3 P19793 93.9 2e-56 X-RAY
 2020-09-09 GLY C:14 C:139 42.0 0.56 91.5 -8.1 42.0 0.56 0.0 ZN
HOH
 4.883
8.423
 N
O
 ZN
O
6xwh 3 P19793 93.9 2e-56 X-RAY
 2020-09-09 GLY C:14 C:139 35.0 0.467 79.7 7.4 35.0 0.467 0.0 ZN
HOH
 4.927
7.906
 N
CA
 ZN
O
GLY D:14 D:139 40.0 0.533 95.6 -13.6 40.0 0.533 0.0 ZN
HOH
 4.805
3.964
 N
CA
 ZN
O
4cn3 2 P19793 92.68 1e-55 X-RAY
 2015-02-18 GLY D:14 D:139 41.0 0.547 80.5 19.6 NA NA NA
1rxr 1 P19793 92.68 3e-55 NMR
 1998-11-11 GLY A:10 A:139 31.0 0.413 75.6 8.2 31.0 0.413 0.0 ZN
 4.974
 H
 ZN
1r0n 3 P19793 93.51 1e-52 X-RAY
 2003-10-21 GLY C:10 A:105 38.0 0.507 S 86.8 12.9 38.0 0.507 0.0 ZN
HOH
 4.940
8.732
 N
C
 ZN
O
2han 3 P20153 80.46 3e-50 X-RAY
 2007-05-22 GLY C:17 A:11 38.0 0.507 83.9 1.0 38.0 0.507 0.0 ZN
HOH
 4.892
3.738
 N
CA
 ZN
O
1r0o 3 P20153 82.14 9e-50 X-RAY
 2003-10-21 GLY C:15 A:11 38.0 0.507 87.5 4.3 38.0 0.507 0.0 ZN
HOH
 5.064
3.716
 N
CA
 ZN
O
4umm 1 ? 83.33 2e-48 EM
 2014-06-25 GLY A:8 A:117 38.0 0.507 92.2 -7.0 38.0 0.507 0.0
2nll 3 P19793 95.45 1e-45 X-RAY
 1997-03-12 GLY C:5 A:139 56.0 0.747 S -108.2 -16.8 56.0 0.747 0.0 DG
ZN
HOH
 9.768
5.052
5.121
 N
N
N
 OP1
ZN
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p48443-f1 1 P48443 100.0 0.0 GLY A:143 A:143 54.0 0.72 S 72.2 -0.6
af-p28702-f1 1 P28702 80.18 0.0 GLY A:209 A:209 43.0 0.573 S 73.5 -0.5