Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 192993075 | . | A | C | CCDS1378.1:NM_015984.3:c.631Tac>Gac_NP_057068.1:p.211Y>D | Homo sapiens ubiquitin C-terminal hydrolase L5 (UCHL5), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
4uel | 1 | Q9Y5K5 | 99.7 | 0.0 |
X-RAY |
2015-03-04 | TYR | A:214 | A:211 | 15.0 | 0.065 | S | -109.2 | 169.0 | 15.0 | 0.065 | 0.0 |
HOH |
2.706 |
OH |
O |
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4uem | 1 | Q9Y5K5 | 99.7 | 0.0 |
X-RAY |
2015-03-04 | TYR | A:214 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
4uf5 | 1 | Q9Y5K5 | 99.7 | 0.0 |
X-RAY |
2015-03-04 | TYR | A:214 | A:211 | 5.0 | 0.022 | H | -61.4 | -44.8 | 5.0 | 0.022 | 0.0 | ||||||
4uf6 | 1 | Q9Y5K5 | 99.7 | 0.0 |
X-RAY |
2015-03-04 | TYR | A:214 | A:211 | 9.0 | 0.039 | S | -94.8 | 159.2 | 9.0 | 0.039 | 0.0 | ||||||
TYR | D:214 | D:211 | 14.0 | 0.061 | S | -95.7 | 159.8 | NA | NA | NA | |||||||||||||
TYR | G:214 | G:211 | 13.0 | 0.057 | S | -95.7 | 159.4 | NA | NA | NA | |||||||||||||
TYR | J:214 | J:211 | 12.0 | 0.052 | S | -95.8 | 159.9 | NA | NA | NA | |||||||||||||
3ihr | 1 | Q9Y5K5 | 99.7 | 0.0 |
X-RAY |
2009-08-11 | TYR | A:211 | A:211 | 20.0 | 0.087 | H | -82.1 | -61.6 | 20.0 | 0.087 | 0.0 | ||||||
4wlq | 1 | Q9WUP7 | 96.66 | 0.0 |
X-RAY |
2015-03-04 | TYR | A:211 | A:211 | 1.0 | 0.004 | H | -86.1 | -22.0 | 1.0 | 0.004 | 0.0 | ||||||
4wlr | 1 | Q9WUP7 | 96.66 | 0.0 |
X-RAY |
2015-03-04 | TYR | A:211 | A:211 | 20.0 | 0.087 | S | -116.9 | 166.2 | 20.0 | 0.087 | 0.0 |
HOH |
3.799 |
CE2 |
O |
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4wlp | 1 | Q9Y5K5 | 99.69 | 0.0 |
X-RAY |
2015-03-04 | TYR | A:207 | A:211 | 5.0 | 0.022 | H | -55.2 | -50.9 | 5.0 | 0.022 | 0.0 | ||||||
3ris | 1 | Q9Y5K5 | 100.0 | 0.0 |
X-RAY |
2011-11-09 | TYR | A:216 | A:211 | 8.0 | 0.035 | H | -70.0 | -35.0 | 8.0 | 0.035 | 0.0 |
HOH |
3.969 |
O |
O |
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TYR | B:216 | B:211 | 5.0 | 0.022 | H | -68.3 | -38.2 | NA | NA | NA | |||||||||||||
TYR | C:216 | C:211 | 4.0 | 0.017 | H | -77.4 | -32.6 | NA | NA | NA | |||||||||||||
TYR | D:216 | D:211 | 6.0 | 0.026 | H | -77.2 | -36.6 | NA | NA | NA | |||||||||||||
3a7s | 1 | Q9Y5K5 | 99.56 | 8e-173 |
X-RAY |
2009-11-03 | TYR | A:211 | A:211 | 1.0 | 0.004 | H | -83.5 | -34.8 | 1.0 | 0.004 | 0.0 |
HOH |
7.350 |
OH |
O |
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3rii | 1 | Q9Y5K5 | 99.56 | 1e-172 |
X-RAY |
2011-11-09 | TYR | A:216 | A:211 | 8.0 | 0.035 | H | -68.2 | -40.6 | 8.0 | 0.035 | 0.0 |
EDO HOH |
3.152 3.872 |
OH O |
C1 O |
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TYR | B:216 | B:211 | 3.0 | 0.013 | H | -78.2 | -40.7 | NA | NA | NA | |||||||||||||
3tb3 | 1 | Q9Y5K5 | 99.56 | 5e-172 |
X-RAY |
2012-02-22 | TYR | A:213 | A:211 | 0.0 | 0.0 | H | -77.1 | -40.0 | 0.0 | 0.0 | 0.0 |
HOH |
6.123 |
O |
O |
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TYR | B:213 | B:211 | 0.0 | 0.0 | H | -76.1 | -39.9 | NA | NA | NA |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q9y5k5-f1 | 1 | Q9Y5K5 | 100.0 | 0.0 | TYR | A:211 | A:211 | 19.0 | 0.083 | S | -83.6 | 150.3 |