Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 192998537 . C A CCDS1378.1:NM_015984.3:c.415Gta>Tta_NP_057068.1:p.139V>L Homo sapiens ubiquitin C-terminal hydrolase L5 (UCHL5), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4uel 1 Q9Y5K5 99.7 0.0 X-RAY
 2015-03-04 VAL A:142 A:139 11.0 0.071 H -64.6 -48.5 11.0 0.071 0.0 HOH
 4.891
 N
 O
4uem 1 Q9Y5K5 99.7 0.0 X-RAY
 2015-03-04 VAL A:142 A:139 26.0 0.168 H -67.6 -45.8 26.0 0.168 0.0
4uf5 1 Q9Y5K5 99.7 0.0 X-RAY
 2015-03-04 VAL A:142 A:139 24.0 0.155 H -66.6 -47.0 24.0 0.155 0.0
4uf6 1 Q9Y5K5 99.7 0.0 X-RAY
 2015-03-04 VAL A:142 A:139 9.0 0.058 H -66.1 -44.3 9.0 0.058 0.0
VAL D:142 D:139 14.0 0.09 H -66.1 -44.4 NA NA NA
VAL G:142 G:139 15.0 0.097 H -65.5 -45.0 NA NA NA
VAL J:142 J:139 13.0 0.084 H -66.4 -44.8 NA NA NA
3ihr 1 Q9Y5K5 99.7 0.0 X-RAY
 2009-08-11 VAL A:139 A:139 15.0 0.097 H -54.5 -56.5 15.0 0.097 0.0 HOH
 7.289
 CG2
 O
4wlq 1 Q9WUP7 96.66 0.0 X-RAY
 2015-03-04 VAL A:139 A:139 26.0 0.168 H -59.3 -46.9 26.0 0.168 0.0
4wlr 1 Q9WUP7 96.66 0.0 X-RAY
 2015-03-04 VAL A:139 A:139 24.0 0.155 H -67.3 -49.4 24.0 0.155 0.0 HOH
 3.703
 CG2
 O
4wlp 1 Q9Y5K5 99.69 0.0 X-RAY
 2015-03-04 VAL A:135 A:139 23.0 0.148 H -59.7 -48.1 23.0 0.148 0.0
3ris 1 Q9Y5K5 100.0 0.0 X-RAY
 2011-11-09 VAL A:144 A:139 26.0 0.168 H -60.4 -45.0 26.0 0.168 0.0 SO4
HOH
 9.285
7.200
 N
N
 O2
O
VAL B:144 B:139 26.0 0.168 H -64.4 -44.4 NA NA NA
VAL C:144 C:139 27.0 0.174 H -61.7 -44.8 NA NA NA
VAL D:144 D:139 27.0 0.174 H -54.2 -44.5 NA NA NA
3a7s 1 Q9Y5K5 99.56 8e-173 X-RAY
 2009-11-03 VAL A:139 A:139 21.0 0.135 H -65.8 -40.2 21.0 0.135 0.0 HOH
 8.241
 CG2
 O
3rii 1 Q9Y5K5 99.56 1e-172 X-RAY
 2011-11-09 VAL A:144 A:139 21.0 0.135 H -63.8 -50.0 21.0 0.135 0.0 HOH
 3.741
 CG2
 O
VAL B:144 B:139 24.0 0.155 H -63.6 -46.8 NA NA NA
3tb3 1 Q9Y5K5 99.56 5e-172 X-RAY
 2012-02-22 VAL A:141 A:139 28.0 0.181 H -64.1 -56.0 28.0 0.181 0.0 HOH
 8.662
 CG2
 O
VAL B:141 B:139 30.0 0.194 H -65.6 -54.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9y5k5-f1 1 Q9Y5K5 100.0 0.0 VAL A:139 A:139 24.0 0.155 H -60.6 -49.1