Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 193018889 . A C CCDS1378.1:NM_015984.3:c.233tTt>tGt_NP_057068.1:p.78F>C Homo sapiens ubiquitin C-terminal hydrolase L5 (UCHL5), transcript variant 1, mRNA.
pdb_id: 
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label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4uel 1 Q9Y5K5 99.7 0.0 X-RAY
 2015-03-04 PHE A:81 A:78 6.0 0.029 -71.1 105.7 6.0 0.029 0.0 HOH
 3.345
 O
 O
4uem 1 Q9Y5K5 99.7 0.0 X-RAY
 2015-03-04 PHE A:81 A:78 5.0 0.024 -85.7 119.0 5.0 0.024 0.0
4uf5 1 Q9Y5K5 99.7 0.0 X-RAY
 2015-03-04 PHE A:81 A:78 15.0 0.071 -84.6 135.4 15.0 0.071 0.0
4uf6 1 Q9Y5K5 99.7 0.0 X-RAY
 2015-03-04 PHE A:81 A:78 2.0 0.01 -75.7 108.9 2.0 0.01 0.0
PHE D:81 D:78 1.0 0.005 -76.6 108.6 NA NA NA
PHE G:81 G:78 2.0 0.01 -76.1 109.2 NA NA NA
PHE J:81 J:78 2.0 0.01 -75.8 108.0 NA NA NA
3ihr 1 Q9Y5K5 99.7 0.0 X-RAY
 2009-08-11 PHE A:78 A:78 10.0 0.048 -89.8 118.3 10.0 0.048 0.0 FMT
NA
HOH
 4.416
6.296
4.806
 CE2
N
C
 O1
NA
O
4wlq 1 Q9WUP7 96.66 0.0 X-RAY
 2015-03-04 PHE A:78 A:78 9.0 0.043 -86.5 113.7 9.0 0.043 0.0
4wlr 1 Q9WUP7 96.66 0.0 X-RAY
 2015-03-04 PHE A:78 A:78 8.0 0.038 -73.3 115.8 8.0 0.038 0.0 HOH
 3.814
 CD2
 O
4wlp 1 Q9Y5K5 99.69 0.0 X-RAY
 2015-03-04 PHE A:74 A:78 5.0 0.024 -98.2 114.7 5.0 0.024 0.0
3ris 1 Q9Y5K5 100.0 0.0 X-RAY
 2011-11-09 PHE A:83 A:78 12.0 0.057 -75.1 115.7 12.0 0.057 0.0 HOH
 3.320
 CD1
 O
PHE B:83 B:78 10.0 0.048 -80.4 118.9 NA NA NA
PHE C:83 C:78 7.0 0.033 -67.4 116.5 NA NA NA
PHE D:83 D:78 8.0 0.038 -72.3 115.6 NA NA NA
3a7s 1 Q9Y5K5 99.56 8e-173 X-RAY
 2009-11-03 PHE A:78 A:78 13.0 0.062 -77.1 112.1 13.0 0.062 0.0 HOH
 3.235
 CD2
 O
3rii 1 Q9Y5K5 99.56 1e-172 X-RAY
 2011-11-09 PHE A:83 A:78 11.0 0.052 -80.8 117.9 11.0 0.052 0.0 HOH
 3.446
 CD1
 O
PHE B:83 B:78 9.0 0.043 -83.8 117.5 NA NA NA
3tb3 1 Q9Y5K5 99.56 5e-172 X-RAY
 2012-02-22 PHE A:80 A:78 6.0 0.029 -69.2 120.3 6.0 0.029 0.0 HOH
 3.522
 CD2
 O
PHE B:80 B:78 6.0 0.029 -70.7 120.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9y5k5-f1 1 Q9Y5K5 100.0 0.0 PHE A:78 A:78 3.0 0.014 -73.4 114.1