Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 202571661 . C A CCDS1427.1:NM_001136504.1:c.478Gtt>Ttt_NP_001129976.1:p.160V>F Homo sapiens synaptotagmin 2 (SYT2), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5w5c 6 P21707 86.52 1e-174 X-RAY
 2017-08-23 ILE F:23 F:162 42.0 NA E -120.9 78.9 42.0 NA NA
2r83 1 P21579 86.17 5e-174 X-RAY
 2008-02-12 ILE A:25 A:162 0.0 0.0 E -106.2 98.4 0.0 0.0 0.0 CL
HOH
 5.490
7.275
 O
O
 CL
O
ILE B:25 B:162 0.0 0.0 E -106.2 98.0 0.0 0.0 0.0 CL
HOH
 5.594
7.380
 O
O
 CL
O
5ccg 5 P21707 86.79 6e-174 X-RAY
 2015-08-12 ILE E:22 E:162 1.0 0.006 E -100.0 106.4 1.0 0.006 0.0
ILE F:22 F:162 2.0 0.011 E -101.2 108.3 2.0 0.011 0.0 HOH
 8.382
 O
 O
ILE K:22 K:162 0.0 0.0 E -98.3 107.7 NA NA NA
5cch 5 P21707 86.79 6e-174 X-RAY
 2015-08-12 ILE E:22 E:162 0.0 0.0 E -98.2 104.3 0.0 0.0 0.0
ILE F:22 F:162 0.0 0.0 E -97.8 105.5 0.0 0.0 0.0
5cci 5 P21707 86.79 6e-174 X-RAY
 2015-08-12 ILE E:22 E:162 0.0 0.0 E -96.1 107.4 0.0 0.0 0.0
ILE F:22 F:162 0.0 0.0 E -97.1 108.6 0.0 0.0 0.0
6mti 2 P21707 86.79 6e-174 EM
 2019-04-24 ILE B:22 2:162 0.0 0.0 E -96.1 107.3 0.0 0.0 0.0
ILE C:22 3:162 0.0 0.0 E -96.1 107.4 0.0 0.0 0.0
ILE D:22 4:162 0.0 0.0 E -96.1 107.4 0.0 0.0 0.0
ILE E:22 5:162 0.0 0.0 E -96.1 107.3 0.0 0.0 0.0
5kj7 5 P21707 87.36 6e-174 X-RAY
 2016-10-19 ILE E:22 E:162 1.0 0.006 E -107.1 107.6 1.0 0.006 0.0
ILE F:22 F:162 3.0 0.017 E -123.7 107.8 NA NA NA
ILE K:22 K:162 0.0 0.0 E -105.4 108.7 NA NA NA
5kj8 5 P21707 87.36 6e-174 X-RAY
 2016-10-19 ILE E:22 E:162 0.0 0.0 E -110.6 104.0 0.0 0.0 0.0
ILE F:22 F:162 1.0 0.006 E -111.1 105.7 NA NA NA
ILE K:22 K:162 0.0 0.0 E -109.2 105.5 NA NA NA
2k8m 1 Q6AI31 85.94 9e-77 NMR
 2009-03-17 ILE A:23 A:23 11.0 0.063 E -92.6 141.9 11.0 0.063 0.0
ILE D:23 D:23 9.0 0.051 E -96.2 136.6 9.0 0.051 0.0
2ki6 1 P21579 85.94 9e-77 NMR
 2010-03-09 ILE A:23 A:23 8.0 0.046 E -83.6 150.4 8.0 0.046 0.0
ILE F:23 F:23 12.0 0.069 E -83.6 150.4 12.0 0.069 0.0
6mti 1 P21707 86.51 4e-76 EM
 2019-04-24 ILE A:22 1:162 0.0 0.0 E -96.1 107.4 0.0 0.0 0.0
ILE F:22 6:162 0.0 0.0 E -96.1 107.4 0.0 0.0 0.0
4wee 1 P21707 85.83 4e-76 X-RAY
 2014-10-01 ILE A:40 A:162 0.0 0.0 E -100.3 104.6 0.0 0.0 0.0 NA
HOH
 9.967
6.564
 HG23
O
 NA
O
5t0r 1 P46096 85.71 2e-75 X-RAY
 2017-06-14 ILE A:23 A:162 0.0 0.0 E -97.9 105.4 0.0 0.0 0.0 HOH
 3.339
 O
 O
5vfe 1 P46096 85.71 2e-75 X-RAY
 2018-04-11 ILE A:23 A:162 1.0 0.006 E -102.2 110.0 1.0 0.006 0.0 HOH
 6.267
 N
 O
ILE B:23 B:162 1.0 0.006 E -101.9 111.9 NA NA NA
1rsy 1 P21707 86.4 2e-75 X-RAY
 1995-05-08 ILE A:48 A:162 0.0 0.0 E -100.1 103.0 0.0 0.0 0.0 HOH
 6.473
 O
 O
3f00 1 P21579 85.71 3e-75 X-RAY
 2009-09-08 ILE A:40 A:162 0.0 0.0 E -100.9 104.6 0.0 0.0 0.0 HOH
 6.463
 O
 O
3f01 1 P21579 85.71 3e-75 X-RAY
 2009-10-06 ILE A:40 A:162 0.0 0.0 E -98.3 104.7 0.0 0.0 0.0 HOH
 6.567
 O
 O
3f04 1 P21579 85.71 3e-75 X-RAY
 2009-09-08 ILE A:40 A:162 0.0 0.0 E -100.4 103.2 0.0 0.0 0.0 HOH
 6.558
 O
 O
3f05 1 P21579 85.71 3e-75 X-RAY
 2009-10-06 ILE A:40 A:162 0.0 0.0 E -98.5 104.8 0.0 0.0 0.0 HOH
 6.566
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q8n9i0-f1 1 Q8N9I0 100.0 0.0 VAL A:160 A:160 0.0 0.0 E -97.5 107.0