Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 226550861 . C A CCDS1554.1:NM_001618.3:c.2787atG>atT_NP_001609.2:p.929M>I Homo sapiens poly(ADP-ribose) polymerase 1 (PARP1), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4opx 2 P09874 100.0 0.0 X-RAY
2014-07-02 MET B:412 C:929 18.0 0.097 E -93.3 144.1 18.0 0.097 0.0
MET D:412 F:929 18.0 0.097 E -93.2 144.1 NA NA NA
4oqa 2 P09874 100.0 0.0 X-RAY
2014-07-02 MET B:412 C:929 19.0 0.103 E -91.2 143.9 19.0 0.103 0.0
MET D:412 F:929 19.0 0.103 E -91.2 143.9 NA NA NA
4oqb 2 P09874 100.0 0.0 X-RAY
2014-07-02 MET B:412 C:929 18.0 0.097 E -92.7 143.1 18.0 0.097 0.0
MET D:412 F:929 18.0 0.097 E -92.7 143.2 NA NA NA
4dqy 3 P09874 99.8 0.0 X-RAY
2012-05-30 MET C:413 C:929 15.0 0.081 E -84.7 139.1 15.0 0.081 0.0
MET F:413 F:929 15.0 0.081 E -85.1 138.9 NA NA NA
4zzz 1 P09874 100.0 0.0 X-RAY
2015-08-12 MET A:277 A:929 28.0 0.151 E -93.2 136.8 28.0 0.151 0.0 SO4
HOH
3.269
2.812
CE
N
O1
O
MET B:277 B:929 26.0 0.141 E -85.4 137.6 26.0 0.141 0.0 SO4
HOH
3.426
3.376
CE
O
O3
O
5a00 1 P09874 100.0 0.0 X-RAY
2015-08-12 MET A:277 A:929 15.0 0.081 E -84.1 127.1 15.0 0.081 0.0 SO4
HOH
3.406
2.827
CE
N
O3
O
4xhu 1 P09874 99.44 0.0 X-RAY
2015-09-30 MET A:274 C:929 26.0 0.141 E -84.1 126.4 26.0 0.141 0.0 HOH
3.421
O
O
MET C:274 A:929 34.0 0.184 E -94.0 130.4 NA NA NA
6xvw 1 P09874 100.0 0.0 X-RAY
2020-06-03 MET A:269 A:929 33.0 0.178 E -101.1 127.7 33.0 0.178 0.0 EDO
HOH
9.098
2.636
N
N
O2
O
MET B:269 B:929 32.0 0.173 E -101.2 127.0 NA NA NA
7kk2 1 P09874 99.72 0.0 X-RAY
2021-01-06 MET A:270 A:929 18.0 0.097 E -84.3 134.0 18.0 0.097 0.0 HOH
2.686
O
O
MET B:270 B:929 23.0 0.124 E -84.4 130.9 NA NA NA
7kk3 1 P09874 99.72 0.0 X-RAY
2021-01-06 MET A:270 A:929 25.0 0.135 E -89.9 137.2 25.0 0.135 0.0 HOH
3.142
N
O
MET B:270 B:929 14.0 0.076 E -87.1 138.8 NA NA NA
MET C:270 C:929 20.0 0.108 E -89.4 130.0 NA NA NA
MET D:270 D:929 18.0 0.097 E -89.2 131.1 NA NA NA
7kk4 1 P09874 99.72 0.0 X-RAY
2021-01-06 MET A:270 A:929 28.0 0.151 E -84.4 117.6 28.0 0.151 0.0 HOH
3.331
O
O
MET B:270 B:929 29.0 0.157 E -86.5 127.8 NA NA NA
7kk5 1 P09874 99.72 0.0 X-RAY
2021-01-06 MET A:270 A:929 26.0 0.141 E -88.4 133.0 26.0 0.141 0.0 HOH
3.025
N
O
MET B:270 B:929 19.0 0.103 E -82.0 139.6 NA NA NA
MET C:270 C:929 18.0 0.097 E -84.2 135.8 NA NA NA
MET D:270 D:929 24.0 0.13 E -85.2 132.6 NA NA NA
7kk6 1 P09874 99.72 0.0 X-RAY
2021-01-06 MET A:270 A:929 17.0 0.092 E -76.4 135.8 17.0 0.092 0.0 HOH
3.185
O
O
MET B:270 B:929 26.0 0.141 E -97.3 124.8 NA NA NA
7aaa 1 P09874 99.43 0.0 X-RAY
2021-01-13 MET A:270 A:929 28.0 0.151 E -83.9 135.3 28.0 0.151 0.0 HOH
2.859
N
O
MET B:270 B:929 33.0 0.178 E -88.1 134.0 NA NA NA
7aab 1 P09874 99.43 0.0 X-RAY
2021-01-13 MET A:270 A:929 21.0 0.114 E -78.3 145.1 21.0 0.114 0.0 SO4
HOH
3.738
8.930
CE
CE
O4
O
MET B:270 B:929 22.0 0.119 E -80.9 143.0 NA NA NA
7aac 1 P09874 99.43 0.0 X-RAY
2021-01-13 MET A:270 A:929 25.0 0.135 E -85.5 134.6 25.0 0.135 0.0 HOH
2.805
O
O
MET B:270 B:929 24.0 0.13 E -84.7 134.2 NA NA NA
7aad 1 P09874 99.43 0.0 X-RAY
2021-01-13 MET A:270 A:929 20.0 0.108 E -87.2 132.9 20.0 0.108 0.0 HOH
3.625
O
O
MET B:270 B:929 19.0 0.103 E -87.3 132.9 NA NA NA
7onr 1 P09874 99.43 0.0 X-RAY
2021-09-15 MET A:270 A:929 20.0 0.108 E -82.8 136.1 20.0 0.108 0.0 HOH
2.711
O
O
MET B:270 B:929 20.0 0.108 E -82.5 136.0 NA NA NA
7ons 1 P09874 99.43 0.0 X-RAY
2021-09-15 MET A:270 A:929 21.0 0.114 E -84.0 138.1 21.0 0.114 0.0 SO4
HOH
3.422
2.684
CE
O
O2
O
MET B:270 B:929 20.0 0.108 E -84.6 138.1 NA NA NA
7ont 1 P09874 99.43 0.0 X-RAY
2021-09-15 MET A:270 A:929 20.0 0.108 E -83.5 136.8 20.0 0.108 0.0 HOH
2.913
N
O
MET B:270 B:929 25.0 0.135 E -82.9 135.8 NA NA NA
5ha9 1 P09874 100.0 0.0 X-RAY
2016-03-09 MET A:269 A:268 23.0 0.124 E -84.1 125.6 23.0 0.124 0.0
MET B:269 B:268 31.0 0.168 E -105.5 135.1 31.0 0.168 0.0 SO4
SO4
4.599
3.194
O
CE
O3
O1
4hhy 1 P09874 99.43 0.0 X-RAY
2013-03-27 MET A:273 A:268 26.0 0.141 E -82.8 123.3 NA NA NA
MET B:273 B:268 20.0 0.108 E -88.5 128.2 NA NA NA
MET C:273 C:268 22.0 0.119 E -81.6 139.9 22.0 0.119 0.0 HOH
4.387
CE
O
MET D:273 D:268 27.0 0.146 E -78.8 114.9 NA NA NA
4hhz 1 P09874 99.43 0.0 X-RAY
2013-03-27 MET A:273 A:268 15.0 0.081 E -85.1 126.8 NA NA NA
MET B:273 B:268 27.0 0.146 E -94.2 128.2 NA NA NA
MET C:273 C:268 22.0 0.119 E -86.2 127.1 22.0 0.119 0.0 HOH
4.515
CE
O
MET D:273 D:268 30.0 0.162 E -87.0 129.0 NA NA NA
5xsr 1 P09874 99.43 0.0 X-RAY
2018-04-25 MET A:273 A:268 21.0 0.114 E -92.7 127.6 21.0 0.114 0.0 HOH
3.280
O
O
5xsu 1 P09874 99.43 0.0 X-RAY
2018-04-25 MET A:273 A:268 21.0 0.114 E -85.2 128.1 21.0 0.114 0.0 SO4
HOH
3.576
2.912
CE
N
O2
O
MET B:273 B:268 28.0 0.151 E -88.4 127.9 NA NA NA
MET C:273 C:268 23.0 0.124 E -84.6 126.6 NA NA NA
MET D:273 D:268 29.0 0.157 E -87.0 126.2 NA NA NA
1uk0 1 P09874 100.0 0.0 X-RAY
2004-01-27 MET A:268 A:268 29.0 0.157 E -70.7 121.5 29.0 0.157 0.0 HOH
3.880
CE
O
MET B:268 B:268 21.0 0.114 E -94.2 133.7 NA NA NA
1uk1 1 P09874 100.0 0.0 X-RAY
2004-09-14 MET A:268 A:929 22.0 0.119 E -96.9 121.7 22.0 0.119 0.0 HOH
3.017
O
O
MET B:268 B:929 22.0 0.119 E -99.3 124.2 NA NA NA
1wok 1 P09874 100.0 0.0 X-RAY
2005-03-15 MET A:268 A:929 33.0 0.178 -76.7 131.4 24.0 0.13 0.048 D:P09874:0.049
MET B:268 B:929 33.0 0.178 E -81.9 144.3 32.0 0.173 0.005 C:P09874:0.005
MET C:268 C:929 21.0 0.114 -77.4 153.0 21.0 0.114 0.0
MET D:268 D:929 17.0 0.092 B -75.5 139.6 15.0 0.081 0.011 A:P09874:0.011
2rcw 1 P09874 100.0 0.0 X-RAY
2008-09-23 MET A:268 A:268 30.0 0.162 E -83.2 151.9 30.0 0.162 0.0 HOH
3.292
O
O
6vkk 1 P09874 99.72 0.0 X-RAY
2020-06-17 MET A:290 A:929 28.0 0.151 E -84.5 128.3 28.0 0.151 0.0 SO4
HOH
3.425
9.203
CE
CE
O1
O
MET B:290 D:929 27.0 0.146 E -84.7 128.4 NA NA NA
MET C:290 C:929 23.0 0.124 E -85.1 128.5 NA NA NA
MET D:290 B:929 23.0 0.124 E -84.8 128.5 NA NA NA
6vko 1 P09874 99.72 0.0 X-RAY
2020-06-17 MET A:290 A:929 26.0 0.141 E -78.8 124.1 26.0 0.141 0.0 SO4
3.021
CE
O3
MET B:290 B:929 26.0 0.141 E -78.6 123.9 NA NA NA
MET C:290 C:929 25.0 0.135 E -78.9 123.9 NA NA NA
MET D:290 D:929 28.0 0.151 E -78.9 123.0 NA NA NA
6vkq 1 P09874 99.72 0.0 X-RAY
2020-06-17 MET A:290 A:929 32.0 0.173 E -85.6 132.9 32.0 0.173 0.0 SO4
3.586
CE
O3
MET B:290 B:929 28.0 0.151 E -85.3 133.6 NA NA NA
MET C:290 C:929 30.0 0.162 E -85.8 133.2 NA NA NA
MET D:290 D:929 31.0 0.168 E -85.6 133.6 NA NA NA
4gv7 1 P09874 99.43 0.0 X-RAY
2013-06-19 MET A:269 A:929 26.0 0.141 E -91.5 134.7 26.0 0.141 0.0
MET B:269 B:929 18.0 0.097 E -91.5 146.6 NA NA NA
MET C:269 C:929 21.0 0.114 E -86.2 144.1 NA NA NA
MET D:269 D:929 26.0 0.141 E -97.5 142.9 NA NA NA
4r5w 1 P09874 99.43 0.0 X-RAY
2015-09-02 MET A:269 A:929 24.0 0.13 E -93.2 133.5 24.0 0.13 0.0
MET B:269 B:929 24.0 0.13 E -93.3 133.8 NA NA NA
4r6e 1 P09874 99.43 0.0 X-RAY
2015-09-09 MET A:269 A:929 20.0 0.108 E -84.0 135.2 20.0 0.108 0.0 HOH
3.061
O
O
MET B:269 B:929 20.0 0.108 E -85.3 135.9 NA NA NA
MET C:269 C:929 25.0 0.135 E -86.3 135.2 NA NA NA
MET D:269 D:929 23.0 0.124 E -85.9 135.6 NA NA NA
6ghk 1 P09874 99.43 0.0 X-RAY
2019-05-22 MET A:269 A:929 25.0 0.135 E -88.1 132.3 25.0 0.135 0.0 HOH
3.655
O
O
MET B:269 B:929 25.0 0.135 E -88.1 134.5 NA NA NA
4pjt 1 P09874 100.0 0.0 X-RAY
2014-09-24 MET A:288 A:929 23.0 0.124 E -88.0 133.8 23.0 0.124 0.0 SO4
HOH
3.611
2.956
CE
N
O2
O
MET B:288 B:929 18.0 0.097 E -87.8 133.0 NA NA NA
MET C:288 C:929 18.0 0.097 E -87.4 132.1 NA NA NA
MET D:288 D:929 22.0 0.119 E -87.7 131.9 NA NA NA
4rv6 1 P09874 99.71 0.0 X-RAY
2015-12-09 MET A:270 A:929 21.0 0.114 E -82.8 136.6 21.0 0.114 0.0
MET B:270 B:929 22.0 0.119 E -82.2 137.0 NA NA NA
MET C:270 C:929 21.0 0.114 E -82.6 136.0 NA NA NA
MET D:270 D:929 21.0 0.114 E -82.7 136.2 NA NA NA
4uxb 1 P09874 99.71 0.0 X-RAY
2015-09-02 MET A:270 A:929 28.0 0.151 E -91.3 135.2 28.0 0.151 0.0 HOH
4.087
CE
O
MET B:270 B:929 16.0 0.086 E -91.4 135.1 NA NA NA
4l6s 1 P09874 99.71 0.0 X-RAY
2013-08-07 MET A:271 A:929 26.0 0.141 E -87.1 138.5 26.0 0.141 0.0 HOH
2.767
N
O
MET B:271 B:929 33.0 0.178 E -87.2 120.0 NA NA NA
4und 1 P09874 99.71 0.0 X-RAY
2015-06-17 MET A:291 A:929 17.0 0.092 E -99.2 125.1 17.0 0.092 0.0 HOH
9.067
CA
O
MET B:291 B:929 13.0 0.07 E -98.4 125.2 NA NA NA
5kpn 1 P09874 99.71 0.0 X-RAY
2016-12-21 MET A:270 A:929 20.0 0.108 E -85.7 131.6 20.0 0.108 0.0
MET B:270 B:929 24.0 0.13 E -95.6 122.4 NA NA NA
5kpo 1 P09874 99.71 0.0 X-RAY
2016-12-21 MET A:270 A:929 23.0 0.124 E -85.1 131.6 23.0 0.124 0.0
MET B:270 B:929 23.0 0.124 E -91.4 128.0 NA NA NA
5wrq 1 P09874 99.71 0.0 X-RAY
2017-01-25 MET A:270 A:929 23.0 0.124 E -87.9 129.6 23.0 0.124 0.0
MET B:270 B:929 22.0 0.119 E -89.5 131.3 NA NA NA
5wry 1 P09874 99.71 0.0 X-RAY
2017-01-25 MET A:270 A:929 20.0 0.108 E -88.1 132.3 20.0 0.108 0.0 HOH
2.729
N
O
MET B:270 B:929 28.0 0.151 E -92.5 119.7 NA NA NA
5wrz 1 P09874 99.71 0.0 X-RAY
2017-01-25 MET A:270 A:929 21.0 0.114 E -83.9 135.4 21.0 0.114 0.0
MET B:270 B:929 28.0 0.151 E -97.1 125.7 NA NA NA
5ws0 1 P09874 99.71 0.0 X-RAY
2017-01-25 MET A:270 A:929 25.0 0.135 E -85.4 131.7 25.0 0.135 0.0
MET B:270 B:929 27.0 0.146 E -93.5 134.0 NA NA NA
5ws1 1 P09874 99.71 0.0 X-RAY
2017-01-25 MET A:270 A:929 21.0 0.114 E -87.8 137.9 21.0 0.114 0.0
MET B:270 B:929 30.0 0.162 E -92.5 133.1 NA NA NA
5wtc 1 P09874 99.71 0.0 X-RAY
2017-01-25 MET A:270 A:929 20.0 0.108 E -86.0 132.7 20.0 0.108 0.0
MET B:270 B:929 27.0 0.146 E -97.8 127.6 NA NA NA
2rd6 1 P09874 99.71 0.0 X-RAY
2008-09-23 MET A:268 A:268 23.0 0.124 E -91.1 130.6 23.0 0.124 0.0 HOH
3.325
N
O
3gjw 1 P09874 99.71 0.0 X-RAY
2010-03-09 MET A:268 A:268 19.0 0.103 E -93.5 146.2 19.0 0.103 0.0 HOH
3.017
N
O
3gn7 1 P09874 99.71 0.0 X-RAY
2010-03-16 MET A:268 A:268 20.0 0.108 E -95.6 125.8 20.0 0.108 0.0 HOH
3.034
O
O
3l3l 1 P09874 99.71 0.0 X-RAY
2010-12-22 MET A:268 A:268 18.0 0.097 E -89.3 135.4 18.0 0.097 0.0 HOH
2.964
O
O
3l3m 1 P09874 99.71 0.0 X-RAY
2010-06-23 MET A:268 A:268 21.0 0.114 E -93.0 130.2 21.0 0.114 0.0 HOH
3.000
O
O
5kpp 1 P09874 99.71 0.0 X-RAY
2016-11-30 MET A:268 A:929 22.0 0.119 E -84.6 130.3 22.0 0.119 0.0 HOH
3.285
O
O
MET B:268 B:929 18.0 0.097 E -89.1 126.8 NA NA NA
5kpq 1 P09874 99.71 0.0 X-RAY
2016-12-14 MET A:268 A:929 23.0 0.124 E -85.8 122.5 23.0 0.124 0.0 HOH
8.587
CE
O
MET B:268 B:929 19.0 0.103 E -103.2 129.4 NA NA NA
7cmw 1 P09874 99.71 0.0 X-RAY
2020-12-16 MET A:272 A:929 34.0 0.184 E -90.6 133.5 34.0 0.184 0.0 HOH
3.436
O
O
MET B:272 B:929 30.0 0.162 E -91.1 137.7 NA NA NA
5xst 1 P09874 99.43 0.0 X-RAY
2018-04-25 MET A:269 A:268 21.0 0.114 E -95.4 130.5 21.0 0.114 0.0 HOH
3.338
O
O
6i8m 1 P26446 86.7 0.0 X-RAY
2019-05-01 MET A:278 A:929 32.0 0.173 E -89.8 121.9 32.0 0.173 0.0 HOH
3.777
CE
O
6i8t 1 P26446 86.7 0.0 X-RAY
2019-05-01 MET A:278 A:929 30.0 0.162 E -100.6 119.0 30.0 0.162 0.0 HOH
2.888
N
O
1a26 1 P26446 86.67 0.0 X-RAY
1998-05-27 MET A:276 A:929 33.0 0.178 E -88.1 135.1 33.0 0.178 0.0 HOH
3.218
O
O
1pax 1 P26446 86.67 0.0 X-RAY
1997-05-15 MET A:276 A:929 32.0 0.173 E -85.9 139.8 32.0 0.173 0.0 HOH
2.937
N
O
2paw 1 P26446 86.67 0.0 X-RAY
1998-05-27 MET A:276 A:929 33.0 0.178 E -95.9 131.7 33.0 0.178 0.0 HOH
2.910
N
O
2pax 1 P26446 86.67 0.0 X-RAY
1998-05-27 MET A:276 A:929 32.0 0.173 E -87.6 136.9 32.0 0.173 0.0 HOH
2.920
N
O
3pax 1 P26446 86.67 0.0 X-RAY
1998-05-27 MET A:276 A:929 28.0 0.151 E -87.3 137.3 28.0 0.151 0.0 HOH
2.752
N
O
4pax 1 P26446 86.67 0.0 X-RAY
1998-05-27 MET A:276 A:929 31.0 0.168 E -83.6 139.1 31.0 0.168 0.0 HOH
2.710
N
O
1efy 1 P26446 86.86 0.0 X-RAY
2001-01-17 MET A:268 A:929 36.0 0.195 E -87.4 139.2 36.0 0.195 0.0 HOH
3.280
CE
O
6m3i 2 P09874 100.0 3e-162 X-RAY
2021-03-03 MET B:168 B:929 29.0 0.157 E -90.2 132.9 29.0 0.157 0.0 HOH
3.002
N
O
5ds3 1 P09874 100.0 5e-160 X-RAY
2016-07-27 MET A:188 A:929 24.0 0.13 E -86.2 150.1 24.0 0.13 0.0 SO4
HOH
3.610
9.894
CE
C
O3
O
6bhv 1 P09874 100.0 5e-160 X-RAY
2018-02-28 MET A:188 A:929 26.0 0.141 E -92.1 133.3 26.0 0.141 0.0 HOH
9.560
CE
O
MET B:188 B:929 20.0 0.108 E -92.1 134.2 NA NA NA
MET C:188 C:929 27.0 0.146 E -91.6 133.3 NA NA NA
MET D:188 D:929 27.0 0.146 E -92.5 133.2 NA NA NA
6nrf 1 P09874 100.0 5e-160 X-RAY
2019-08-14 MET A:188 A:929 25.0 0.135 E -89.6 131.8 25.0 0.135 0.0 HOH
2.948
N
O
6nrg 1 P09874 100.0 5e-160 X-RAY
2019-08-14 MET A:188 A:929 22.0 0.119 E -89.8 133.3 22.0 0.119 0.0 SO4
DMS
DMS
HOH
3.599
6.995
7.414
2.852
CE
CE
CE
N
O2
C1
O
O
6nrh 1 P09874 100.0 5e-160 X-RAY
2019-08-14 MET A:188 A:929 26.0 0.141 E -90.6 134.7 26.0 0.141 0.0 SO4
HOH
3.453
2.936
CE
N
O2
O
6nri 1 P09874 100.0 5e-160 X-RAY
2019-08-14 MET A:188 A:929 28.0 0.151 E -90.2 134.5 28.0 0.151 0.0 HOH
6.311
O
O
6nrj 1 P09874 100.0 5e-160 X-RAY
2019-08-14 MET A:188 A:929 23.0 0.124 E -90.2 134.3 23.0 0.124 0.0 SO4
HOH
3.646
2.979
CE
N
O2
O
6ntu 1 P09874 100.0 5e-160 X-RAY
2020-02-05 MET A:188 A:929 31.0 0.168 E -89.2 134.8 31.0 0.168 0.0 GLC
DMS
SO4
HOH
9.660
9.119
3.134
2.906
N
C
CE
N
O2
S
O4
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09874-f1 1 P09874 100.0 0.0 MET A:929 A:929 23.0 0.124 E -82.9 137.6