Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 226555193 . T A CCDS1554.1:NM_001618.3:c.2394aaA>aaT_NP_001609.2:p.798K>N Homo sapiens poly(ADP-ribose) polymerase 1 (PARP1), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4opx 2 P09874 100.0 0.0 X-RAY
2014-07-02 LYS B:281 C:798 108.0 0.54 T 62.3 45.4 108.0 0.54 0.0
LYS D:281 F:798 108.0 0.54 T 62.2 45.5 NA NA NA
4oqa 2 P09874 100.0 0.0 X-RAY
2014-07-02 LYS B:281 C:798 109.0 0.545 T 62.6 44.8 109.0 0.545 0.0
LYS D:281 F:798 108.0 0.54 T 62.7 44.7 NA NA NA
4oqb 2 P09874 100.0 0.0 X-RAY
2014-07-02 LYS B:281 C:798 108.0 0.54 T 62.6 46.0 108.0 0.54 0.0
LYS D:281 F:798 108.0 0.54 T 62.5 46.0 NA NA NA
4dqy 3 P09874 99.8 0.0 X-RAY
2012-05-30 LYS C:282 C:798 104.0 0.52 55.3 46.8 104.0 0.52 0.0
LYS F:282 F:798 105.0 0.525 56.6 46.4 NA NA NA
4zzz 1 P09874 100.0 0.0 X-RAY
2015-08-12 LYS A:146 A:798 124.0 0.62 51.6 39.8 124.0 0.62 0.0 HOH
2.857
O
O
LYS B:146 B:798 128.0 0.64 39.4 48.6 128.0 0.64 0.0 HOH
2.812
O
O
5a00 1 P09874 100.0 0.0 X-RAY
2015-08-12 LYS A:146 A:798 122.0 0.61 T 42.3 56.9 122.0 0.61 0.0
4xhu 1 P09874 99.44 0.0 X-RAY
2015-09-30 LYS A:143 C:798 117.0 0.585 T 43.8 47.9 117.0 0.585 0.0 GOL
HOH
7.009
2.486
CB
O
O1
O
LYS C:143 A:798 64.0 NA 50.7 47.4 NA NA NA
6xvw 1 P09874 100.0 0.0 X-RAY
2020-06-03 LYS A:138 A:798 125.0 0.625 T 49.8 43.4 125.0 0.625 0.0 HOH
3.217
O
O
LYS B:138 B:798 127.0 0.635 T 53.5 39.7 NA NA NA
7kk2 1 P09874 99.72 0.0 X-RAY
2021-01-06 LYS A:139 A:798 125.0 0.625 47.5 45.6 125.0 0.625 0.0 SO4
HOH
7.619
2.855
O
O
O2
O
LYS B:139 B:798 123.0 0.615 48.1 45.8 NA NA NA
7kk3 1 P09874 99.72 0.0 X-RAY
2021-01-06 LYS A:139 A:798 103.0 0.515 45.7 40.9 103.0 0.515 0.0 HOH
2.724
O
O
LYS B:139 B:798 107.0 0.535 T 47.3 41.9 NA NA NA
LYS C:139 C:798 123.0 0.615 46.3 43.2 NA NA NA
LYS D:139 D:798 82.0 0.41 T 46.7 42.7 NA NA NA
7kk4 1 P09874 99.72 0.0 X-RAY
2021-01-06 LYS A:139 A:798 129.0 0.645 T 54.5 43.5 129.0 0.645 0.0 HOH
2.738
O
O
LYS B:139 B:798 126.0 0.63 T 48.4 38.0 NA NA NA
7kk5 1 P09874 99.72 0.0 X-RAY
2021-01-06 LYS A:139 A:798 149.0 0.745 T 49.5 41.5 149.0 0.745 0.0 HOH
2.809
O
O
LYS B:139 B:798 127.0 0.635 48.8 42.7 NA NA NA
LYS C:139 C:798 128.0 0.64 45.6 46.2 NA NA NA
LYS D:139 D:798 83.0 0.415 T 50.7 41.5 NA NA NA
7kk6 1 P09874 99.72 0.0 X-RAY
2021-01-06 LYS A:139 A:798 127.0 0.635 T 48.5 43.6 127.0 0.635 0.0 SO4
HOH
7.984
3.385
O
CD
O1
O
LYS B:139 B:798 119.0 0.595 T 55.1 37.4 NA NA NA
7aaa 1 P09874 99.43 0.0 X-RAY
2021-01-13 LYS A:139 A:798 129.0 0.645 50.3 42.3 129.0 0.645 0.0 HOH
2.766
NZ
O
LYS B:139 B:798 128.0 0.64 50.1 45.0 NA NA NA
7aab 1 P09874 99.43 0.0 X-RAY
2021-01-13 LYS A:139 A:798 79.0 0.395 T 52.3 25.9 79.0 0.395 0.0
LYS B:139 B:798 80.0 0.4 T 59.1 25.6 NA NA NA
7aac 1 P09874 99.43 0.0 X-RAY
2021-01-13 LYS A:139 A:798 129.0 0.645 51.4 43.9 129.0 0.645 0.0 HOH
2.984
O
O
LYS B:139 B:798 120.0 0.6 51.4 44.5 NA NA NA
7aad 1 P09874 99.43 0.0 X-RAY
2021-01-13 LYS A:139 A:798 119.0 0.595 T 51.2 42.7 119.0 0.595 0.0 SO4
HOH
7.687
2.927
O
O
O2
O
LYS B:139 B:798 119.0 0.595 T 51.4 42.8 NA NA NA
7onr 1 P09874 99.43 0.0 X-RAY
2021-09-15 LYS A:139 A:798 130.0 0.65 47.5 45.9 130.0 0.65 0.0 HOH
2.893
O
O
LYS B:139 B:798 125.0 0.625 50.6 43.5 NA NA NA
7ons 1 P09874 99.43 0.0 X-RAY
2021-09-15 LYS A:139 A:798 121.0 0.605 48.8 43.2 121.0 0.605 0.0 SO4
HOH
7.534
2.714
O
O
O2
O
LYS B:139 B:798 114.0 0.57 49.9 43.1 NA NA NA
7ont 1 P09874 99.43 0.0 X-RAY
2021-09-15 LYS A:139 A:798 127.0 0.635 50.6 43.1 127.0 0.635 0.0 HOH
2.630
NZ
O
LYS B:139 B:798 120.0 0.6 T 52.1 42.3 NA NA NA
5ha9 1 P09874 100.0 0.0 X-RAY
2016-03-09 LYS A:138 A:137 91.0 0.455 T 57.5 38.6 91.0 0.455 0.0
LYS B:138 B:137 128.0 0.64 T 51.7 40.4 128.0 0.64 0.0
4hhy 1 P09874 99.43 0.0 X-RAY
2013-03-27 LYS A:142 A:137 109.0 0.545 54.0 36.8 NA NA NA
LYS B:142 B:137 116.0 0.58 T 38.7 42.2 NA NA NA
LYS C:142 C:137 103.0 0.515 T 52.6 36.7 103.0 0.515 0.0 HOH
7.501
O
O
LYS D:142 D:137 88.0 0.44 T 41.6 35.1 NA NA NA
4hhz 1 P09874 99.43 0.0 X-RAY
2013-03-27 LYS A:142 A:137 119.0 0.595 T 52.1 40.8 NA NA NA
LYS B:142 B:137 111.0 0.555 T 41.9 42.4 NA NA NA
LYS C:142 C:137 112.0 0.56 43.0 68.0 112.0 0.56 0.0 HOH
4.607
CA
O
LYS D:142 D:137 111.0 0.555 54.2 31.0 NA NA NA
5xsr 1 P09874 99.43 0.0 X-RAY
2018-04-25 LYS A:142 A:137 106.0 0.53 51.0 43.6 106.0 0.53 0.0 HOH
2.216
NZ
O
5xsu 1 P09874 99.43 0.0 X-RAY
2018-04-25 LYS A:142 A:137 64.0 NA T 49.3 39.2 64.0 NA NA SO4
HOH
7.375
7.537
O
CG
O2
O
LYS B:142 B:137 62.0 NA T 50.0 40.2 NA NA NA
LYS C:142 C:137 61.0 NA T 51.3 39.8 NA NA NA
LYS D:142 D:137 85.0 NA T 52.2 37.5 NA NA NA
1uk0 1 P09874 100.0 0.0 X-RAY
2004-01-27 LYS A:137 A:137 110.0 0.55 31.1 69.0 110.0 0.55 0.0 HOH
3.069
CE
O
LYS B:137 B:137 138.0 0.69 T 27.5 40.3 NA NA NA
1uk1 1 P09874 100.0 0.0 X-RAY
2004-09-14 LYS A:137 A:798 105.0 0.525 T 24.1 55.6 105.0 0.525 0.0 HOH
4.191
CG
O
LYS B:137 B:798 81.0 0.405 T -62.6 105.0 NA NA NA
1wok 1 P09874 100.0 0.0 X-RAY
2005-03-15 LYS A:137 A:798 99.0 0.495 T 57.2 42.3 99.0 0.495 0.0
LYS B:137 B:798 112.0 0.56 T 37.3 35.7 112.0 0.56 0.0
LYS C:137 C:798 96.0 0.48 48.9 53.8 96.0 0.48 0.0
LYS D:137 D:798 98.0 0.49 53.5 39.2 98.0 0.49 0.0
2rcw 1 P09874 100.0 0.0 X-RAY
2008-09-23 LYS A:137 A:137 104.0 0.52 T 60.0 44.1 104.0 0.52 0.0 HOH
3.647
N
O
6vkk 1 P09874 99.72 0.0 X-RAY
2020-06-17 LYS A:159 A:798 118.0 0.59 T 48.0 45.3 118.0 0.59 0.0 GOL
HOH
7.812
2.722
O
O
O2
O
LYS B:159 D:798 102.0 0.51 T 45.9 45.6 NA NA NA
LYS C:159 C:798 128.0 0.64 T 46.1 46.5 NA NA NA
LYS D:159 B:798 119.0 0.595 T 44.7 47.3 NA NA NA
6vko 1 P09874 99.72 0.0 X-RAY
2020-06-17 LYS A:159 A:798 98.0 0.49 T 49.6 32.2 98.0 0.49 0.0 HOH
8.766
O
O
LYS B:159 B:798 102.0 0.51 T 48.6 33.6 NA NA NA
LYS C:159 C:798 102.0 0.51 T 49.2 33.8 NA NA NA
LYS D:159 D:798 117.0 0.585 T 48.4 33.8 NA NA NA
6vkq 1 P09874 99.72 0.0 X-RAY
2020-06-17 LYS A:159 A:798 105.0 0.525 24.0 73.5 105.0 0.525 0.0
LYS B:159 B:798 105.0 0.525 24.4 73.3 NA NA NA
LYS C:159 C:798 104.0 0.52 24.7 73.2 NA NA NA
LYS D:159 D:798 105.0 0.525 24.8 73.0 NA NA NA
4gv7 1 P09874 99.43 0.0 X-RAY
2013-06-19 LYS A:138 A:798 117.0 0.585 T 55.4 41.8 117.0 0.585 0.0
LYS B:138 B:798 121.0 0.605 T 46.6 36.4 NA NA NA
LYS C:138 C:798 114.0 0.57 T 71.0 57.2 NA NA NA
LYS D:138 D:798 112.0 0.56 T 58.6 36.3 NA NA NA
4r5w 1 P09874 99.43 0.0 X-RAY
2015-09-02 LYS A:138 A:798 120.0 0.6 T 44.3 48.1 120.0 0.6 0.0
LYS B:138 B:798 118.0 0.59 T 46.0 47.9 NA NA NA
4r6e 1 P09874 99.43 0.0 X-RAY
2015-09-09 LYS A:138 A:798 109.0 0.545 47.3 41.7 109.0 0.545 0.0 HOH
2.743
O
O
LYS B:138 B:798 108.0 0.54 48.3 41.3 NA NA NA
LYS C:138 C:798 110.0 0.55 48.5 42.0 NA NA NA
LYS D:138 D:798 110.0 0.55 48.6 41.6 NA NA NA
6ghk 1 P09874 99.43 0.0 X-RAY
2019-05-22 LYS A:138 A:798 130.0 0.65 48.1 43.9 130.0 0.65 0.0 HOH
3.306
N
O
LYS B:138 B:798 130.0 0.65 49.2 41.7 NA NA NA
4pjt 1 P09874 100.0 0.0 X-RAY
2014-09-24 LYS A:157 A:798 124.0 0.62 T 52.7 46.1 124.0 0.62 0.0 SO4
HOH
7.626
2.934
O
O
O1
O
LYS B:157 B:798 129.0 0.645 52.3 46.3 NA NA NA
LYS C:157 C:798 32.0 NA T 56.6 44.2 NA NA NA
LYS D:157 D:798 54.0 NA 54.7 44.7 NA NA NA
4rv6 1 P09874 99.71 0.0 X-RAY
2015-12-09 LYS A:139 A:798 119.0 0.595 T 42.5 49.1 119.0 0.595 0.0
LYS B:139 B:798 124.0 0.62 T 42.3 50.3 NA NA NA
LYS C:139 C:798 123.0 0.615 T 43.4 47.9 NA NA NA
LYS D:139 D:798 114.0 0.57 T 43.3 48.8 NA NA NA
4uxb 1 P09874 99.71 0.0 X-RAY
2015-09-02 LYS A:139 A:798 120.0 0.6 T 56.1 66.3 120.0 0.6 0.0 HOH
9.806
O
O
LYS B:139 B:798 119.0 0.595 T 37.3 68.8 NA NA NA
4l6s 1 P09874 99.71 0.0 X-RAY
2013-08-07 LYS A:140 A:798 131.0 0.655 46.8 43.1 131.0 0.655 0.0 HOH
3.145
O
O
LYS B:140 B:798 120.0 0.6 52.6 47.0 NA NA NA
4und 1 P09874 99.71 0.0 X-RAY
2015-06-17 LYS A:160 A:798 113.0 0.565 49.1 41.7 113.0 0.565 0.0 HOH
2.834
O
O
LYS B:160 B:798 108.0 0.54 48.4 42.8 NA NA NA
5kpn 1 P09874 99.71 0.0 X-RAY
2016-12-21 LYS A:139 A:798 138.0 0.69 47.9 44.3 138.0 0.69 0.0
LYS B:139 B:798 120.0 0.6 50.3 48.3 NA NA NA
5kpo 1 P09874 99.71 0.0 X-RAY
2016-12-21 LYS A:139 A:798 117.0 0.585 T 51.6 45.4 117.0 0.585 0.0
LYS B:139 B:798 123.0 0.615 51.8 48.1 NA NA NA
5wrq 1 P09874 99.71 0.0 X-RAY
2017-01-25 LYS A:139 A:798 123.0 0.615 T 51.8 46.2 123.0 0.615 0.0
LYS B:139 B:798 122.0 0.61 T 52.8 49.9 NA NA NA
5wry 1 P09874 99.71 0.0 X-RAY
2017-01-25 LYS A:139 A:798 128.0 0.64 52.1 42.3 128.0 0.64 0.0 HOH
2.961
O
O
LYS B:139 B:798 109.0 0.545 T 52.3 46.6 NA NA NA
5wrz 1 P09874 99.71 0.0 X-RAY
2017-01-25 LYS A:139 A:798 130.0 0.65 48.8 45.7 130.0 0.65 0.0
LYS B:139 B:798 122.0 0.61 T 51.3 44.1 NA NA NA
5ws0 1 P09874 99.71 0.0 X-RAY
2017-01-25 LYS A:139 A:798 132.0 0.66 41.9 45.9 132.0 0.66 0.0
LYS B:139 B:798 124.0 0.62 41.7 49.6 NA NA NA
5ws1 1 P09874 99.71 0.0 X-RAY
2017-01-25 LYS A:139 A:798 142.0 0.71 42.9 48.8 142.0 0.71 0.0
LYS B:139 B:798 137.0 0.685 51.7 44.4 NA NA NA
5wtc 1 P09874 99.71 0.0 X-RAY
2017-01-25 LYS A:139 A:798 132.0 0.66 44.4 46.1 132.0 0.66 0.0
LYS B:139 B:798 118.0 0.59 48.8 45.4 NA NA NA
2rd6 1 P09874 99.71 0.0 X-RAY
2008-09-23 LYS A:137 A:137 114.0 0.57 T 62.5 27.9 114.0 0.57 0.0 HOH
3.026
NZ
O
3gjw 1 P09874 99.71 0.0 X-RAY
2010-03-09 LYS A:137 A:137 119.0 0.595 61.5 30.5 119.0 0.595 0.0 HOH
2.957
O
O
3gn7 1 P09874 99.71 0.0 X-RAY
2010-03-16 LYS A:137 A:137 115.0 0.575 58.2 35.3 115.0 0.575 0.0 HOH
8.479
O
O
3l3l 1 P09874 99.71 0.0 X-RAY
2010-12-22 LYS A:137 A:137 107.0 0.535 T 58.0 40.2 107.0 0.535 0.0 HOH
2.850
O
O
3l3m 1 P09874 99.71 0.0 X-RAY
2010-06-23 LYS A:137 A:137 110.0 0.55 T 55.2 33.5 110.0 0.55 0.0 HOH
3.128
O
O
5kpp 1 P09874 99.71 0.0 X-RAY
2016-11-30 LYS A:137 A:798 122.0 0.61 50.5 46.8 122.0 0.61 0.0 HOH
2.970
O
O
LYS B:137 B:798 115.0 0.575 T 52.2 49.8 NA NA NA
5kpq 1 P09874 99.71 0.0 X-RAY
2016-12-14 LYS A:137 A:798 123.0 0.615 T 48.7 45.5 123.0 0.615 0.0 HOH
7.927
O
O
LYS B:137 B:798 117.0 0.585 53.0 52.6 NA NA NA
7cmw 1 P09874 99.71 0.0 X-RAY
2020-12-16 LYS A:141 A:798 122.0 0.61 T 38.0 49.6 122.0 0.61 0.0 HOH
3.375
N
O
LYS B:141 B:798 115.0 0.575 39.3 47.8 NA NA NA
5xst 1 P09874 99.43 0.0 X-RAY
2018-04-25 LYS A:138 A:137 107.0 0.535 53.4 45.4 107.0 0.535 0.0 HOH
2.837
O
O
6i8m 1 P26446 86.7 0.0 X-RAY
2019-05-01 ARG A:147 A:798 137.0 0.609 40.8 53.9 137.0 0.609 0.0 HOH
2.734
O
O
6i8t 1 P26446 86.7 0.0 X-RAY
2019-05-01 ARG A:147 A:798 135.0 0.6 40.9 49.9 135.0 0.6 0.0 HOH
2.717
O
O
1a26 1 P26446 86.67 0.0 X-RAY
1998-05-27 ARG A:145 A:798 143.0 0.636 52.8 36.9 143.0 0.636 0.0 HOH
3.176
O
O
1pax 1 P26446 86.67 0.0 X-RAY
1997-05-15 ARG A:145 A:798 152.0 0.676 50.6 42.9 152.0 0.676 0.0 HOH
3.114
O
O
2paw 1 P26446 86.67 0.0 X-RAY
1998-05-27 ARG A:145 A:798 152.0 0.676 49.7 45.3 152.0 0.676 0.0 HOH
2.854
O
O
2pax 1 P26446 86.67 0.0 X-RAY
1998-05-27 ARG A:145 A:798 149.0 0.662 T 50.9 42.7 149.0 0.662 0.0 HOH
3.091
O
O
3pax 1 P26446 86.67 0.0 X-RAY
1998-05-27 ARG A:145 A:798 149.0 0.662 48.5 40.5 149.0 0.662 0.0 HOH
3.099
O
O
4pax 1 P26446 86.67 0.0 X-RAY
1998-05-27 ARG A:145 A:798 154.0 0.684 T 51.8 36.6 154.0 0.684 0.0 HOH
3.236
N
O
1efy 1 P26446 86.86 0.0 X-RAY
2001-01-17 ARG A:137 A:798 156.0 0.693 53.2 40.3 156.0 0.693 0.0 HOH
2.870
O
O
6m3i 2 P09874 100.0 3e-162 X-RAY
2021-03-03 LYS B:37 B:798 109.0 0.545 T 49.3 40.4 109.0 0.545 0.0 HOH
2.654
O
O
5ds3 1 P09874 100.0 5e-160 X-RAY
2016-07-27 LYS A:57 A:798 91.0 0.455 49.8 42.5 91.0 0.455 0.0 HOH
2.720
O
O
6bhv 1 P09874 100.0 5e-160 X-RAY
2018-02-28 LYS A:57 A:798 103.0 0.515 T 53.3 35.3 103.0 0.515 0.0 HOH
9.789
O
O
LYS B:57 B:798 122.0 0.61 T 53.6 34.8 NA NA NA
LYS C:57 C:798 134.0 0.67 T 52.8 35.8 NA NA NA
LYS D:57 D:798 102.0 0.51 T 54.2 34.4 NA NA NA
6nrf 1 P09874 100.0 5e-160 X-RAY
2019-08-14 LYS A:57 A:798 109.0 0.545 46.6 41.6 109.0 0.545 0.0 HOH
2.750
O
O
6nrg 1 P09874 100.0 5e-160 X-RAY
2019-08-14 LYS A:57 A:798 113.0 0.565 52.5 39.8 113.0 0.565 0.0 HOH
2.778
O
O
6nrh 1 P09874 100.0 5e-160 X-RAY
2019-08-14 LYS A:57 A:798 120.0 0.6 51.1 43.9 120.0 0.6 0.0 DMS
HOH
3.591
2.751
C
O
C1
O
6nri 1 P09874 100.0 5e-160 X-RAY
2019-08-14 LYS A:57 A:798 104.0 0.52 T 51.2 41.0 104.0 0.52 0.0 HOH
2.472
O
O
6nrj 1 P09874 100.0 5e-160 X-RAY
2019-08-14 LYS A:57 A:798 115.0 0.575 44.0 46.7 115.0 0.575 0.0 HOH
2.632
O
O
6ntu 1 P09874 100.0 5e-160 X-RAY
2020-02-05 LYS A:57 A:798 100.0 0.5 48.3 44.5 100.0 0.5 0.0 HOH
2.604
O
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09874-f1 1 P09874 100.0 0.0 LYS A:798 A:798 120.0 0.6 T 47.5 43.5