Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 226555216 . C A CCDS1554.1:NM_001618.3:c.2371Gat>Tat_NP_001609.2:p.791D>Y Homo sapiens poly(ADP-ribose) polymerase 1 (PARP1), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4opx 2 P09874 100.0 0.0 X-RAY
2014-07-02 ASP B:274 C:791 28.0 0.187 H -66.2 -33.6 28.0 0.187 0.0
ASP D:274 F:791 28.0 0.187 H -66.3 -33.6 NA NA NA
4oqa 2 P09874 100.0 0.0 X-RAY
2014-07-02 ASP B:274 C:791 28.0 0.187 H -66.0 -33.4 28.0 0.187 0.0
ASP D:274 F:791 29.0 0.193 H -65.9 -33.4 NA NA NA
4oqb 2 P09874 100.0 0.0 X-RAY
2014-07-02 ASP B:274 C:791 28.0 0.187 H -66.2 -33.2 28.0 0.187 0.0
ASP D:274 F:791 28.0 0.187 H -66.3 -33.2 NA NA NA
4dqy 3 P09874 99.8 0.0 X-RAY
2012-05-30 ASP C:275 C:791 25.0 0.167 H -65.7 -37.5 25.0 0.167 0.0
ASP F:275 F:791 25.0 0.167 H -66.0 -37.5 NA NA NA
4zzz 1 P09874 100.0 0.0 X-RAY
2015-08-12 ASP A:139 A:791 10.0 0.067 H -69.4 -35.8 10.0 0.067 0.0 HOH
5.041
O
O
ASP B:139 B:791 29.0 0.193 H -89.4 -13.3 29.0 0.193 0.0 HOH
8.506
C
O
5a00 1 P09874 100.0 0.0 X-RAY
2015-08-12 ASP A:139 A:791 16.0 0.107 H -70.6 -39.2 16.0 0.107 0.0 HOH
9.118
CB
O
4xhu 1 P09874 99.44 0.0 X-RAY
2015-09-30 ASP A:136 C:791 65.0 0.433 H -65.4 -41.4 65.0 0.433 0.0 HOH
6.413
O
O
ASP C:136 A:791 41.0 0.273 H -66.0 -41.5 NA NA NA
6xvw 1 P09874 100.0 0.0 X-RAY
2020-06-03 ASP A:131 A:791 16.0 0.107 H -69.1 -32.7 16.0 0.107 0.0 EDO
EDO
HOH
6.099
8.302
5.321
N
OD1
O
O2
C1
O
ASP B:131 B:791 18.0 0.12 H -76.5 -36.1 NA NA NA
7kk2 1 P09874 99.72 0.0 X-RAY
2021-01-06 ASP A:132 A:791 45.0 0.3 H -63.3 -41.0 45.0 0.3 0.0 SO4
HOH
9.218
2.616
O
OD1
O3
O
ASP B:132 B:791 48.0 0.32 H -68.4 -40.5 NA NA NA
7kk3 1 P09874 99.72 0.0 X-RAY
2021-01-06 ASP A:132 A:791 27.0 0.18 H -72.4 -33.5 27.0 0.18 0.0 HOH
6.794
O
O
ASP B:132 B:791 23.0 0.153 H -72.4 -29.7 NA NA NA
ASP C:132 C:791 30.0 0.2 H -66.8 -39.4 NA NA NA
ASP D:132 D:791 40.0 0.267 H -76.3 -25.6 NA NA NA
7kk4 1 P09874 99.72 0.0 X-RAY
2021-01-06 ASP A:132 A:791 25.0 0.167 H -62.7 -38.9 25.0 0.167 0.0 HOH
5.951
OD2
O
ASP B:132 B:791 20.0 0.133 H -74.8 -28.3 NA NA NA
7kk5 1 P09874 99.72 0.0 X-RAY
2021-01-06 ASP A:132 A:791 30.0 0.2 H -65.0 -46.3 30.0 0.2 0.0 HOH
5.233
O
O
ASP B:132 B:791 27.0 0.18 H -71.7 -37.4 NA NA NA
ASP C:132 C:791 28.0 0.187 H -68.6 -39.4 NA NA NA
ASP D:132 D:791 46.0 0.307 H -67.9 -41.2 NA NA NA
7kk6 1 P09874 99.72 0.0 X-RAY
2021-01-06 ASP A:132 A:791 45.0 0.3 H -69.6 -35.6 45.0 0.3 0.0 HOH
3.108
OD1
O
ASP B:132 B:791 40.0 0.267 H -69.5 -40.4 NA NA NA
7aaa 1 P09874 99.43 0.0 X-RAY
2021-01-13 ASP A:132 A:791 47.0 0.313 H -63.6 -45.0 47.0 0.313 0.0 HOH
2.711
OD2
O
ASP B:132 B:791 50.0 0.333 H -65.0 -43.5 NA NA NA
7aab 1 P09874 99.43 0.0 X-RAY
2021-01-13 ASP A:132 A:791 41.0 0.273 H -64.7 -35.5 41.0 0.273 0.0
ASP B:132 B:791 42.0 0.28 H -64.4 -35.4 NA NA NA
7aac 1 P09874 99.43 0.0 X-RAY
2021-01-13 ASP A:132 A:791 49.0 0.327 H -64.4 -43.0 49.0 0.327 0.0 HOH
2.736
OD1
O
ASP B:132 B:791 51.0 0.34 H -65.5 -41.6 NA NA NA
7aad 1 P09874 99.43 0.0 X-RAY
2021-01-13 ASP A:132 A:791 44.0 0.293 H -62.9 -39.9 44.0 0.293 0.0 HOH
6.803
N
O
ASP B:132 B:791 41.0 0.273 H -63.8 -39.0 NA NA NA
7onr 1 P09874 99.43 0.0 X-RAY
2021-09-15 ASP A:132 A:791 54.0 0.36 H -65.9 -40.9 54.0 0.36 0.0 HOH
2.692
OD2
O
ASP B:132 B:791 46.0 0.307 H -65.9 -40.9 NA NA NA
7ons 1 P09874 99.43 0.0 X-RAY
2021-09-15 ASP A:132 A:791 47.0 0.313 H -65.5 -43.1 47.0 0.313 0.0 HOH
2.787
OD2
O
ASP B:132 B:791 48.0 0.32 H -66.8 -41.0 NA NA NA
7ont 1 P09874 99.43 0.0 X-RAY
2021-09-15 ASP A:132 A:791 42.0 0.28 H -67.4 -42.1 42.0 0.28 0.0 HOH
2.665
OD2
O
ASP B:132 B:791 47.0 0.313 H -67.9 -40.9 NA NA NA
5ha9 1 P09874 100.0 0.0 X-RAY
2016-03-09 ASP A:131 A:130 34.0 0.227 H -56.7 -39.9 34.0 0.227 0.0
ASP B:131 B:130 52.0 0.347 H -48.2 -38.8 52.0 0.347 0.0
4hhy 1 P09874 99.43 0.0 X-RAY
2013-03-27 ASP A:135 A:130 33.0 0.22 H -62.9 -37.4 NA NA NA
ASP B:135 B:130 35.0 0.233 H -73.3 -35.4 NA NA NA
ASP C:135 C:130 39.0 0.26 H -65.2 -42.3 39.0 0.26 0.0
ASP D:135 D:130 85.0 0.567 T -75.2 -29.1 NA NA NA
4hhz 1 P09874 99.43 0.0 X-RAY
2013-03-27 ASP A:135 A:130 21.0 0.14 H -59.5 -24.7 NA NA NA
ASP B:135 B:130 31.0 0.207 H -53.0 -43.1 NA NA NA
ASP C:135 C:130 13.0 0.087 H -68.3 -45.1 13.0 0.087 0.0 HOH
6.870
O
O
ASP D:135 D:130 42.0 0.28 H -93.5 -20.0 NA NA NA
5xsr 1 P09874 99.43 0.0 X-RAY
2018-04-25 ASP A:135 A:130 25.0 0.167 H -64.5 -40.6 25.0 0.167 0.0 HOH
5.721
O
O
5xsu 1 P09874 99.43 0.0 X-RAY
2018-04-25 ASP A:135 A:130 37.0 0.247 H -75.4 -34.4 37.0 0.247 0.0
ASP B:135 B:130 49.0 0.327 H -74.2 -37.6 NA NA NA
ASP C:135 C:130 35.0 0.233 H -74.9 -38.8 NA NA NA
ASP D:135 D:130 73.0 0.487 H -73.7 -35.5 NA NA NA
1uk0 1 P09874 100.0 0.0 X-RAY
2004-01-27 ASP A:130 A:130 6.0 0.04 T -92.5 35.1 6.0 0.04 0.0 HOH
2.952
O
O
ASP B:130 B:130 4.0 0.027 H -58.2 -25.5 NA NA NA
1uk1 1 P09874 100.0 0.0 X-RAY
2004-09-14 ASP A:130 A:791 4.0 0.027 H -41.0 -49.3 4.0 0.027 0.0 HOH
5.749
OD1
O
ASP B:130 B:791 26.0 0.173 H -79.2 -39.7 NA NA NA
1wok 1 P09874 100.0 0.0 X-RAY
2005-03-15 ASP A:130 A:791 24.0 0.16 H -60.7 -20.0 24.0 0.16 0.0
ASP B:130 B:791 14.0 0.093 H -41.4 -28.3 14.0 0.093 0.0
ASP C:130 C:791 20.0 0.133 H -62.7 -45.9 20.0 0.133 0.0
ASP D:130 D:791 17.0 0.113 H -58.2 -42.1 17.0 0.113 0.0
2rcw 1 P09874 100.0 0.0 X-RAY
2008-09-23 ASP A:130 A:130 34.0 0.227 H -65.2 -24.3 34.0 0.227 0.0 HOH
6.694
OD1
O
6vkk 1 P09874 99.72 0.0 X-RAY
2020-06-17 ASP A:152 A:791 39.0 0.26 H -64.2 -41.4 39.0 0.26 0.0 HOH
6.790
O
O
ASP B:152 D:791 34.0 0.227 H -63.8 -41.0 NA NA NA
ASP C:152 C:791 23.0 0.153 H -64.1 -41.2 NA NA NA
ASP D:152 B:791 37.0 0.247 H -64.2 -41.2 NA NA NA
6vko 1 P09874 99.72 0.0 X-RAY
2020-06-17 ASP A:152 A:791 71.0 0.473 H -72.3 -24.8 71.0 0.473 0.0
ASP B:152 B:791 69.0 0.46 H -71.9 -24.7 NA NA NA
ASP C:152 C:791 70.0 0.467 H -72.3 -24.8 NA NA NA
ASP D:152 D:791 70.0 0.467 H -72.2 -24.8 NA NA NA
6vkq 1 P09874 99.72 0.0 X-RAY
2020-06-17 ASP A:152 A:791 60.0 0.4 H -67.8 -36.6 60.0 0.4 0.0
ASP B:152 B:791 58.0 0.387 H -68.1 -36.2 NA NA NA
ASP C:152 C:791 58.0 0.387 H -67.9 -36.6 NA NA NA
ASP D:152 D:791 61.0 0.407 H -67.9 -36.6 NA NA NA
4gv7 1 P09874 99.43 0.0 X-RAY
2013-06-19 ASP A:131 A:791 43.0 0.287 H -52.2 -47.9 43.0 0.287 0.0
ASP B:131 B:791 27.0 0.18 H -69.6 -23.5 NA NA NA
ASP C:131 C:791 32.0 0.213 H -53.8 -48.7 NA NA NA
ASP D:131 D:791 31.0 0.207 H -61.9 -36.8 NA NA NA
4r5w 1 P09874 99.43 0.0 X-RAY
2015-09-02 ASP A:131 A:791 24.0 0.16 H -66.8 -40.6 24.0 0.16 0.0
ASP B:131 B:791 26.0 0.173 H -66.7 -39.1 NA NA NA
4r6e 1 P09874 99.43 0.0 X-RAY
2015-09-09 ASP A:131 A:791 16.0 0.107 H -68.5 -39.8 16.0 0.107 0.0 HOH
6.685
O
O
ASP B:131 B:791 22.0 0.147 H -68.6 -39.5 NA NA NA
ASP C:131 C:791 20.0 0.133 H -67.6 -41.1 NA NA NA
ASP D:131 D:791 25.0 0.167 H -68.0 -39.9 NA NA NA
6ghk 1 P09874 99.43 0.0 X-RAY
2019-05-22 ASP A:131 A:791 28.0 0.187 H -71.1 -39.5 28.0 0.187 0.0 HOH
2.788
OD2
O
ASP B:131 B:791 20.0 0.133 H -71.2 -37.7 NA NA NA
4pjt 1 P09874 100.0 0.0 X-RAY
2014-09-24 ASP A:150 A:791 35.0 0.233 H -66.8 -37.1 35.0 0.233 0.0 HOH
6.880
O
O
ASP B:150 B:791 36.0 0.24 H -66.8 -35.9 NA NA NA
ASP C:150 C:791 31.0 0.207 H -65.4 -35.8 NA NA NA
ASP D:150 D:791 42.0 0.28 H -65.1 -36.4 NA NA NA
4rv6 1 P09874 99.71 0.0 X-RAY
2015-12-09 ASP A:132 A:791 33.0 0.22 H -70.1 -45.6 33.0 0.22 0.0
ASP B:132 B:791 32.0 0.213 H -70.0 -44.9 NA NA NA
ASP C:132 C:791 24.0 0.16 H -70.7 -43.9 NA NA NA
ASP D:132 D:791 31.0 0.207 H -70.1 -44.9 NA NA NA
4uxb 1 P09874 99.71 0.0 X-RAY
2015-09-02 ASP A:132 A:791 39.0 0.26 H -67.1 -30.8 39.0 0.26 0.0
ASP B:132 B:791 39.0 0.26 H -62.1 -38.8 NA NA NA
4l6s 1 P09874 99.71 0.0 X-RAY
2013-08-07 ASP A:133 A:791 42.0 0.28 H -65.4 -39.5 42.0 0.28 0.0 HOH
2.798
OD1
O
ASP B:133 B:791 28.0 0.187 H -73.6 -36.9 NA NA NA
4und 1 P09874 99.71 0.0 X-RAY
2015-06-17 ASP A:153 A:791 7.0 0.047 H -66.7 -40.2 7.0 0.047 0.0 HOH
6.458
N
O
ASP B:153 B:791 28.0 0.187 H -64.9 -40.5 NA NA NA
5kpn 1 P09874 99.71 0.0 X-RAY
2016-12-21 ASP A:132 A:791 43.0 0.287 H -65.0 -41.9 43.0 0.287 0.0
ASP B:132 B:791 32.0 0.213 H -67.0 -37.4 NA NA NA
5kpo 1 P09874 99.71 0.0 X-RAY
2016-12-21 ASP A:132 A:791 43.0 0.287 H -62.5 -42.1 43.0 0.287 0.0
ASP B:132 B:791 33.0 0.22 H -65.1 -45.3 NA NA NA
5wrq 1 P09874 99.71 0.0 X-RAY
2017-01-25 ASP A:132 A:791 41.0 0.273 H -65.0 -42.0 41.0 0.273 0.0
ASP B:132 B:791 39.0 0.26 H -65.9 -43.8 NA NA NA
5wry 1 P09874 99.71 0.0 X-RAY
2017-01-25 ASP A:132 A:791 39.0 0.26 H -66.5 -40.1 39.0 0.26 0.0 HOH
6.997
O
O
ASP B:132 B:791 35.0 0.233 H -70.3 -36.9 NA NA NA
5wrz 1 P09874 99.71 0.0 X-RAY
2017-01-25 ASP A:132 A:791 50.0 0.333 H -63.6 -41.0 50.0 0.333 0.0
ASP B:132 B:791 45.0 0.3 H -69.7 -38.7 NA NA NA
5ws0 1 P09874 99.71 0.0 X-RAY
2017-01-25 ASP A:132 A:791 46.0 0.307 H -54.3 -38.7 46.0 0.307 0.0
ASP B:132 B:791 27.0 0.18 H -66.1 -36.9 NA NA NA
5ws1 1 P09874 99.71 0.0 X-RAY
2017-01-25 ASP A:132 A:791 41.0 0.273 H -62.9 -44.6 41.0 0.273 0.0
ASP B:132 B:791 38.0 0.253 H -70.5 -40.8 NA NA NA
5wtc 1 P09874 99.71 0.0 X-RAY
2017-01-25 ASP A:132 A:791 46.0 0.307 H -62.3 -45.4 46.0 0.307 0.0
ASP B:132 B:791 31.0 0.207 H -65.2 -37.5 NA NA NA
2rd6 1 P09874 99.71 0.0 X-RAY
2008-09-23 ASP A:130 A:130 33.0 0.22 H -68.7 -34.7 33.0 0.22 0.0 HOH
4.829
O
O
3gjw 1 P09874 99.71 0.0 X-RAY
2010-03-09 ASP A:130 A:130 34.0 0.227 H -69.4 -34.9 34.0 0.227 0.0 HOH
6.510
O
O
3gn7 1 P09874 99.71 0.0 X-RAY
2010-03-16 ASP A:130 A:130 33.0 0.22 H -56.3 -36.4 33.0 0.22 0.0 HOH
7.109
N
O
3l3l 1 P09874 99.71 0.0 X-RAY
2010-12-22 ASP A:130 A:130 41.0 0.273 H -63.5 -50.2 41.0 0.273 0.0 HOH
6.709
O
O
3l3m 1 P09874 99.71 0.0 X-RAY
2010-06-23 ASP A:130 A:130 27.0 0.18 H -67.4 -31.0 27.0 0.18 0.0 HOH
2.715
OD1
O
5kpp 1 P09874 99.71 0.0 X-RAY
2016-11-30 ASP A:130 A:791 50.0 0.333 H -64.0 -39.4 50.0 0.333 0.0 HOH
5.155
O
O
ASP B:130 B:791 44.0 0.293 H -66.2 -40.4 NA NA NA
5kpq 1 P09874 99.71 0.0 X-RAY
2016-12-14 ASP A:130 A:791 42.0 0.28 H -60.8 -40.4 42.0 0.28 0.0 HOH
6.701
N
O
ASP B:130 B:791 40.0 0.267 H -64.8 -43.1 NA NA NA
7cmw 1 P09874 99.71 0.0 X-RAY
2020-12-16 ASP A:134 A:791 37.0 0.247 H -65.6 -41.8 37.0 0.247 0.0 HOH
3.446
OD1
O
ASP B:134 B:791 42.0 0.28 H -67.1 -42.8 NA NA NA
5xst 1 P09874 99.43 0.0 X-RAY
2018-04-25 ASP A:131 A:130 32.0 0.213 H -63.3 -38.3 32.0 0.213 0.0 HOH
6.929
O
O
6i8m 1 P26446 86.7 0.0 X-RAY
2019-05-01 ASP A:140 A:791 22.0 0.147 H -77.1 -36.1 22.0 0.147 0.0
6i8t 1 P26446 86.7 0.0 X-RAY
2019-05-01 ASP A:140 A:791 26.0 0.173 H -77.8 -35.9 26.0 0.173 0.0 HOH
6.340
O
O
1a26 1 P26446 86.67 0.0 X-RAY
1998-05-27 ASP A:138 A:791 4.0 0.027 H -55.8 -44.0 4.0 0.027 0.0 HOH
6.381
O
O
1pax 1 P26446 86.67 0.0 X-RAY
1997-05-15 ASP A:138 A:791 13.0 0.087 H -58.3 -41.2 13.0 0.087 0.0 HOH
6.654
O
O
2paw 1 P26446 86.67 0.0 X-RAY
1998-05-27 ASP A:138 A:791 8.0 0.053 H -66.7 -36.9 8.0 0.053 0.0 HOH
6.650
O
O
2pax 1 P26446 86.67 0.0 X-RAY
1998-05-27 ASP A:138 A:791 12.0 0.08 H -60.7 -34.4 12.0 0.08 0.0 HOH
6.653
O
O
3pax 1 P26446 86.67 0.0 X-RAY
1998-05-27 ASP A:138 A:791 10.0 0.067 H -59.2 -39.6 10.0 0.067 0.0 HOH
6.550
O
O
4pax 1 P26446 86.67 0.0 X-RAY
1998-05-27 ASP A:138 A:791 11.0 0.073 H -57.3 -38.0 11.0 0.073 0.0 HOH
6.655
O
O
1efy 1 P26446 86.86 0.0 X-RAY
2001-01-17 ASP A:130 A:791 2.0 0.013 H -58.8 -46.6 2.0 0.013 0.0 HOH
3.973
CB
O
6m3i 2 P09874 100.0 3e-162 X-RAY
2021-03-03 ASP B:30 B:791 74.0 0.493 H -67.2 -23.3 74.0 0.493 0.0 HOH
6.976
O
O
5ds3 1 P09874 100.0 5e-160 X-RAY
2016-07-27 ASP A:50 A:791 76.0 0.507 H -62.1 -30.6 76.0 0.507 0.0
6bhv 1 P09874 100.0 5e-160 X-RAY
2018-02-28 ASP A:50 A:791 66.0 0.44 H -66.1 -32.4 66.0 0.44 0.0
ASP B:50 B:791 78.0 0.52 H -66.3 -31.7 NA NA NA
ASP C:50 C:791 104.0 0.693 H -65.6 -32.3 NA NA NA
ASP D:50 D:791 71.0 0.473 H -65.2 -32.9 NA NA NA
6nrf 1 P09874 100.0 5e-160 X-RAY
2019-08-14 ASP A:50 A:791 52.0 0.347 H -70.7 -33.6 52.0 0.347 0.0 HOH
3.001
N
O
6nrg 1 P09874 100.0 5e-160 X-RAY
2019-08-14 ASP A:50 A:791 51.0 0.34 H -74.7 -30.2 51.0 0.34 0.0 HOH
2.956
N
O
6nrh 1 P09874 100.0 5e-160 X-RAY
2019-08-14 ASP A:50 A:791 52.0 0.347 H -71.6 -28.4 52.0 0.347 0.0 DMS
HOH
9.191
2.949
O
N
O
O
6nri 1 P09874 100.0 5e-160 X-RAY
2019-08-14 ASP A:50 A:791 49.0 0.327 H -70.5 -34.9 49.0 0.327 0.0 HOH
6.862
O
O
6nrj 1 P09874 100.0 5e-160 X-RAY
2019-08-14 ASP A:50 A:791 51.0 0.34 H -74.5 -26.0 51.0 0.34 0.0 HOH
2.910
N
O
6ntu 1 P09874 100.0 5e-160 X-RAY
2020-02-05 ASP A:50 A:791 67.0 0.447 H -70.7 -32.9 67.0 0.447 0.0 HOH
6.716
O
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09874-f1 1 P09874 100.0 0.0 ASP A:791 A:791 35.0 0.233 H -67.5 -40.3