Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 226555221 . G A CCDS1554.1:NM_001618.3:c.2366cCc>cTc_NP_001609.2:p.789P>L Homo sapiens poly(ADP-ribose) polymerase 1 (PARP1), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4opx 2 P09874 100.0 0.0 X-RAY
2014-07-02 PRO B:272 C:789 104.0 0.717 H -58.0 -40.8 104.0 0.717 0.0
PRO D:272 F:789 105.0 0.724 H -57.9 -40.9 NA NA NA
4oqa 2 P09874 100.0 0.0 X-RAY
2014-07-02 PRO B:272 C:789 104.0 0.717 H -57.7 -40.9 104.0 0.717 0.0
PRO D:272 F:789 104.0 0.717 H -57.7 -41.1 NA NA NA
4oqb 2 P09874 100.0 0.0 X-RAY
2014-07-02 PRO B:272 C:789 105.0 0.724 H -58.0 -40.7 105.0 0.724 0.0
PRO D:272 F:789 104.0 0.717 H -58.0 -40.8 NA NA NA
4dqy 3 P09874 99.8 0.0 X-RAY
2012-05-30 PRO C:273 C:789 102.0 0.703 H -60.4 -45.4 102.0 0.703 0.0
PRO F:273 F:789 102.0 0.703 H -60.8 -45.9 NA NA NA
4zzz 1 P09874 100.0 0.0 X-RAY
2015-08-12 PRO A:137 A:789 84.0 0.579 H -53.5 -35.4 84.0 0.579 0.0 HOH
7.116
O
O
PRO B:137 B:789 93.0 0.641 H -48.4 -33.2 93.0 0.641 0.0 HOH
6.977
O
O
5a00 1 P09874 100.0 0.0 X-RAY
2015-08-12 PRO A:137 A:789 89.0 0.614 H -47.8 -38.3 89.0 0.614 0.0 HOH
7.355
CD
O
4xhu 1 P09874 99.44 0.0 X-RAY
2015-09-30 PRO A:134 C:789 90.0 0.621 H -49.8 -33.1 90.0 0.621 0.0
PRO C:134 A:789 86.0 0.593 H -49.8 -33.5 NA NA NA
6xvw 1 P09874 100.0 0.0 X-RAY
2020-06-03 PRO A:129 A:789 81.0 0.559 H -44.8 -28.4 81.0 0.559 0.0 EDO
HOH
3.860
7.115
O
O
O2
O
PRO B:129 B:789 82.0 0.566 H -50.7 -31.0 NA NA NA
7kk2 1 P09874 99.72 0.0 X-RAY
2021-01-06 PRO A:130 A:789 87.0 0.6 H -58.3 -22.2 87.0 0.6 0.0 HOH
3.497
N
O
PRO B:130 B:789 87.0 0.6 H -54.2 -29.4 NA NA NA
7kk3 1 P09874 99.72 0.0 X-RAY
2021-01-06 PRO A:130 A:789 87.0 0.6 H -53.2 -29.5 87.0 0.6 0.0
PRO B:130 B:789 86.0 0.593 H -63.2 -31.5 NA NA NA
PRO C:130 C:789 94.0 0.648 H -63.0 -30.5 NA NA NA
PRO D:130 D:789 96.0 0.662 H -59.2 -29.7 NA NA NA
7kk4 1 P09874 99.72 0.0 X-RAY
2021-01-06 PRO A:130 A:789 90.0 0.621 H -48.6 -29.5 90.0 0.621 0.0 HOH
5.184
O
O
PRO B:130 B:789 86.0 0.593 H -57.2 -37.5 NA NA NA
7kk5 1 P09874 99.72 0.0 X-RAY
2021-01-06 PRO A:130 A:789 87.0 0.6 H -54.1 -35.1 87.0 0.6 0.0 HOH
4.321
O
O
PRO B:130 B:789 93.0 0.641 H -52.2 -34.5 NA NA NA
PRO C:130 C:789 90.0 0.621 H -51.7 -31.8 NA NA NA
PRO D:130 D:789 95.0 0.655 H -61.4 -33.4 NA NA NA
7kk6 1 P09874 99.72 0.0 X-RAY
2021-01-06 PRO A:130 A:789 82.0 0.566 H -52.5 -30.5 82.0 0.566 0.0 HOH
3.801
CG
O
PRO B:130 B:789 91.0 0.628 H -56.8 -29.2 NA NA NA
7aaa 1 P09874 99.43 0.0 X-RAY
2021-01-13 PRO A:130 A:789 86.0 0.593 H -59.5 -19.4 86.0 0.593 0.0 HOH
3.543
CA
O
PRO B:130 B:789 87.0 0.6 H -58.0 -20.6 NA NA NA
7aab 1 P09874 99.43 0.0 X-RAY
2021-01-13 PRO A:130 A:789 93.0 0.641 H -53.9 -40.9 93.0 0.641 0.0
PRO B:130 B:789 92.0 0.634 H -53.9 -41.1 NA NA NA
7aac 1 P09874 99.43 0.0 X-RAY
2021-01-13 PRO A:130 A:789 87.0 0.6 H -58.2 -26.5 87.0 0.6 0.0 HOH
3.318
CB
O
PRO B:130 B:789 86.0 0.593 H -56.2 -27.8 NA NA NA
7aad 1 P09874 99.43 0.0 X-RAY
2021-01-13 PRO A:130 A:789 90.0 0.621 H -55.8 -25.9 90.0 0.621 0.0 HOH
4.433
O
O
PRO B:130 B:789 92.0 0.634 H -54.9 -26.4 NA NA NA
7onr 1 P09874 99.43 0.0 X-RAY
2021-09-15 PRO A:130 A:789 89.0 0.614 H -58.0 -29.4 89.0 0.614 0.0 HOH
3.721
N
O
PRO B:130 B:789 90.0 0.621 H -56.1 -30.6 NA NA NA
7ons 1 P09874 99.43 0.0 X-RAY
2021-09-15 PRO A:130 A:789 87.0 0.6 H -58.0 -23.0 87.0 0.6 0.0 HOH
3.637
CA
O
PRO B:130 B:789 92.0 0.634 H -56.6 -24.1 NA NA NA
7ont 1 P09874 99.43 0.0 X-RAY
2021-09-15 PRO A:130 A:789 88.0 0.607 H -59.5 -29.0 88.0 0.607 0.0 HOH
3.606
CB
O
PRO B:130 B:789 88.0 0.607 H -58.0 -30.2 NA NA NA
5ha9 1 P09874 100.0 0.0 X-RAY
2016-03-09 PRO A:129 A:128 88.0 0.607 H -48.5 -29.9 88.0 0.607 0.0
PRO B:129 B:128 97.0 0.669 H -47.4 -42.5 97.0 0.669 0.0
4hhy 1 P09874 99.43 0.0 X-RAY
2013-03-27 PRO A:133 A:128 87.0 0.6 H -53.0 -23.7 NA NA NA
PRO B:133 B:128 91.0 0.628 H -54.0 -38.7 NA NA NA
PRO C:133 C:128 76.0 0.524 H -41.4 -52.9 76.0 0.524 0.0
PRO D:133 D:128 118.0 0.814 360.0 -14.4 NA NA NA
4hhz 1 P09874 99.43 0.0 X-RAY
2013-03-27 PRO A:133 A:128 79.0 0.545 H -59.6 -23.1 NA NA NA
PRO B:133 B:128 87.0 0.6 H -52.6 -32.8 NA NA NA
PRO C:133 C:128 88.0 0.607 H -43.8 -34.0 88.0 0.607 0.0
PRO D:133 NA:NA DO NA DO DO DO NA NA NA
5xsr 1 P09874 99.43 0.0 X-RAY
2018-04-25 PRO A:133 A:128 83.0 0.572 H -51.7 -30.3 83.0 0.572 0.0 HOH
7.261
N
O
5xsu 1 P09874 99.43 0.0 X-RAY
2018-04-25 PRO A:133 A:128 85.0 NA H -60.6 -58.3 85.0 NA NA
PRO B:133 B:128 89.0 0.614 H -61.5 -44.9 NA NA NA
PRO C:133 C:128 68.0 NA H -61.7 -50.7 NA NA NA
PRO D:133 D:128 81.0 NA H -61.4 -56.4 NA NA NA
1uk0 1 P09874 100.0 0.0 X-RAY
2004-01-27 PRO A:128 A:128 82.0 0.566 S -69.5 8.3 82.0 0.566 0.0 HOH
3.429
CB
O
PRO B:128 B:128 73.0 0.503 H -23.7 -76.5 NA NA NA
1uk1 1 P09874 100.0 0.0 X-RAY
2004-09-14 PRO A:128 A:789 79.0 0.545 H -71.2 -35.3 79.0 0.545 0.0 HOH
4.970
O
O
PRO B:128 B:789 92.0 0.634 H -3.7 -87.2 NA NA NA
1wok 1 P09874 100.0 0.0 X-RAY
2005-03-15 PRO A:128 A:789 75.0 0.517 H -50.1 -2.8 75.0 0.517 0.0
PRO B:128 B:789 91.0 0.628 H -46.1 -45.1 91.0 0.628 0.0
PRO C:128 C:789 69.0 0.476 H -49.9 -53.0 69.0 0.476 0.0
PRO D:128 D:789 88.0 0.607 H -30.6 -43.4 88.0 0.607 0.0
2rcw 1 P09874 100.0 0.0 X-RAY
2008-09-23 PRO A:128 A:128 92.0 0.634 H -51.9 -39.6 92.0 0.634 0.0 HOH
8.210
CB
O
6vkk 1 P09874 99.72 0.0 X-RAY
2020-06-17 PRO A:150 A:789 88.0 0.607 H -46.2 -34.6 88.0 0.607 0.0
PRO B:150 D:789 88.0 0.607 H -45.7 -34.0 NA NA NA
PRO C:150 C:789 88.0 0.607 H -46.0 -34.0 NA NA NA
PRO D:150 B:789 87.0 0.6 H -46.1 -33.9 NA NA NA
6vko 1 P09874 99.72 0.0 X-RAY
2020-06-17 PRO A:150 NA:NA DO NA DO DO DO NA NA NA
PRO B:150 NA:NA DO NA DO DO DO NA NA NA
PRO C:150 NA:NA DO NA DO DO DO NA NA NA
PRO D:150 NA:NA DO NA DO DO DO NA NA NA
6vkq 1 P09874 99.72 0.0 X-RAY
2020-06-17 PRO A:150 NA:NA DO NA DO DO DO NA NA NA
PRO B:150 NA:NA DO NA DO DO DO NA NA NA
PRO C:150 NA:NA DO NA DO DO DO NA NA NA
PRO D:150 NA:NA DO NA DO DO DO NA NA NA
4gv7 1 P09874 99.43 0.0 X-RAY
2013-06-19 PRO A:129 A:789 86.0 0.593 H -40.3 -40.4 86.0 0.593 0.0
PRO B:129 B:789 87.0 0.6 H -60.9 -38.5 NA NA NA
PRO C:129 C:789 91.0 0.628 H -63.6 -52.9 NA NA NA
PRO D:129 D:789 89.0 0.614 H -58.3 -40.5 NA NA NA
4r5w 1 P09874 99.43 0.0 X-RAY
2015-09-02 PRO A:129 A:789 88.0 0.607 H -57.9 -16.4 88.0 0.607 0.0
PRO B:129 B:789 89.0 0.614 H -56.4 -17.9 NA NA NA
4r6e 1 P09874 99.43 0.0 X-RAY
2015-09-09 PRO A:129 A:789 91.0 0.628 H -56.9 -30.1 91.0 0.628 0.0
PRO B:129 B:789 89.0 0.614 H -57.3 -29.6 NA NA NA
PRO C:129 C:789 88.0 0.607 H -57.0 -30.1 NA NA NA
PRO D:129 D:789 92.0 0.634 H -56.8 -30.3 NA NA NA
6ghk 1 P09874 99.43 0.0 X-RAY
2019-05-22 PRO A:129 A:789 85.0 0.586 H -57.3 -26.5 85.0 0.586 0.0 HOH
5.579
CB
O
PRO B:129 B:789 98.0 0.676 H -54.4 -30.4 NA NA NA
4pjt 1 P09874 100.0 0.0 X-RAY
2014-09-24 PRO A:148 A:789 86.0 0.593 H -55.4 -35.6 86.0 0.593 0.0
PRO B:148 B:789 85.0 0.586 H -56.2 -35.3 NA NA NA
PRO C:148 C:789 91.0 0.628 H -56.1 -34.8 NA NA NA
PRO D:148 D:789 93.0 0.641 H -56.3 -35.2 NA NA NA
4rv6 1 P09874 99.71 0.0 X-RAY
2015-12-09 PRO A:130 A:789 88.0 0.607 H -59.3 -32.5 88.0 0.607 0.0
PRO B:130 B:789 87.0 0.6 H -59.2 -32.2 NA NA NA
PRO C:130 C:789 88.0 0.607 H -59.3 -33.2 NA NA NA
PRO D:130 D:789 86.0 0.593 H -59.5 -32.8 NA NA NA
4uxb 1 P09874 99.71 0.0 X-RAY
2015-09-02 PRO A:130 A:789 89.0 0.614 H -83.7 -30.4 89.0 0.614 0.0
PRO B:130 B:789 83.0 0.572 H -83.1 -31.4 NA NA NA
4l6s 1 P09874 99.71 0.0 X-RAY
2013-08-07 PRO A:131 A:789 68.0 0.469 H -61.3 -23.6 68.0 0.469 0.0 HOH
3.755
N
O
PRO B:131 B:789 72.0 0.497 H -61.1 -17.1 NA NA NA
4und 1 P09874 99.71 0.0 X-RAY
2015-06-17 PRO A:151 A:789 90.0 0.621 H -56.1 -41.0 90.0 0.621 0.0 HOH
4.754
O
O
PRO B:151 B:789 84.0 0.579 H -56.8 -40.3 NA NA NA
5kpn 1 P09874 99.71 0.0 X-RAY
2016-12-21 PRO A:130 A:789 68.0 0.469 H -52.8 -24.5 68.0 0.469 0.0
PRO B:130 B:789 68.0 0.469 H -63.8 -19.6 NA NA NA
5kpo 1 P09874 99.71 0.0 X-RAY
2016-12-21 PRO A:130 A:789 69.0 0.476 H -57.1 -21.6 69.0 0.476 0.0
PRO B:130 B:789 67.0 0.462 H -55.1 -28.1 NA NA NA
5wrq 1 P09874 99.71 0.0 X-RAY
2017-01-25 PRO A:130 A:789 69.0 0.476 H -60.2 -20.2 69.0 0.476 0.0
PRO B:130 B:789 69.0 0.476 H -56.5 -26.0 NA NA NA
5wry 1 P09874 99.71 0.0 X-RAY
2017-01-25 PRO A:130 A:789 72.0 0.497 H -58.9 -19.2 72.0 0.497 0.0 HOH
4.714
O
O
PRO B:130 B:789 73.0 0.503 H -59.7 -20.1 NA NA NA
5wrz 1 P09874 99.71 0.0 X-RAY
2017-01-25 PRO A:130 A:789 66.0 0.455 H -58.4 -22.6 66.0 0.455 0.0
PRO B:130 B:789 71.0 0.49 H -57.5 -27.9 NA NA NA
5ws0 1 P09874 99.71 0.0 X-RAY
2017-01-25 PRO A:130 A:789 63.0 0.434 H -56.5 -23.2 63.0 0.434 0.0
PRO B:130 B:789 72.0 0.497 H -55.2 -31.3 NA NA NA
5ws1 1 P09874 99.71 0.0 X-RAY
2017-01-25 PRO A:130 A:789 70.0 0.483 H -59.5 -18.5 70.0 0.483 0.0
PRO B:130 B:789 73.0 0.503 H -56.0 -26.8 NA NA NA
5wtc 1 P09874 99.71 0.0 X-RAY
2017-01-25 PRO A:130 A:789 68.0 0.469 H -61.1 -19.5 68.0 0.469 0.0
PRO B:130 B:789 72.0 0.497 H -61.7 -24.5 NA NA NA
2rd6 1 P09874 99.71 0.0 X-RAY
2008-09-23 PRO A:128 A:128 91.0 0.628 H -54.7 -23.4 90.0 0.621 0.007 A:P09874:0.007
HOH
3.728
CG
O
3gjw 1 P09874 99.71 0.0 X-RAY
2010-03-09 PRO A:128 A:128 85.0 0.586 H -30.9 -58.2 85.0 0.586 0.0 HOH
4.600
CD
O
3gn7 1 P09874 99.71 0.0 X-RAY
2010-03-16 PRO A:128 A:128 86.0 0.593 H -43.0 -42.7 86.0 0.593 0.0 HOH
4.509
O
O
3l3l 1 P09874 99.71 0.0 X-RAY
2010-12-22 PRO A:128 A:128 80.0 0.552 H -36.7 -42.4 80.0 0.552 0.0 HOH
3.412
CD
O
3l3m 1 P09874 99.71 0.0 X-RAY
2010-06-23 PRO A:128 A:128 89.0 0.614 H -46.3 -40.2 89.0 0.614 0.0 HOH
5.624
N
O
5kpp 1 P09874 99.71 0.0 X-RAY
2016-11-30 PRO A:128 A:789 81.0 0.559 H -55.1 -25.0 81.0 0.559 0.0 HOH
3.666
CG
O
PRO B:128 B:789 81.0 0.559 H -58.5 -27.7 NA NA NA
5kpq 1 P09874 99.71 0.0 X-RAY
2016-12-14 PRO A:128 A:789 84.0 0.579 H -47.0 -31.5 84.0 0.579 0.0 HOH
3.512
CG
O
PRO B:128 B:789 86.0 0.593 H -49.6 -40.4 NA NA NA
7cmw 1 P09874 99.71 0.0 X-RAY
2020-12-16 PRO A:132 A:789 86.0 0.593 H -53.2 -30.1 86.0 0.593 0.0 HOH
8.167
CD
O
PRO B:132 B:789 85.0 0.586 H -52.9 -29.6 NA NA NA
5xst 1 P09874 99.43 0.0 X-RAY
2018-04-25 PRO A:129 A:128 90.0 0.621 H -60.8 -29.5 90.0 0.621 0.0
6i8m 1 P26446 86.7 0.0 X-RAY
2019-05-01 PRO A:138 A:789 76.0 0.524 H -65.7 -30.6 76.0 0.524 0.0 HOH
9.519
CB
O
6i8t 1 P26446 86.7 0.0 X-RAY
2019-05-01 PRO A:138 A:789 80.0 0.552 H -53.7 -35.8 80.0 0.552 0.0 HOH
8.064
O
O
1a26 1 P26446 86.67 0.0 X-RAY
1998-05-27 PRO A:136 A:789 85.0 0.586 H -55.0 -37.8 85.0 0.586 0.0 HOH
3.982
CG
O
1pax 1 P26446 86.67 0.0 X-RAY
1997-05-15 PRO A:136 A:789 81.0 0.559 H -50.5 -42.9 81.0 0.559 0.0 HOH
4.710
O
O
2paw 1 P26446 86.67 0.0 X-RAY
1998-05-27 PRO A:136 A:789 81.0 0.559 H -54.3 -40.9 81.0 0.559 0.0 HOH
4.460
O
O
2pax 1 P26446 86.67 0.0 X-RAY
1998-05-27 PRO A:136 A:789 83.0 0.572 H -49.7 -42.3 83.0 0.572 0.0 HOH
4.581
O
O
3pax 1 P26446 86.67 0.0 X-RAY
1998-05-27 PRO A:136 A:789 85.0 0.586 H -48.8 -45.7 85.0 0.586 0.0 HOH
4.526
O
O
4pax 1 P26446 86.67 0.0 X-RAY
1998-05-27 PRO A:136 A:789 82.0 0.566 H -47.3 -41.8 82.0 0.566 0.0 HOH
4.459
O
O
1efy 1 P26446 86.86 0.0 X-RAY
2001-01-17 PRO A:128 A:789 76.0 0.524 H -53.7 -34.9 76.0 0.524 0.0 HOH
4.475
O
O
6m3i 2 P09874 100.0 3e-162 X-RAY
2021-03-03 PRO B:28 B:789 88.0 0.607 -70.9 170.3 88.0 0.607 0.0 HOH
9.198
CB
O
5ds3 1 P09874 100.0 5e-160 X-RAY
2016-07-27 PRO A:48 A:789 87.0 0.6 -69.5 168.4 87.0 0.6 0.0
6bhv 1 P09874 100.0 5e-160 X-RAY
2018-02-28 PRO A:48 A:789 122.0 0.841 360.0 137.5 122.0 0.841 0.0
PRO B:48 B:789 123.0 0.848 360.0 137.2 NA NA NA
PRO C:48 C:789 122.0 0.841 360.0 137.2 NA NA NA
PRO D:48 D:789 126.0 0.869 360.0 137.2 NA NA NA
6nrf 1 P09874 100.0 5e-160 X-RAY
2019-08-14 PRO A:48 A:789 79.0 0.545 -66.1 155.0 79.0 0.545 0.0 HOH
3.618
CB
O
6nrg 1 P09874 100.0 5e-160 X-RAY
2019-08-14 PRO A:48 A:789 80.0 0.552 -63.5 154.2 80.0 0.552 0.0 HOH
3.443
CB
O
6nrh 1 P09874 100.0 5e-160 X-RAY
2019-08-14 PRO A:48 A:789 85.0 0.586 -64.3 154.6 85.0 0.586 0.0 HOH
3.414
CA
O
6nri 1 P09874 100.0 5e-160 X-RAY
2019-08-14 PRO A:48 A:789 75.0 0.517 -56.2 148.9 75.0 0.517 0.0 HOH
6.858
N
O
6nrj 1 P09874 100.0 5e-160 X-RAY
2019-08-14 PRO A:48 A:789 81.0 0.559 -63.6 156.5 81.0 0.559 0.0 HOH
3.578
CA
O
6ntu 1 P09874 100.0 5e-160 X-RAY
2020-02-05 PRO A:48 A:789 88.0 0.607 -50.0 150.5 88.0 0.607 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09874-f1 1 P09874 100.0 0.0 PRO A:789 A:789 39.0 0.269 H -53.0 -32.7