Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 226556002 . G A CCDS1554.1:NM_001618.3:c.2175agC>agT_NP_001609.2:p.725S>S Homo sapiens poly(ADP-ribose) polymerase 1 (PARP1), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4opx 2 P09874 100.0 0.0 X-RAY
2014-07-02 SER B:208 C:725 84.0 0.73 -58.0 156.4 84.0 0.73 0.0
SER D:208 F:725 83.0 0.722 -58.1 156.5 NA NA NA
4oqa 2 P09874 100.0 0.0 X-RAY
2014-07-02 SER B:208 C:725 83.0 0.722 -61.1 158.1 83.0 0.722 0.0
SER D:208 F:725 83.0 0.722 -61.3 158.3 NA NA NA
4oqb 2 P09874 100.0 0.0 X-RAY
2014-07-02 SER B:208 C:725 83.0 0.722 -59.8 157.0 83.0 0.722 0.0
SER D:208 F:725 83.0 0.722 -60.0 157.2 NA NA NA
4dqy 3 P09874 99.8 0.0 X-RAY
2012-05-30 SER C:209 C:725 79.0 0.687 -55.5 149.2 79.0 0.687 0.0
SER F:209 F:725 80.0 0.696 -55.5 150.4 NA NA NA
4zzz 1 P09874 100.0 0.0 X-RAY
2015-08-12 SER A:73 A:725 62.0 0.539 -84.9 156.1 62.0 0.539 0.0 HOH
3.193
CB
O
SER B:73 B:725 49.0 0.426 -68.5 153.3 49.0 0.426 0.0 HOH
3.238
CB
O
5a00 1 P09874 100.0 0.0 X-RAY
2015-08-12 SER A:73 A:725 68.0 0.591 -71.5 156.0 68.0 0.591 0.0
4xhu 1 P09874 99.44 0.0 X-RAY
2015-09-30 SER A:70 C:725 55.0 0.478 -77.4 161.7 55.0 0.478 0.0
SER C:70 NA:NA DO NA DO DO DO NA NA NA
6xvw 1 P09874 100.0 0.0 X-RAY
2020-06-03 SER A:65 A:725 84.0 0.73 -162.4 128.8 84.0 0.73 0.0 HOH
9.744
N
O
SER B:65 B:725 47.0 0.409 S -135.8 -17.8 NA NA NA
7kk2 1 P09874 99.72 0.0 X-RAY
2021-01-06 SER A:66 A:725 53.0 0.461 -72.9 168.6 53.0 0.461 0.0 HOH
5.421
OG
O
SER B:66 B:725 14.0 0.122 -124.7 31.2 NA NA NA
7kk3 1 P09874 99.72 0.0 X-RAY
2021-01-06 SER A:66 NA:NA DO NA DO DO DO NA NA NA
SER B:66 B:725 22.0 0.191 -138.9 41.7 NA NA NA
SER C:66 C:725 55.0 0.478 -60.5 152.8 NA NA NA
SER D:66 NA:NA DO NA DO DO DO NA NA NA
7kk4 1 P09874 99.72 0.0 X-RAY
2021-01-06 SER A:66 A:725 70.0 0.609 -56.3 147.9 70.0 0.609 0.0 HOH
2.905
OG
O
SER B:66 B:725 57.0 0.496 -69.0 153.0 NA NA NA
7kk5 1 P09874 99.72 0.0 X-RAY
2021-01-06 SER A:66 NA:NA DO NA DO DO DO NA NA NA
SER B:66 B:725 20.0 0.174 -135.0 33.1 NA NA NA
SER C:66 C:725 60.0 0.522 -61.7 152.0 NA NA NA
SER D:66 NA:NA DO NA DO DO DO NA NA NA
7kk6 1 P09874 99.72 0.0 X-RAY
2021-01-06 SER A:66 A:725 46.0 0.4 -70.0 152.6 46.0 0.4 0.0 HOH
7.527
C
O
SER B:66 B:725 19.0 0.165 -139.6 35.4 NA NA NA
7aaa 1 P09874 99.43 0.0 X-RAY
2021-01-13 SER A:66 A:725 50.0 0.435 -74.4 164.8 50.0 0.435 0.0 HOH
8.558
N
O
SER B:66 B:725 64.0 0.557 -56.2 145.8 NA NA NA
7aab 1 P09874 99.43 0.0 X-RAY
2021-01-13 SER A:66 A:725 68.0 0.591 -61.9 164.5 68.0 0.591 0.0 HOH
5.264
N
O
SER B:66 B:725 65.0 0.565 -61.7 164.1 NA NA NA
7aac 1 P09874 99.43 0.0 X-RAY
2021-01-13 SER A:66 A:725 61.0 0.53 -73.8 168.6 61.0 0.53 0.0 HOH
3.506
CB
O
SER B:66 B:725 21.0 0.183 -121.4 31.6 NA NA NA
7aad 1 P09874 99.43 0.0 X-RAY
2021-01-13 SER A:66 A:725 65.0 0.565 -64.5 148.4 65.0 0.565 0.0
SER B:66 B:725 72.0 0.626 -62.7 135.4 NA NA NA
7onr 1 P09874 99.43 0.0 X-RAY
2021-09-15 SER A:66 A:725 49.0 0.426 -74.1 166.8 49.0 0.426 0.0 HOH
3.105
OG
O
SER B:66 B:725 13.0 0.113 -110.9 30.2 NA NA NA
7ons 1 P09874 99.43 0.0 X-RAY
2021-09-15 SER A:66 A:725 68.0 0.591 -66.7 156.2 68.0 0.591 0.0 HOH
4.955
C
O
SER B:66 B:725 71.0 0.617 -61.7 154.0 NA NA NA
7ont 1 P09874 99.43 0.0 X-RAY
2021-09-15 SER A:66 A:725 49.0 0.426 -69.1 165.6 49.0 0.426 0.0 HOH
3.620
CA
O
SER B:66 B:725 17.0 0.148 -116.2 27.2 NA NA NA
5ha9 1 P09874 100.0 0.0 X-RAY
2016-03-09 SER A:65 A:64 49.0 0.426 -113.5 77.4 49.0 0.426 0.0
SER B:65 B:64 53.0 0.461 -66.9 170.1 53.0 0.461 0.0
4hhy 1 P09874 99.43 0.0 X-RAY
2013-03-27 SER A:69 A:64 96.0 0.835 -116.4 100.3 NA NA NA
SER B:69 B:64 65.0 0.565 -24.7 -82.8 NA NA NA
SER C:69 NA:NA DO NA DO DO DO NA NA NA
SER D:69 D:64 81.0 0.704 -86.7 54.4 NA NA NA
4hhz 1 P09874 99.43 0.0 X-RAY
2013-03-27 SER A:69 A:64 62.0 0.539 -170.9 -27.3 NA NA NA
SER B:69 B:64 116.0 1.0 -67.1 72.8 NA NA NA
SER C:69 C:64 50.0 0.435 -87.6 -14.1 50.0 0.435 0.0
SER D:69 NA:NA DO NA DO DO DO NA NA NA
5xsr 1 P09874 99.43 0.0 X-RAY
2018-04-25 SER A:69 A:64 77.0 0.67 -49.8 130.6 77.0 0.67 0.0 HOH
1.984
OG
O
5xsu 1 P09874 99.43 0.0 X-RAY
2018-04-25 SER A:69 A:64 67.0 NA -55.0 149.6 67.0 NA NA HOH
9.086
O
O
SER B:69 B:64 50.0 NA -177.7 146.5 NA NA NA
SER C:69 NA:NA DO NA DO DO DO NA NA NA
SER D:69 NA:NA DO NA DO DO DO NA NA NA
1uk0 1 P09874 100.0 0.0 X-RAY
2004-01-27 SER A:64 A:64 61.0 0.53 -41.0 124.8 61.0 0.53 0.0 HOH
4.006
C
O
SER B:64 B:64 63.0 0.548 -75.3 138.3 NA NA NA
1uk1 1 P09874 100.0 0.0 X-RAY
2004-09-14 SER A:64 A:725 58.0 0.504 -38.1 92.7 58.0 0.504 0.0 HOH
5.327
CA
O
SER B:64 B:725 71.0 0.617 -46.3 116.3 NA NA NA
1wok 1 P09874 100.0 0.0 X-RAY
2005-03-15 SER A:64 A:725 56.0 0.487 164.9 -167.2 17.0 0.148 0.339 C:P09874:0.339
SER B:64 B:725 78.0 0.678 -102.4 171.3 50.0 0.435 0.243 D:P09874:0.243
SER C:64 C:725 41.0 0.357 -139.7 139.1 13.0 0.113 0.244 A:P09874:0.243
SER D:64 D:725 70.0 0.609 -57.0 140.2 24.0 0.209 0.4 B:P09874:0.4
2rcw 1 P09874 100.0 0.0 X-RAY
2008-09-23 SER A:64 A:64 92.0 0.8 58.0 77.5 92.0 0.8 0.0 HOH
5.456
C
O
6vkk 1 P09874 99.72 0.0 X-RAY
2020-06-17 SER A:86 A:725 55.0 0.478 -61.8 157.3 55.0 0.478 0.0
SER B:86 D:725 55.0 0.478 -61.1 156.1 NA NA NA
SER C:86 C:725 61.0 0.53 -62.2 156.4 NA NA NA
SER D:86 B:725 49.0 0.426 -62.4 157.2 NA NA NA
6vko 1 P09874 99.72 0.0 X-RAY
2020-06-17 SER A:86 A:725 76.0 0.661 79.1 140.5 76.0 0.661 0.0
SER B:86 B:725 75.0 0.652 79.3 140.7 NA NA NA
SER C:86 C:725 76.0 0.661 79.2 140.5 NA NA NA
SER D:86 D:725 75.0 0.652 79.2 140.5 NA NA NA
6vkq 1 P09874 99.72 0.0 X-RAY
2020-06-17 SER A:86 A:725 77.0 0.67 68.2 130.4 77.0 0.67 0.0
SER B:86 B:725 77.0 0.67 68.3 130.5 NA NA NA
SER C:86 C:725 76.0 0.661 68.3 130.4 NA NA NA
SER D:86 D:725 77.0 0.67 68.1 130.5 NA NA NA
4gv7 1 P09874 99.43 0.0 X-RAY
2013-06-19 SER A:65 A:725 63.0 0.548 -91.9 147.0 63.0 0.548 0.0
SER B:65 B:725 70.0 0.609 -69.2 159.1 NA NA NA
SER C:65 C:725 82.0 0.713 -75.9 162.7 NA NA NA
SER D:65 D:725 91.0 0.791 -75.2 168.0 NA NA NA
4r5w 1 P09874 99.43 0.0 X-RAY
2015-09-02 SER A:65 A:725 72.0 0.626 -75.6 151.2 72.0 0.626 0.0
SER B:65 B:725 56.0 0.487 -76.1 151.9 NA NA NA
4r6e 1 P09874 99.43 0.0 X-RAY
2015-09-09 SER A:65 A:725 53.0 0.461 -64.2 153.7 53.0 0.461 0.0 HOH
9.341
O
O
SER B:65 B:725 75.0 0.652 -62.7 153.3 NA NA NA
SER C:65 C:725 82.0 0.713 -63.1 152.8 NA NA NA
SER D:65 D:725 86.0 0.748 -62.8 152.5 NA NA NA
6ghk 1 P09874 99.43 0.0 X-RAY
2019-05-22 SER A:65 A:725 60.0 0.522 -81.2 165.3 60.0 0.522 0.0
SER B:65 B:725 58.0 0.504 -77.5 165.6 NA NA NA
4pjt 1 P09874 100.0 0.0 X-RAY
2014-09-24 SER A:84 NA:NA DO NA DO DO DO NA NA NA
SER B:84 NA:NA DO NA DO DO DO NA NA NA
SER C:84 C:725 67.0 0.583 -50.5 151.7 NA NA NA
SER D:84 NA:NA DO NA DO DO DO NA NA NA
4rv6 1 P09874 99.71 0.0 X-RAY
2015-12-09 SER A:66 A:725 60.0 0.522 -50.7 156.1 60.0 0.522 0.0
SER B:66 B:725 68.0 0.591 -50.2 156.1 NA NA NA
SER C:66 C:725 67.0 0.583 -49.8 154.1 NA NA NA
SER D:66 D:725 67.0 0.583 -48.7 154.1 NA NA NA
4uxb 1 P09874 99.71 0.0 X-RAY
2015-09-02 SER A:66 NA:NA DO NA DO DO DO NA NA NA
SER B:66 B:725 66.0 0.574 -35.1 126.3 NA NA NA
4l6s 1 P09874 99.71 0.0 X-RAY
2013-08-07 SER A:67 A:725 74.0 0.643 360.0 155.5 74.0 0.643 0.0
SER B:67 B:725 18.0 0.157 -127.1 21.6 NA NA NA
4und 1 P09874 99.71 0.0 X-RAY
2015-06-17 SER A:87 A:725 60.0 0.522 -121.7 163.7 60.0 0.522 0.0
SER B:87 B:725 69.0 0.6 -115.7 162.5 NA NA NA
5kpn 1 P09874 99.71 0.0 X-RAY
2016-12-21 SER A:66 A:725 73.0 0.635 360.0 140.1 73.0 0.635 0.0
SER B:66 B:725 62.0 0.539 360.0 85.2 NA NA NA
5kpo 1 P09874 99.71 0.0 X-RAY
2016-12-21 SER A:66 A:725 74.0 0.643 360.0 150.6 74.0 0.643 0.0
SER B:66 B:725 74.0 0.643 360.0 109.1 NA NA NA
5wrq 1 P09874 99.71 0.0 X-RAY
2017-01-25 SER A:66 A:725 79.0 0.687 360.0 159.1 79.0 0.687 0.0
SER B:66 B:725 74.0 0.643 360.0 114.1 NA NA NA
5wry 1 P09874 99.71 0.0 X-RAY
2017-01-25 SER A:66 A:725 82.0 0.713 360.0 173.7 82.0 0.713 0.0 HOH
2.770
N
O
SER B:66 B:725 19.0 0.165 -145.2 28.8 NA NA NA
5wrz 1 P09874 99.71 0.0 X-RAY
2017-01-25 SER A:66 A:725 83.0 0.722 360.0 173.5 83.0 0.722 0.0
SER B:66 B:725 84.0 0.73 360.0 76.2 NA NA NA
5ws0 1 P09874 99.71 0.0 X-RAY
2017-01-25 SER A:66 A:725 74.0 0.643 360.0 173.3 74.0 0.643 0.0
SER B:66 B:725 73.0 0.635 360.0 82.8 NA NA NA
5ws1 1 P09874 99.71 0.0 X-RAY
2017-01-25 SER A:66 A:725 80.0 0.696 360.0 166.0 80.0 0.696 0.0
SER B:66 B:725 77.0 0.67 360.0 110.9 NA NA NA
5wtc 1 P09874 99.71 0.0 X-RAY
2017-01-25 SER A:66 A:725 75.0 0.652 360.0 144.1 75.0 0.652 0.0
SER B:66 B:725 64.0 0.557 360.0 79.2 NA NA NA
2rd6 1 P09874 99.71 0.0 X-RAY
2008-09-23 SER A:64 A:64 114.0 0.991 -75.8 60.5 112.0 0.974 0.017 A:P09874:0.017
HOH
2.921
O
O
3gjw 1 P09874 99.71 0.0 X-RAY
2010-03-09 SER A:64 A:64 98.0 0.852 -83.1 90.9 98.0 0.852 0.0 HOH
4.526
OG
O
3gn7 1 P09874 99.71 0.0 X-RAY
2010-03-16 SER A:64 A:64 101.0 0.878 -84.5 55.9 101.0 0.878 0.0 HOH
4.779
OG
O
3l3l 1 P09874 99.71 0.0 X-RAY
2010-12-22 SER A:64 A:64 117.0 1.0 -78.0 67.5 117.0 1.0 0.0 HOH
3.689
O
O
3l3m 1 P09874 99.71 0.0 X-RAY
2010-06-23 SER A:64 A:64 121.0 1.0 -63.1 47.6 121.0 1.0 0.0 HOH
4.173
CA
O
5kpp 1 P09874 99.71 0.0 X-RAY
2016-11-30 SER A:64 A:725 70.0 0.609 360.0 147.2 70.0 0.609 0.0
SER B:64 B:725 64.0 0.557 360.0 179.8 NA NA NA
5kpq 1 P09874 99.71 0.0 X-RAY
2016-12-14 SER A:64 A:725 75.0 0.652 360.0 145.4 75.0 0.652 0.0 HOH
7.151
C
O
SER B:64 B:725 70.0 0.609 360.0 98.8 NA NA NA
7cmw 1 P09874 99.71 0.0 X-RAY
2020-12-16 SER A:68 A:725 71.0 0.617 -52.6 141.3 71.0 0.617 0.0
SER B:68 B:725 62.0 0.539 -57.8 149.9 NA NA NA
5xst 1 P09874 99.43 0.0 X-RAY
2018-04-25 SER A:65 A:64 52.0 NA -68.6 85.2 52.0 NA NA
6i8m 1 P26446 86.7 0.0 X-RAY
2019-05-01 SER A:74 A:725 52.0 0.452 -71.6 152.9 52.0 0.452 0.0 HOH
5.733
O
O
6i8t 1 P26446 86.7 0.0 X-RAY
2019-05-01 SER A:74 A:725 54.0 0.47 -65.5 150.5 54.0 0.47 0.0 HOH
6.728
OG
O
1a26 1 P26446 86.67 0.0 X-RAY
1998-05-27 SER A:72 A:725 80.0 0.696 -54.8 146.2 80.0 0.696 0.0 HOH
4.287
N
O
1pax 1 P26446 86.67 0.0 X-RAY
1997-05-15 SER A:72 A:725 78.0 0.678 -56.9 145.0 78.0 0.678 0.0 HOH
3.219
OG
O
2paw 1 P26446 86.67 0.0 X-RAY
1998-05-27 SER A:72 A:725 76.0 0.661 -47.6 141.8 76.0 0.661 0.0 HOH
3.025
N
O
2pax 1 P26446 86.67 0.0 X-RAY
1998-05-27 SER A:72 A:725 78.0 0.678 -54.6 146.1 78.0 0.678 0.0 HOH
3.248
OG
O
3pax 1 P26446 86.67 0.0 X-RAY
1998-05-27 SER A:72 A:725 76.0 0.661 -56.5 146.4 76.0 0.661 0.0 HOH
3.688
OG
O
4pax 1 P26446 86.67 0.0 X-RAY
1998-05-27 SER A:72 A:725 80.0 0.696 -53.8 147.0 80.0 0.696 0.0
1efy 1 P26446 86.86 0.0 X-RAY
2001-01-17 SER A:64 A:725 67.0 0.583 -62.4 144.3 67.0 0.583 0.0 HOH
3.945
CB
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09874-f1 1 P09874 100.0 0.0 SER A:725 A:725 68.0 0.591 -58.0 147.0