Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 226562006 . T A CCDS1554.1:NM_001618.3:c.1991aAg>aTg_NP_001609.2:p.664K>M Homo sapiens poly(ADP-ribose) polymerase 1 (PARP1), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4opx 2 P09874 100.0 0.0 X-RAY
2014-07-02 LYS B:147 C:664 193.0 0.965 -98.4 76.2 193.0 0.965 0.0
LYS D:147 F:664 192.0 0.96 -98.4 76.2 NA NA NA
4oqa 2 P09874 100.0 0.0 X-RAY
2014-07-02 LYS B:147 C:664 192.0 0.96 -100.4 75.7 192.0 0.96 0.0
LYS D:147 F:664 191.0 0.955 -100.4 75.7 NA NA NA
4oqb 2 P09874 100.0 0.0 X-RAY
2014-07-02 LYS B:147 C:664 192.0 0.96 -98.1 76.4 192.0 0.96 0.0
LYS D:147 F:664 192.0 0.96 -98.1 76.4 NA NA NA
4dqy 3 P09874 99.8 0.0 X-RAY
2012-05-30 LYS C:148 C:664 191.0 0.955 -100.7 76.6 191.0 0.955 0.0
LYS F:148 F:664 192.0 0.96 -100.6 76.9 NA NA NA
4zzz 1 P09874 100.0 0.0 X-RAY
2015-08-12 LYS A:12 A:664 154.0 0.77 -107.4 -0.1 154.0 0.77 0.0 HOH
8.243
O
O
LYS B:12 B:664 210.0 1.0 360.0 -18.6 210.0 1.0 0.0 HOH
6.689
O
O
5a00 1 P09874 100.0 0.0 X-RAY
2015-08-12 LYS A:12 A:664 175.0 0.875 -85.7 -12.5 175.0 0.875 0.0 HOH
7.940
O
O
4xhu 1 P09874 99.44 0.0 X-RAY
2015-09-30 LYS A:9 NA:NA DO NA DO DO DO NA NA NA
LYS C:9 A:664 123.0 NA -99.6 1.9 NA NA NA
6xvw 1 P09874 100.0 0.0 X-RAY
2020-06-03 LYS A:4 A:664 191.0 0.955 -105.1 0.3 191.0 0.955 0.0 EDO
HOH
4.224
5.549
O
NZ
C2
O
LYS B:4 B:664 176.0 0.88 -96.3 6.9 NA NA NA
7kk2 1 P09874 99.72 0.0 X-RAY
2021-01-06 LYS A:5 A:664 203.0 1.0 -99.5 1.8 203.0 1.0 0.0 HOH
2.885
N
O
LYS B:5 B:664 185.0 0.925 -105.9 6.4 NA NA NA
7kk3 1 P09874 99.72 0.0 X-RAY
2021-01-06 LYS A:5 A:664 193.0 0.965 -78.4 -14.6 193.0 0.965 0.0 HOH
8.363
O
O
LYS B:5 B:664 196.0 0.98 -87.7 -15.4 NA NA NA
LYS C:5 C:664 203.0 1.0 -96.7 4.5 NA NA NA
LYS D:5 D:664 202.0 1.0 -79.7 -37.0 NA NA NA
7kk4 1 P09874 99.72 0.0 X-RAY
2021-01-06 LYS A:5 A:664 186.0 0.93 -88.9 -25.3 186.0 0.93 0.0 HOH
3.833
C
O
LYS B:5 B:664 185.0 0.925 S -83.6 40.4 NA NA NA
7kk5 1 P09874 99.72 0.0 X-RAY
2021-01-06 LYS A:5 A:664 182.0 0.91 -91.7 -4.9 182.0 0.91 0.0 HOH
3.141
O
O
LYS B:5 B:664 203.0 1.0 -90.1 -4.1 NA NA NA
LYS C:5 C:664 203.0 1.0 -93.3 -1.2 NA NA NA
LYS D:5 D:664 200.0 1.0 -89.3 -13.5 NA NA NA
7kk6 1 P09874 99.72 0.0 X-RAY
2021-01-06 LYS A:5 A:664 209.0 1.0 -91.5 -4.8 209.0 1.0 0.0 HOH
2.694
O
O
LYS B:5 B:664 185.0 0.925 -104.1 5.7 NA NA NA
7aaa 1 P09874 99.43 0.0 X-RAY
2021-01-13 LYS A:5 A:664 107.0 NA -95.3 1.0 107.0 NA NA HOH
4.908
N
O
LYS B:5 B:664 209.0 1.0 -95.8 0.7 NA NA NA
7aab 1 P09874 99.43 0.0 X-RAY
2021-01-13 LYS A:5 A:664 199.0 0.995 -99.7 -3.3 199.0 0.995 0.0
LYS B:5 B:664 197.0 0.985 -96.4 -3.9 NA NA NA
7aac 1 P09874 99.43 0.0 X-RAY
2021-01-13 LYS A:5 A:664 104.0 NA -99.4 0.7 104.0 NA NA HOH
2.842
N
O
LYS B:5 B:664 207.0 1.0 -99.4 0.2 NA NA NA
7aad 1 P09874 99.43 0.0 X-RAY
2021-01-13 LYS A:5 A:664 105.0 NA -92.8 -5.2 105.0 NA NA HOH
8.117
O
O
LYS B:5 B:664 207.0 1.0 -92.4 -6.0 NA NA NA
7onr 1 P09874 99.43 0.0 X-RAY
2021-09-15 LYS A:5 A:664 106.0 NA -98.8 -2.7 106.0 NA NA HOH
3.021
N
O
LYS B:5 B:664 207.0 1.0 -99.5 -2.7 NA NA NA
7ons 1 P09874 99.43 0.0 X-RAY
2021-09-15 LYS A:5 A:664 104.0 NA -95.1 -2.4 104.0 NA NA HOH
2.813
N
O
LYS B:5 B:664 206.0 1.0 -95.6 -0.6 NA NA NA
7ont 1 P09874 99.43 0.0 X-RAY
2021-09-15 LYS A:5 A:664 104.0 NA -96.6 0.6 104.0 NA NA HOH
2.930
N
O
LYS B:5 B:664 198.0 0.99 -96.1 -1.8 NA NA NA
5ha9 1 P09874 100.0 0.0 X-RAY
2016-03-09 LYS A:4 A:3 196.0 0.98 -112.9 28.5 196.0 0.98 0.0
LYS B:4 B:3 202.0 1.0 -87.9 -14.4 202.0 1.0 0.0
4hhy 1 P09874 99.43 0.0 X-RAY
2013-03-27 LYS A:8 A:3 204.0 1.0 -85.1 -18.9 NA NA NA
LYS B:8 B:3 194.0 0.97 -74.8 -41.0 NA NA NA
LYS C:8 C:3 206.0 1.0 -88.9 0.5 206.0 1.0 0.0
LYS D:8 NA:NA DO NA DO DO DO NA NA NA
4hhz 1 P09874 99.43 0.0 X-RAY
2013-03-27 LYS A:8 A:3 180.0 0.9 -102.3 -5.0 NA NA NA
LYS B:8 B:3 178.0 0.89 -95.8 -18.3 NA NA NA
LYS C:8 C:3 181.0 0.905 -66.5 -41.2 181.0 0.905 0.0
LYS D:8 D:3 212.0 1.0 -86.7 -9.0 NA NA NA
5xsr 1 P09874 99.43 0.0 X-RAY
2018-04-25 LYS A:8 A:3 100.0 NA -82.7 -5.2 100.0 NA NA HOH
6.204
O
O
5xsu 1 P09874 99.43 0.0 X-RAY
2018-04-25 LYS A:8 A:3 97.0 NA -94.9 -11.9 97.0 NA NA
LYS B:8 B:3 100.0 NA -92.4 1.6 NA NA NA
LYS C:8 C:3 97.0 NA -82.1 1.1 NA NA NA
LYS D:8 NA:NA DO NA DO DO DO NA NA NA
1uk0 1 P09874 100.0 0.0 X-RAY
2004-01-27 LYS A:3 A:3 155.0 0.775 38.7 -86.0 155.0 0.775 0.0 HOH
3.181
NZ
O
LYS B:3 B:3 166.0 0.83 -62.6 -19.9 NA NA NA
1uk1 1 P09874 100.0 0.0 X-RAY
2004-09-14 LYS A:3 A:664 163.0 0.815 -37.5 -14.7 163.0 0.815 0.0 HOH
5.405
NZ
O
LYS B:3 B:664 196.0 0.98 -123.0 55.3 NA NA NA
1wok 1 P09874 100.0 0.0 X-RAY
2005-03-15 LYS A:3 A:664 170.0 0.85 -95.5 1.4 170.0 0.85 0.0
LYS B:3 B:664 125.0 0.625 -123.8 21.0 125.0 0.625 0.0
LYS C:3 C:664 183.0 0.915 S -91.1 32.7 183.0 0.915 0.0
LYS D:3 D:664 134.0 0.67 -165.5 -26.4 134.0 0.67 0.0
2rcw 1 P09874 100.0 0.0 X-RAY
2008-09-23 LYS A:3 A:3 179.0 0.895 -108.5 -18.6 179.0 0.895 0.0 HOH
3.219
CG
O
6vkk 1 P09874 99.72 0.0 X-RAY
2020-06-17 LYS A:25 A:664 188.0 0.94 -95.0 0.9 188.0 0.94 0.0
LYS B:25 D:664 196.0 0.98 -94.3 -0.3 NA NA NA
LYS C:25 C:664 189.0 0.945 -94.3 -0.0 NA NA NA
LYS D:25 B:664 198.0 0.99 -94.5 0.9 NA NA NA
6vko 1 P09874 99.72 0.0 X-RAY
2020-06-17 LYS A:25 A:664 220.0 1.0 360.0 -38.3 220.0 1.0 0.0
LYS B:25 B:664 224.0 1.0 360.0 -36.2 NA NA NA
LYS C:25 C:664 224.0 1.0 360.0 -41.1 NA NA NA
LYS D:25 D:664 224.0 1.0 360.0 -40.7 NA NA NA
6vkq 1 P09874 99.72 0.0 X-RAY
2020-06-17 LYS A:25 A:664 223.0 1.0 360.0 40.4 223.0 1.0 0.0
LYS B:25 B:664 222.0 1.0 360.0 38.6 NA NA NA
LYS C:25 C:664 223.0 1.0 360.0 36.9 NA NA NA
LYS D:25 D:664 224.0 1.0 360.0 38.6 NA NA NA
4gv7 1 P09874 99.43 0.0 X-RAY
2013-06-19 LYS A:4 A:664 200.0 1.0 -76.9 10.4 200.0 1.0 0.0
LYS B:4 B:664 212.0 1.0 -80.8 -30.7 NA NA NA
LYS C:4 C:664 214.0 1.0 -82.7 7.5 NA NA NA
LYS D:4 D:664 205.0 1.0 -104.3 -44.6 NA NA NA
4r5w 1 P09874 99.43 0.0 X-RAY
2015-09-02 LYS A:4 A:664 187.0 0.935 -108.0 12.0 187.0 0.935 0.0 HOH
8.149
O
O
LYS B:4 B:664 195.0 0.975 -106.9 11.8 NA NA NA
4r6e 1 P09874 99.43 0.0 X-RAY
2015-09-09 LYS A:4 A:664 159.0 0.795 -96.3 -0.8 159.0 0.795 0.0
LYS B:4 B:664 189.0 0.945 -96.4 -0.5 NA NA NA
LYS C:4 C:664 194.0 0.97 -95.3 -1.0 NA NA NA
LYS D:4 D:664 215.0 1.0 -96.1 -0.8 NA NA NA
6ghk 1 P09874 99.43 0.0 X-RAY
2019-05-22 LYS A:4 A:664 189.0 0.945 -99.7 11.7 189.0 0.945 0.0 HOH
6.275
N
O
LYS B:4 B:664 168.0 0.84 -99.5 10.5 NA NA NA
4pjt 1 P09874 100.0 0.0 X-RAY
2014-09-24 LYS A:23 A:664 99.0 NA -82.3 -8.9 99.0 NA NA HOH
6.829
O
O
LYS B:23 B:664 101.0 NA -80.1 -9.4 NA NA NA
LYS C:23 C:664 101.0 NA -83.5 -1.7 NA NA NA
LYS D:23 D:664 100.0 NA -81.1 -9.7 NA NA NA
4rv6 1 P09874 99.71 0.0 X-RAY
2015-12-09 LYS A:5 A:664 212.0 1.0 -88.9 -3.3 212.0 1.0 0.0
LYS B:5 B:664 212.0 1.0 -86.8 -5.2 NA NA NA
LYS C:5 C:664 206.0 1.0 -88.7 -5.8 NA NA NA
LYS D:5 D:664 207.0 1.0 -90.2 -2.9 NA NA NA
4uxb 1 P09874 99.71 0.0 X-RAY
2015-09-02 LYS A:5 A:664 185.0 0.925 -94.9 14.9 185.0 0.925 0.0
LYS B:5 B:664 210.0 1.0 -115.1 3.3 NA NA NA
4l6s 1 P09874 99.71 0.0 X-RAY
2013-08-07 LYS A:6 A:664 176.0 0.88 -101.3 1.2 176.0 0.88 0.0 HOH
2.794
N
O
LYS B:6 B:664 186.0 0.93 -107.0 14.4 NA NA NA
4und 1 P09874 99.71 0.0 X-RAY
2015-06-17 LYS A:26 A:664 160.0 0.8 S -90.9 6.0 160.0 0.8 0.0 HOH
3.548
C
O
LYS B:26 B:664 171.0 0.855 -100.1 6.5 NA NA NA
5kpn 1 P09874 99.71 0.0 X-RAY
2016-12-21 LYS A:5 A:664 187.0 0.935 -88.2 -5.2 187.0 0.935 0.0
LYS B:5 B:664 176.0 0.88 -109.9 8.8 NA NA NA
5kpo 1 P09874 99.71 0.0 X-RAY
2016-12-21 LYS A:5 A:664 182.0 0.91 -95.7 10.8 182.0 0.91 0.0
LYS B:5 B:664 173.0 0.865 -108.0 8.8 NA NA NA
5wrq 1 P09874 99.71 0.0 X-RAY
2017-01-25 LYS A:5 A:664 179.0 0.895 -96.7 13.3 179.0 0.895 0.0
LYS B:5 B:664 173.0 0.865 -114.8 11.1 NA NA NA
5wry 1 P09874 99.71 0.0 X-RAY
2017-01-25 LYS A:5 A:664 177.0 0.885 -103.5 17.0 177.0 0.885 0.0 HOH
2.872
NZ
O
LYS B:5 B:664 193.0 0.965 -100.7 3.5 NA NA NA
5wrz 1 P09874 99.71 0.0 X-RAY
2017-01-25 LYS A:5 A:664 188.0 0.94 -99.7 3.2 188.0 0.94 0.0
LYS B:5 B:664 167.0 0.835 -106.7 10.5 NA NA NA
5ws0 1 P09874 99.71 0.0 X-RAY
2017-01-25 LYS A:5 A:664 188.0 0.94 -84.9 0.2 188.0 0.94 0.0
LYS B:5 B:664 167.0 0.835 -113.6 6.9 NA NA NA
5ws1 1 P09874 99.71 0.0 X-RAY
2017-01-25 LYS A:5 A:664 174.0 0.87 -89.3 -2.1 174.0 0.87 0.0
LYS B:5 B:664 164.0 0.82 -100.9 12.1 NA NA NA
5wtc 1 P09874 99.71 0.0 X-RAY
2017-01-25 LYS A:5 A:664 186.0 0.93 -97.6 -3.0 186.0 0.93 0.0
LYS B:5 B:664 172.0 0.86 -109.0 10.8 NA NA NA
2rd6 1 P09874 99.71 0.0 X-RAY
2008-09-23 LYS A:3 A:3 187.0 0.935 -91.0 -3.8 187.0 0.935 0.0 HOH
3.638
CG
O
3gjw 1 P09874 99.71 0.0 X-RAY
2010-03-09 LYS A:3 A:3 182.0 0.91 -105.4 16.8 182.0 0.91 0.0 HOH
4.291
C
O
3gn7 1 P09874 99.71 0.0 X-RAY
2010-03-16 LYS A:3 A:3 184.0 0.92 -90.6 -26.0 184.0 0.92 0.0 HOH
6.220
O
O
3l3l 1 P09874 99.71 0.0 X-RAY
2010-12-22 LYS A:3 A:3 193.0 0.965 -95.1 -5.3 193.0 0.965 0.0 HOH
7.775
O
O
3l3m 1 P09874 99.71 0.0 X-RAY
2010-06-23 LYS A:3 A:3 195.0 0.975 -87.0 -8.5 195.0 0.975 0.0 HOH
5.625
N
O
5kpp 1 P09874 99.71 0.0 X-RAY
2016-11-30 LYS A:3 A:664 213.0 1.0 -96.9 7.6 213.0 1.0 0.0
LYS B:3 B:664 214.0 1.0 -101.2 5.9 NA NA NA
5kpq 1 P09874 99.71 0.0 X-RAY
2016-12-14 LYS A:3 A:664 208.0 1.0 -95.4 2.8 208.0 1.0 0.0
LYS B:3 B:664 209.0 1.0 -121.5 16.7 NA NA NA
7cmw 1 P09874 99.71 0.0 X-RAY
2020-12-16 LYS A:7 A:664 173.0 0.865 -101.3 10.5 173.0 0.865 0.0 HOH
2.612
O
O
LYS B:7 B:664 199.0 0.995 -111.3 25.6 NA NA NA
5xst 1 P09874 99.43 0.0 X-RAY
2018-04-25 LYS A:4 A:3 93.0 NA -79.0 -11.2 93.0 NA NA HOH
8.019
O
O
6i8m 1 P26446 86.7 0.0 X-RAY
2019-05-01 LYS A:13 A:664 96.0 NA -91.0 3.1 96.0 NA NA HOH
7.655
O
O
6i8t 1 P26446 86.7 0.0 X-RAY
2019-05-01 LYS A:13 A:664 104.0 NA -102.8 21.5 104.0 NA NA HOH
2.982
O
O
1a26 1 P26446 86.67 0.0 X-RAY
1998-05-27 LYS A:11 A:664 153.0 0.765 -101.5 4.6 153.0 0.765 0.0 HOH
4.778
O
O
1pax 1 P26446 86.67 0.0 X-RAY
1997-05-15 LYS A:11 A:664 190.0 0.95 -91.1 -15.0 190.0 0.95 0.0 HOH
5.813
N
O
2paw 1 P26446 86.67 0.0 X-RAY
1998-05-27 LYS A:11 A:664 186.0 0.93 -89.0 -6.8 186.0 0.93 0.0 HOH
5.622
N
O
2pax 1 P26446 86.67 0.0 X-RAY
1998-05-27 LYS A:11 A:664 192.0 0.96 -91.3 -15.8 192.0 0.96 0.0 HOH
5.876
N
O
3pax 1 P26446 86.67 0.0 X-RAY
1998-05-27 LYS A:11 A:664 191.0 0.955 -88.2 -19.5 191.0 0.955 0.0 HOH
5.729
N
O
4pax 1 P26446 86.67 0.0 X-RAY
1998-05-27 LYS A:11 A:664 188.0 0.94 -87.4 -21.0 188.0 0.94 0.0 HOH
6.193
N
O
1efy 1 P26446 86.86 0.0 X-RAY
2001-01-17 LYS A:3 A:664 168.0 0.84 -81.9 -16.1 168.0 0.84 0.0 HOH
4.207
CD
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09874-f1 1 P09874 100.0 0.0 LYS A:664 A:664 208.0 1.0 -90.7 -0.5