Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 228284870 . C A CCDS1565.1:NM_001024226.1:c.55Cgc>Agc_NP_001019397.1:p.19R>S Homo sapiens ADP ribosylation factor 1 (ARF1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1r8q 1 P84080 100.0 9e-135 X-RAY
 2004-01-20 ARG A:19 A:19 55.0 0.244 E -127.5 131.1 55.0 0.244 0.0 AFB
HOH
 5.281
4.001
 NH2
CA
 C16
O
ARG C:19 B:19 57.0 0.253 E -117.2 133.1 NA NA NA
1rrf 1 P84079 100.0 9e-135 X-RAY
 1996-06-20 ARG A:19 A:19 66.0 0.293 E -133.1 125.4 66.0 0.293 0.0
1rrg 1 P84079 100.0 9e-135 X-RAY
 1996-06-20 ARG A:19 A:19 36.0 0.16 E -135.2 137.8 36.0 0.16 0.0 HOH
 2.982
 NH1
 O
ARG B:19 B:19 26.0 0.116 E -152.6 132.4 26.0 0.116 0.0 HOH
 2.607
 NH2
 O
1hur 1 P84077 100.0 9e-134 X-RAY
 1995-07-10 ARG A:18 A:19 33.0 0.147 E -139.5 127.9 33.0 0.147 0.0 HOH
 2.957
 NH1
 O
ARG B:18 B:19 32.0 0.142 E -132.7 135.1 32.0 0.142 0.0 HOH
 3.748
 NH1
 O
3o47 1 Q8N6T3,P84077 99.42 7e-125 X-RAY
 2010-08-11 ARG A:167 A:149 6.0 0.027 E -112.9 145.3 6.0 0.027 0.0
ARG B:167 B:149 42.0 NA E -76.8 108.6 NA NA NA
7dn8 2 P84077 98.21 4e-122 X-RAY
 2021-12-15 ARG B:7 D:19 53.0 0.236 E -92.5 127.5 39.0 0.173 0.063 A:Q8ZPY9:0.062
 HOH
 3.234
 CG
 O
ARG D:7 B:19 51.0 0.227 E -90.4 127.7 NA NA NA
ARG F:7 F:19 37.0 0.164 E -90.6 127.5 NA NA NA
ARG H:7 H:19 43.0 0.191 E -91.7 127.9 NA NA NA
6cm9 3 P84077 96.53 6e-122 EM
 2018-08-08 ARG D:31 C:19 58.0 0.258 E -91.2 161.6 36.0 0.16 0.098 C:Q10567:0.098
ARG F:31 H:19 66.0 0.293 E -71.0 130.6 20.0 0.089 0.204 E:P22892:0.204
6d83 3 P84077 96.53 6e-122 EM
 2018-08-08 ARG D:31 C:19 65.0 0.289 E -90.0 158.7 40.0 0.178 0.111 C:Q10567:0.111
ARG F:31 H:19 59.0 0.262 E -73.6 123.0 21.0 0.093 0.169 E:P22892:0.169
6d84 3 P84077 96.53 6e-122 EM
 2018-08-08 ARG D:31 C:19 64.0 0.284 E -99.6 158.2 44.0 0.196 0.088 C:Q10567:0.089
ARG F:31 H:19 57.0 0.253 E -74.8 121.8 22.0 0.098 0.155 E:P22892:0.156
ARG L:31 I:19 64.0 0.284 E -98.0 161.9 40.0 0.178 0.106 K:Q10567:0.107
ARG N:31 N:19 56.0 0.249 E -77.9 121.5 19.0 0.084 0.165 M:P22892:0.164
6dff 3 P84077 96.53 6e-122 EM
 2018-08-08 ARG D:31 C:19 66.0 0.293 E -92.0 151.0 39.0 0.173 0.12 C:Q10567:0.12
ARG F:31 H:19 63.0 0.28 E -75.3 117.8 22.0 0.098 0.182 E:P22892:0.182
7mge 4 P84077 100.0 1e-121 EM
 2021-06-23 ARG D:5 E:19 54.0 0.24 E -87.9 126.0 15.0 0.067 0.173 C:Q96LT7:0.173
1r8s 1 P84080 100.0 2e-121 X-RAY
 2004-01-20 ARG A:2 A:19 120.0 0.533 E -79.1 141.7 80.0 0.356 0.177 B:Q99418:0.178
 BME
HOH
 3.349
2.834
 NH1
NH1
 C1
O
1re0 1 P32889 100.0 2e-121 X-RAY
 2003-12-16 ARG A:2 A:19 109.0 0.484 E -109.8 138.8 73.0 0.324 0.16 B:P47102:0.16
 AFB
HOH
 7.825
3.969
 NH1
CB
 C16
O
1s9d 1 P84080 100.0 2e-121 X-RAY
 2004-02-10 ARG A:2 A:19 82.0 0.364 -64.9 -34.2 82.0 0.364 0.0 AFB
HOH
 8.768
2.700
 N
NH1
 C16
O
1u81 1 P84077 100.0 2e-121 NMR
 2004-10-05 ARG A:2 A:19 52.0 0.231 B -117.3 124.5 52.0 0.231 0.0
4c0a 2 P84080 100.0 2e-121 X-RAY
 2013-09-25 ARG C:2 C:19 58.0 0.258 E -84.0 121.1 NA NA NA
ARG D:2 D:19 58.0 0.258 E -83.4 121.2 NA NA NA
ARG G:2 G:19 56.0 0.249 E -85.2 121.4 21.0 0.093 0.156 B:Q6DN90:0.156
ARG H:2 H:19 60.0 0.267 360.0 120.7 NA NA NA
6fae 2 P84077 98.8 4e-121 X-RAY
 2018-01-17 ARG B:51 B:19 56.0 0.249 E -109.5 128.7 19.0 0.084 0.165 A:Q5JU85:0.164
 HOH
 3.329
 NH1
 O
6cri 3 P84077 99.39 5e-121 EM
 2018-08-01 ARG C:3 C:19 62.0 0.276 E -99.3 162.8 41.0 0.182 0.094 B:Q10567:0.093
ARG E:3 H:19 53.0 0.236 E -78.1 120.0 21.0 0.093 0.143 D:P22892:0.142
ARG K:3 K:19 56.0 0.249 E -91.6 160.3 37.0 0.164 0.085 J:Q10567:0.084
ARG M:3 U:19 56.0 0.249 E -78.1 120.8 21.0 0.093 0.156 L:P22892:0.156
ARG S:3 L:19 54.0 0.24 E -87.8 167.3 33.0 0.147 0.093 R:Q10567:0.093
ARG U:3 V:19 62.0 0.276 E -80.9 119.2 23.0 0.102 0.174 T:P22892:0.173
7dn9 2 P84077 99.39 5e-121 X-RAY
 2021-12-15 ARG B:3 B:19 51.0 0.227 E -96.8 123.0 40.0 0.178 0.049 A:Q8ZPY9:0.049
ARG D:3 D:19 52.0 0.231 E -96.4 123.2 NA NA NA
ARG F:3 F:19 48.0 0.213 E -96.3 123.2 NA NA NA
ARG H:3 H:19 53.0 0.236 E -96.6 122.9 NA NA NA
4hmy 5 P84077 99.39 6e-121 X-RAY
 2013-03-06 ARG E:10 C:19 46.0 0.204 E -71.1 123.8 12.0 0.053 0.151 B:Q10567:0.151
1j2j 1 Q8BSL7 99.39 4e-120 X-RAY
 2003-05-06 ARG A:4 A:19 55.0 0.244 E -89.1 119.2 44.0 0.196 0.048 B:Q9UJY5:0.049
 IOD
HOH
 3.706
3.053
 CG
NH1
 I
O
1o3y 1 P84078 99.39 4e-120 X-RAY
 2003-05-20 ARG A:4 A:19 53.0 0.236 E -87.4 118.2 53.0 0.236 0.0 HOH
 2.816
 NH2
 O
ARG B:4 B:19 56.0 0.249 E -87.8 120.3 NA NA NA
2j59 1 P84078 99.39 4e-120 X-RAY
 2007-02-20 ARG A:4 A:19 47.0 0.209 E -87.9 121.7 36.0 0.16 0.049 G:Q8NI19:0.049
 HOH
 3.326
 N
 O
ARG B:4 B:19 47.0 0.209 E -89.3 117.9 NA NA NA
ARG C:4 C:19 51.0 0.227 E -90.8 119.2 NA NA NA
ARG D:4 D:19 45.0 0.2 E -88.6 120.9 NA NA NA
ARG E:4 E:19 48.0 0.213 E -93.7 121.7 NA NA NA
ARG F:4 F:19 49.0 0.218 E -92.4 116.9 NA NA NA
6ii6 2 P61204 98.18 1e-119 X-RAY
 2019-08-07 ARG C:7 C:19 84.0 0.373 E -90.6 127.5 12.0 0.053 0.32 A:None:0.32
 HOH
 3.399
 N
 O
ARG D:7 D:19 89.0 0.396 E -95.7 131.5 NA NA NA
3aq4 1 P36397 88.33 1e-116 X-RAY
 2011-01-26 ARG A:22 A:19 53.0 0.236 E -123.6 142.5 53.0 0.236 0.0 HOH
 3.360
 CZ
 O
ARG B:22 B:19 98.0 0.436 E -119.2 136.8 NA NA NA
5uf8 1 Q5AND9 85.08 1e-114 X-RAY
 2017-01-25 ARG A:19 A:19 56.0 0.249 E -118.1 139.8 56.0 0.249 0.0 HOH
 2.740
 NH2
 O
ARG B:19 B:19 30.0 0.133 E -136.5 135.8 NA NA NA
ARG C:19 C:19 62.0 0.276 E -118.9 142.9 NA NA NA
ARG D:19 D:19 34.0 0.151 E -128.0 136.9 NA NA NA
6pta 1 P22274 84.18 4e-112 X-RAY
 2019-07-24 ARG A:19 A:19 33.0 0.147 E -139.0 128.5 33.0 0.147 0.0 HOH
 9.474
 NH2
 O
ARG B:19 B:19 30.0 0.133 E -142.4 132.3 NA NA NA
ARG C:19 C:19 48.0 0.213 E -118.8 123.0 48.0 0.213 0.0 HOH
 4.665
 CG
 O
ARG D:19 D:19 47.0 0.209 E -134.5 116.7 NA NA NA
1z6x 1 P18085 81.92 2e-108 X-RAY
 2005-04-12 ARG A:19 A:19 16.0 0.071 E -94.1 137.6 16.0 0.071 0.0 HOH
 9.108
 NH2
 O
ARG B:19 B:19 37.0 0.164 E -121.8 145.3 NA NA NA
2b6h 1 P84085 83.14 9e-107 X-RAY
 2005-10-11 ARG A:31 A:19 85.0 0.378 E -118.1 111.0 85.0 0.378 0.0 UNX
HOH
 4.511
2.877
 CD
NH2
 UNK
O
4ylg 1 C4LXL1 80.12 6e-102 X-RAY
 2015-05-20 ARG A:15 A:15 68.0 0.302 E -105.9 121.5 68.0 0.302 0.0 HOH
 2.868
 N
 O
ARG B:15 B:15 64.0 0.284 E -102.7 118.5 64.0 0.284 0.0 HOH
 3.632
 NH2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p84077-f1 1 P84077 100.0 4e-135 ARG A:19 A:19 55.0 0.244 -86.2 110.8
af-p61204-f1 1 P61204 96.13 2e-130 ARG A:19 A:19 52.0 0.231 E -86.4 114.6
af-p18085-f1 1 P18085 81.92 1e-108 ARG A:19 A:19 49.0 0.218 -88.0 114.8
af-p84085-f1 1 P84085 81.92 1e-108 ARG A:19 A:19 62.0 0.276 -83.8 118.1