Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 228285327 | . | C | A | CCDS1565.1:NM_001024226.1:c.295Cgt>Agt_NP_001019397.1:p.99R>S | Homo sapiens ADP ribosylation factor 1 (ARF1), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1r8q | 1 | P84080 | 100.0 | 9e-135 |
X-RAY |
2004-01-20 | ARG | A:99 | A:99 | 69.0 | 0.307 | G | -114.2 | 7.4 | 69.0 | 0.307 | 0.0 |
G3D HOH |
7.709 2.434 |
NH1 NH2 |
O3B O |
||
ARG | C:99 | B:99 | 73.0 | 0.324 | G | -110.8 | 6.5 | NA | NA | NA | |||||||||||||
1rrf | 1 | P84079 | 100.0 | 9e-135 |
X-RAY |
1996-06-20 | ARG | A:99 | A:99 | 49.0 | 0.218 | H | -82.4 | -6.5 | 49.0 | 0.218 | 0.0 |
GDP |
8.359 |
NH1 |
O3B |
||
1rrg | 1 | P84079 | 100.0 | 9e-135 |
X-RAY |
1996-06-20 | ARG | A:99 | A:99 | 64.0 | 0.284 | S | -113.0 | 17.1 | 64.0 | 0.284 | 0.0 |
GDP HOH |
8.348 3.355 |
NH1 NH1 |
O3B O |
||
ARG | B:99 | B:99 | 46.0 | 0.204 | T | -87.0 | 13.8 | 46.0 | 0.204 | 0.0 |
GDP HOH |
8.177 3.506 |
NH1 NH1 |
O3B O |
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1hur | 1 | P84077 | 100.0 | 9e-134 |
X-RAY |
1995-07-10 | ARG | A:98 | A:99 | 79.0 | 0.351 | T | -96.2 | 22.4 | 79.0 | 0.351 | 0.0 |
GDP HOH |
7.695 3.056 |
NH2 NH1 |
O2B O |
||
ARG | B:98 | B:99 | 61.0 | 0.271 | G | -122.7 | 13.2 | 61.0 | 0.271 | 0.0 |
GDP HOH |
8.182 3.153 |
NH1 NH1 |
O2B O |
|||||||||
3o47 | 1 | Q8N6T3,P84077 | 99.42 | 7e-125 |
X-RAY |
2010-08-11 | ARG | A:247 | A:229 | 56.0 | 0.249 | S | -93.1 | 9.5 | 56.0 | 0.249 | 0.0 |
GDP |
7.683 |
NH2 |
O2B |
||
ARG | B:247 | B:229 | 60.0 | 0.267 | S | -93.1 | 9.4 | NA | NA | NA | |||||||||||||
7dn8 | 2 | P84077 | 98.21 | 4e-122 |
X-RAY |
2021-12-15 | ARG | B:87 | D:99 | 56.0 | 0.249 | G | -122.1 | 10.1 | 56.0 | 0.249 | 0.0 |
GDP HOH |
8.256 3.340 |
NH1 CD |
O3B O |
||
ARG | D:87 | B:99 | 56.0 | 0.249 | G | -122.7 | 10.4 | NA | NA | NA | |||||||||||||
ARG | F:87 | F:99 | 55.0 | 0.244 | G | -122.4 | 10.0 | NA | NA | NA | |||||||||||||
ARG | H:87 | H:99 | 57.0 | 0.253 | G | -122.8 | 10.2 | NA | NA | NA | |||||||||||||
6cm9 | 3 | P84077 | 96.53 | 6e-122 |
EM |
2018-08-08 | ARG | D:111 | C:99 | 90.0 | 0.4 | H | -117.3 | -10.9 | 90.0 | 0.4 | 0.0 |
GTP |
8.984 |
NH2 |
O2G |
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ARG | F:111 | H:99 | 59.0 | 0.262 | T | -113.6 | -1.9 | 59.0 | 0.262 | 0.0 |
GTP |
8.805 |
NH2 |
O3G |
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6d83 | 3 | P84077 | 96.53 | 6e-122 |
EM |
2018-08-08 | ARG | D:111 | C:99 | 81.0 | 0.36 | H | -92.7 | -6.0 | 81.0 | 0.36 | 0.0 |
GTP |
8.200 |
NH2 |
O3G |
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ARG | F:111 | H:99 | 58.0 | 0.258 | G | -119.1 | 9.3 | 58.0 | 0.258 | 0.0 |
GTP |
8.842 |
NH2 |
O3B |
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6d84 | 3 | P84077 | 96.53 | 6e-122 |
EM |
2018-08-08 | ARG | D:111 | C:99 | 88.0 | 0.391 | H | -97.3 | -4.7 | 88.0 | 0.391 | 0.0 |
GTP |
8.657 |
NH2 |
O3G |
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ARG | F:111 | H:99 | 55.0 | 0.244 | G | -104.6 | 11.7 | 55.0 | 0.244 | 0.0 |
GTP |
8.666 |
NH2 |
O3B |
|||||||||
ARG | L:111 | I:99 | 87.0 | 0.387 | T | -100.8 | -2.3 | 87.0 | 0.387 | 0.0 |
GTP |
8.844 |
NH2 |
O1G |
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ARG | N:111 | N:99 | 59.0 | 0.262 | G | -125.6 | 6.3 | 59.0 | 0.262 | 0.0 |
GTP |
8.906 |
NH2 |
O1B |
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6dff | 3 | P84077 | 96.53 | 6e-122 |
EM |
2018-08-08 | ARG | D:111 | C:99 | 87.0 | 0.387 | H | -111.2 | -12.8 | 87.0 | 0.387 | 0.0 |
GTP |
8.623 |
NH2 |
O2G |
||
ARG | F:111 | H:99 | 61.0 | 0.271 | T | -97.5 | 2.9 | 61.0 | 0.271 | 0.0 |
GTP |
8.517 |
NH2 |
O3G |
|||||||||
7mge | 4 | P84077 | 100.0 | 1e-121 |
EM |
2021-06-23 | ARG | D:85 | E:99 | 70.0 | 0.311 | S | 42.8 | 27.5 | 70.0 | 0.311 | 0.0 |
GDP |
9.255 |
NH2 |
O2B |
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1r8s | 1 | P84080 | 100.0 | 2e-121 |
X-RAY |
2004-01-20 | ARG | A:82 | A:99 | 44.0 | 0.196 | G | -112.2 | 9.5 | 44.0 | 0.196 | 0.0 |
GDP SO4 HOH |
7.931 8.854 3.107 |
NH1 NH1 O |
O3B O2 O |
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1re0 | 1 | P32889 | 100.0 | 2e-121 |
X-RAY |
2003-12-16 | ARG | A:82 | A:99 | 77.0 | 0.342 | T | -105.5 | 7.5 | 77.0 | 0.342 | 0.0 |
GDP HOH |
7.530 3.631 |
NH2 C |
O3B O |
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1s9d | 1 | P84080 | 100.0 | 2e-121 |
X-RAY |
2004-02-10 | ARG | A:82 | A:99 | 73.0 | 0.324 | G | -110.6 | 15.2 | 69.0 | 0.307 | 0.017 |
B:Q99418:0.018 |
GDP HOH |
7.828 2.985 |
NH1 NH2 |
O3B O |
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1u81 | 1 | P84077 | 100.0 | 2e-121 |
NMR |
2004-10-05 | ARG | A:82 | A:99 | 76.0 | 0.338 | S | -104.8 | 6.9 | 76.0 | 0.338 | 0.0 |
GDP |
7.893 |
HH22 |
O3B |
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4c0a | 2 | P84080 | 100.0 | 2e-121 |
X-RAY |
2013-09-25 | ARG | C:82 | C:99 | 57.0 | 0.253 | T | -107.3 | 6.9 | NA | NA | NA | ||||||
ARG | D:82 | D:99 | 58.0 | 0.258 | T | -108.3 | 6.5 | NA | NA | NA | |||||||||||||
ARG | G:82 | G:99 | 58.0 | 0.258 | T | -107.6 | 6.4 | 58.0 | 0.258 | 0.0 |
G3D |
7.880 |
NH1 |
O3B |
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ARG | H:82 | H:99 | 56.0 | 0.249 | T | -108.4 | 6.6 | NA | NA | NA | |||||||||||||
6fae | 2 | P84077 | 98.8 | 4e-121 |
X-RAY |
2018-01-17 | ARG | B:131 | B:99 | 53.0 | 0.236 | G | -114.5 | 5.9 | 35.0 | 0.156 | 0.08 |
A:Q5JU85:0.08 |
HOH |
3.417 |
CA |
O |
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6cri | 3 | P84077 | 99.39 | 5e-121 |
EM |
2018-08-01 | ARG | C:83 | C:99 | 84.0 | 0.373 | H | -115.0 | -7.0 | 84.0 | 0.373 | 0.0 |
GTP |
8.918 |
NH2 |
O2G |
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ARG | E:83 | H:99 | 58.0 | 0.258 | T | -108.2 | -0.1 | 58.0 | 0.258 | 0.0 |
GTP |
9.231 |
NH2 |
O3B |
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ARG | K:83 | K:99 | 86.0 | 0.382 | H | -120.8 | -4.7 | 86.0 | 0.382 | 0.0 |
GTP |
9.197 |
NH2 |
O2G |
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ARG | M:83 | U:99 | 60.0 | 0.267 | T | -105.0 | 2.9 | 60.0 | 0.267 | 0.0 |
GTP |
9.284 |
NH2 |
O3G |
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ARG | S:83 | L:99 | 89.0 | 0.396 | H | -121.4 | -4.8 | 89.0 | 0.396 | 0.0 |
GTP |
9.215 |
NH2 |
O2G |
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ARG | U:83 | V:99 | 58.0 | 0.258 | T | -99.1 | 1.9 | 58.0 | 0.258 | 0.0 |
GTP |
9.112 |
NH2 |
O3B |
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7dn9 | 2 | P84077 | 99.39 | 5e-121 |
X-RAY |
2021-12-15 | ARG | B:83 | B:99 | 57.0 | 0.253 | G | -120.9 | 7.1 | 57.0 | 0.253 | 0.0 |
GDP |
8.571 |
NH1 |
O2B |
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ARG | D:83 | D:99 | 57.0 | 0.253 | G | -120.5 | 6.5 | NA | NA | NA | |||||||||||||
ARG | F:83 | F:99 | 56.0 | 0.249 | G | -120.5 | 6.8 | NA | NA | NA | |||||||||||||
ARG | H:83 | H:99 | 55.0 | 0.244 | G | -120.5 | 6.5 | NA | NA | NA | |||||||||||||
4hmy | 5 | P84077 | 99.39 | 6e-121 |
X-RAY |
2013-03-06 | ARG | E:90 | C:99 | 60.0 | 0.267 | G | -102.8 | 8.3 | 60.0 | 0.267 | 0.0 |
GTP |
6.537 |
NH2 |
O1G |
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1j2j | 1 | Q8BSL7 | 99.39 | 4e-120 |
X-RAY |
2003-05-06 | ARG | A:84 | A:99 | 53.0 | 0.236 | G | -116.3 | 13.4 | 53.0 | 0.236 | 0.0 |
GTP HOH |
7.736 2.764 |
NH2 NH1 |
O1G O |
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1o3y | 1 | P84078 | 99.39 | 4e-120 |
X-RAY |
2003-05-20 | ARG | A:84 | A:99 | 54.0 | 0.24 | G | -109.0 | 7.5 | 54.0 | 0.24 | 0.0 |
GTP HOH |
7.759 3.281 |
NH2 NH2 |
O1G O |
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ARG | B:84 | B:99 | 58.0 | 0.258 | G | -113.1 | 17.4 | NA | NA | NA | |||||||||||||
2j59 | 1 | P84078 | 99.39 | 4e-120 |
X-RAY |
2007-02-20 | ARG | A:84 | A:99 | 52.0 | 0.231 | S | -115.1 | 9.6 | 52.0 | 0.231 | 0.0 |
GTP HOH |
7.632 2.735 |
NH2 NH1 |
O1G O |
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ARG | B:84 | B:99 | 55.0 | 0.244 | G | -115.9 | 8.2 | NA | NA | NA | |||||||||||||
ARG | C:84 | C:99 | 56.0 | 0.249 | T | -112.6 | 4.4 | NA | NA | NA | |||||||||||||
ARG | D:84 | D:99 | 54.0 | 0.24 | G | -113.6 | 7.6 | NA | NA | NA | |||||||||||||
ARG | E:84 | E:99 | 55.0 | 0.244 | G | -114.0 | 7.5 | NA | NA | NA | |||||||||||||
ARG | F:84 | F:99 | 53.0 | 0.236 | T | -116.1 | 9.7 | NA | NA | NA | |||||||||||||
6ii6 | 2 | P61204 | 98.18 | 1e-119 |
X-RAY |
2019-08-07 | ARG | C:87 | C:99 | 50.0 | 0.222 | T | -113.9 | 9.8 | 50.0 | 0.222 | 0.0 |
GTP HOH |
7.806 2.970 |
NH2 NH1 |
O1G O |
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ARG | D:87 | D:99 | 51.0 | 0.227 | T | -111.6 | 13.3 | NA | NA | NA | |||||||||||||
3aq4 | 1 | P36397 | 88.33 | 1e-116 |
X-RAY |
2011-01-26 | ARG | A:102 | A:99 | 68.0 | 0.302 | G | -116.6 | 1.9 | 68.0 | 0.302 | 0.0 |
GDP HOH |
7.672 3.341 |
NH1 NH2 |
O3B O |
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ARG | B:102 | B:99 | 68.0 | 0.302 | G | -115.8 | 10.1 | NA | NA | NA | |||||||||||||
5uf8 | 1 | Q5AND9 | 85.08 | 1e-114 |
X-RAY |
2017-01-25 | ARG | A:99 | A:99 | 58.0 | 0.258 | G | -121.3 | 13.7 | 58.0 | 0.258 | 0.0 |
GDP HOH |
7.835 3.132 |
NH2 O |
O1B O |
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ARG | B:99 | B:99 | 52.0 | 0.231 | G | -117.4 | 13.5 | NA | NA | NA | |||||||||||||
ARG | C:99 | C:99 | 59.0 | 0.262 | G | -119.0 | 15.2 | NA | NA | NA | |||||||||||||
ARG | D:99 | D:99 | 70.0 | 0.311 | G | -117.0 | 15.6 | NA | NA | NA | |||||||||||||
6pta | 1 | P22274 | 84.18 | 4e-112 |
X-RAY |
2019-07-24 | ARG | A:99 | A:99 | 56.0 | 0.249 | G | -117.6 | 14.4 | 56.0 | 0.249 | 0.0 |
GDP HOH |
8.217 3.229 |
NH1 CD |
O2B O |
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ARG | B:99 | B:99 | 57.0 | 0.253 | G | -118.6 | 15.4 | NA | NA | NA | |||||||||||||
ARG | C:99 | C:99 | 56.0 | 0.249 | T | -113.5 | 11.5 | 56.0 | 0.249 | 0.0 |
GDP HOH |
8.060 3.662 |
NH1 NH1 |
O2B O |
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ARG | D:99 | D:99 | 60.0 | 0.267 | S | -115.1 | 9.5 | NA | NA | NA | |||||||||||||
1z6x | 1 | P18085 | 81.92 | 2e-108 |
X-RAY |
2005-04-12 | ARG | A:99 | A:99 | 53.0 | 0.236 | G | -101.0 | 14.0 | 53.0 | 0.236 | 0.0 |
GDP HOH |
8.086 2.694 |
NH2 NH2 |
O3B O |
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ARG | B:99 | B:99 | 65.0 | 0.289 | T | -76.2 | 10.8 | NA | NA | NA | |||||||||||||
2b6h | 1 | P84085 | 83.14 | 9e-107 |
X-RAY |
2005-10-11 | ARG | A:111 | A:99 | 60.0 | 0.267 | G | -107.3 | 8.0 | 60.0 | 0.267 | 0.0 |
GDP UNX UNX HOH |
7.818 5.369 3.649 3.504 |
NH1 O C CA |
O1B UNK UNK O |
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4ylg | 1 | C4LXL1 | 80.12 | 6e-102 |
X-RAY |
2015-05-20 | ARG | A:95 | A:95 | 57.0 | 0.253 | G | -112.5 | 14.3 | 57.0 | 0.253 | 0.0 |
GDP HOH |
7.833 2.894 |
NH1 NH2 |
O3B O |
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ARG | B:95 | B:95 | 56.0 | 0.249 | T | -114.1 | -0.1 | 56.0 | 0.249 | 0.0 |
GDP HOH |
7.463 2.949 |
NH1 NH1 |
O3B O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p84077-f1 | 1 | P84077 | 100.0 | 4e-135 | ARG | A:99 | A:99 | 68.0 | 0.302 | T | -94.7 | 5.2 | |
af-p61204-f1 | 1 | P61204 | 96.13 | 2e-130 | ARG | A:99 | A:99 | 64.0 | 0.284 | T | -95.2 | 5.6 | |
af-p18085-f1 | 1 | P18085 | 81.92 | 1e-108 | ARG | A:99 | A:99 | 65.0 | 0.289 | S | -93.3 | 7.1 | |
af-p84085-f1 | 1 | P84085 | 81.92 | 1e-108 | ARG | A:99 | A:99 | 66.0 | 0.293 | T | -96.7 | 5.9 |