Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 228285328 . G A CCDS1565.1:NM_001024226.1:c.296cGt>cAt_NP_001019397.1:p.99R>H Homo sapiens ADP ribosylation factor 1 (ARF1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1r8q 1 P84080 100.0 9e-135 X-RAY
 2004-01-20 ARG A:99 A:99 69.0 0.307 G -114.2 7.4 69.0 0.307 0.0 G3D
HOH
 7.709
2.434
 NH1
NH2
 O3B
O
ARG C:99 B:99 73.0 0.324 G -110.8 6.5 NA NA NA
1rrf 1 P84079 100.0 9e-135 X-RAY
 1996-06-20 ARG A:99 A:99 49.0 0.218 H -82.4 -6.5 49.0 0.218 0.0 GDP
 8.359
 NH1
 O3B
1rrg 1 P84079 100.0 9e-135 X-RAY
 1996-06-20 ARG A:99 A:99 64.0 0.284 S -113.0 17.1 64.0 0.284 0.0 GDP
HOH
 8.348
3.355
 NH1
NH1
 O3B
O
ARG B:99 B:99 46.0 0.204 T -87.0 13.8 46.0 0.204 0.0 GDP
HOH
 8.177
3.506
 NH1
NH1
 O3B
O
1hur 1 P84077 100.0 9e-134 X-RAY
 1995-07-10 ARG A:98 A:99 79.0 0.351 T -96.2 22.4 79.0 0.351 0.0 GDP
HOH
 7.695
3.056
 NH2
NH1
 O2B
O
ARG B:98 B:99 61.0 0.271 G -122.7 13.2 61.0 0.271 0.0 GDP
HOH
 8.182
3.153
 NH1
NH1
 O2B
O
3o47 1 Q8N6T3,P84077 99.42 7e-125 X-RAY
 2010-08-11 ARG A:247 A:229 56.0 0.249 S -93.1 9.5 56.0 0.249 0.0 GDP
 7.683
 NH2
 O2B
ARG B:247 B:229 60.0 0.267 S -93.1 9.4 NA NA NA
7dn8 2 P84077 98.21 4e-122 X-RAY
 2021-12-15 ARG B:87 D:99 56.0 0.249 G -122.1 10.1 56.0 0.249 0.0 GDP
HOH
 8.256
3.340
 NH1
CD
 O3B
O
ARG D:87 B:99 56.0 0.249 G -122.7 10.4 NA NA NA
ARG F:87 F:99 55.0 0.244 G -122.4 10.0 NA NA NA
ARG H:87 H:99 57.0 0.253 G -122.8 10.2 NA NA NA
6cm9 3 P84077 96.53 6e-122 EM
 2018-08-08 ARG D:111 C:99 90.0 0.4 H -117.3 -10.9 90.0 0.4 0.0 GTP
 8.984
 NH2
 O2G
ARG F:111 H:99 59.0 0.262 T -113.6 -1.9 59.0 0.262 0.0 GTP
 8.805
 NH2
 O3G
6d83 3 P84077 96.53 6e-122 EM
 2018-08-08 ARG D:111 C:99 81.0 0.36 H -92.7 -6.0 81.0 0.36 0.0 GTP
 8.200
 NH2
 O3G
ARG F:111 H:99 58.0 0.258 G -119.1 9.3 58.0 0.258 0.0 GTP
 8.842
 NH2
 O3B
6d84 3 P84077 96.53 6e-122 EM
 2018-08-08 ARG D:111 C:99 88.0 0.391 H -97.3 -4.7 88.0 0.391 0.0 GTP
 8.657
 NH2
 O3G
ARG F:111 H:99 55.0 0.244 G -104.6 11.7 55.0 0.244 0.0 GTP
 8.666
 NH2
 O3B
ARG L:111 I:99 87.0 0.387 T -100.8 -2.3 87.0 0.387 0.0 GTP
 8.844
 NH2
 O1G
ARG N:111 N:99 59.0 0.262 G -125.6 6.3 59.0 0.262 0.0 GTP
 8.906
 NH2
 O1B
6dff 3 P84077 96.53 6e-122 EM
 2018-08-08 ARG D:111 C:99 87.0 0.387 H -111.2 -12.8 87.0 0.387 0.0 GTP
 8.623
 NH2
 O2G
ARG F:111 H:99 61.0 0.271 T -97.5 2.9 61.0 0.271 0.0 GTP
 8.517
 NH2
 O3G
7mge 4 P84077 100.0 1e-121 EM
 2021-06-23 ARG D:85 E:99 70.0 0.311 S 42.8 27.5 70.0 0.311 0.0 GDP
 9.255
 NH2
 O2B
1r8s 1 P84080 100.0 2e-121 X-RAY
 2004-01-20 ARG A:82 A:99 44.0 0.196 G -112.2 9.5 44.0 0.196 0.0 GDP
SO4
HOH
 7.931
8.854
3.107
 NH1
NH1
O
 O3B
O2
O
1re0 1 P32889 100.0 2e-121 X-RAY
 2003-12-16 ARG A:82 A:99 77.0 0.342 T -105.5 7.5 77.0 0.342 0.0 GDP
HOH
 7.530
3.631
 NH2
C
 O3B
O
1s9d 1 P84080 100.0 2e-121 X-RAY
 2004-02-10 ARG A:82 A:99 73.0 0.324 G -110.6 15.2 69.0 0.307 0.017 B:Q99418:0.018
 GDP
HOH
 7.828
2.985
 NH1
NH2
 O3B
O
1u81 1 P84077 100.0 2e-121 NMR
 2004-10-05 ARG A:82 A:99 76.0 0.338 S -104.8 6.9 76.0 0.338 0.0 GDP
 7.893
 HH22
 O3B
4c0a 2 P84080 100.0 2e-121 X-RAY
 2013-09-25 ARG C:82 C:99 57.0 0.253 T -107.3 6.9 NA NA NA
ARG D:82 D:99 58.0 0.258 T -108.3 6.5 NA NA NA
ARG G:82 G:99 58.0 0.258 T -107.6 6.4 58.0 0.258 0.0 G3D
 7.880
 NH1
 O3B
ARG H:82 H:99 56.0 0.249 T -108.4 6.6 NA NA NA
6fae 2 P84077 98.8 4e-121 X-RAY
 2018-01-17 ARG B:131 B:99 53.0 0.236 G -114.5 5.9 35.0 0.156 0.08 A:Q5JU85:0.08
 HOH
 3.417
 CA
 O
6cri 3 P84077 99.39 5e-121 EM
 2018-08-01 ARG C:83 C:99 84.0 0.373 H -115.0 -7.0 84.0 0.373 0.0 GTP
 8.918
 NH2
 O2G
ARG E:83 H:99 58.0 0.258 T -108.2 -0.1 58.0 0.258 0.0 GTP
 9.231
 NH2
 O3B
ARG K:83 K:99 86.0 0.382 H -120.8 -4.7 86.0 0.382 0.0 GTP
 9.197
 NH2
 O2G
ARG M:83 U:99 60.0 0.267 T -105.0 2.9 60.0 0.267 0.0 GTP
 9.284
 NH2
 O3G
ARG S:83 L:99 89.0 0.396 H -121.4 -4.8 89.0 0.396 0.0 GTP
 9.215
 NH2
 O2G
ARG U:83 V:99 58.0 0.258 T -99.1 1.9 58.0 0.258 0.0 GTP
 9.112
 NH2
 O3B
7dn9 2 P84077 99.39 5e-121 X-RAY
 2021-12-15 ARG B:83 B:99 57.0 0.253 G -120.9 7.1 57.0 0.253 0.0 GDP
 8.571
 NH1
 O2B
ARG D:83 D:99 57.0 0.253 G -120.5 6.5 NA NA NA
ARG F:83 F:99 56.0 0.249 G -120.5 6.8 NA NA NA
ARG H:83 H:99 55.0 0.244 G -120.5 6.5 NA NA NA
4hmy 5 P84077 99.39 6e-121 X-RAY
 2013-03-06 ARG E:90 C:99 60.0 0.267 G -102.8 8.3 60.0 0.267 0.0 GTP
 6.537
 NH2
 O1G
1j2j 1 Q8BSL7 99.39 4e-120 X-RAY
 2003-05-06 ARG A:84 A:99 53.0 0.236 G -116.3 13.4 53.0 0.236 0.0 GTP
HOH
 7.736
2.764
 NH2
NH1
 O1G
O
1o3y 1 P84078 99.39 4e-120 X-RAY
 2003-05-20 ARG A:84 A:99 54.0 0.24 G -109.0 7.5 54.0 0.24 0.0 GTP
HOH
 7.759
3.281
 NH2
NH2
 O1G
O
ARG B:84 B:99 58.0 0.258 G -113.1 17.4 NA NA NA
2j59 1 P84078 99.39 4e-120 X-RAY
 2007-02-20 ARG A:84 A:99 52.0 0.231 S -115.1 9.6 52.0 0.231 0.0 GTP
HOH
 7.632
2.735
 NH2
NH1
 O1G
O
ARG B:84 B:99 55.0 0.244 G -115.9 8.2 NA NA NA
ARG C:84 C:99 56.0 0.249 T -112.6 4.4 NA NA NA
ARG D:84 D:99 54.0 0.24 G -113.6 7.6 NA NA NA
ARG E:84 E:99 55.0 0.244 G -114.0 7.5 NA NA NA
ARG F:84 F:99 53.0 0.236 T -116.1 9.7 NA NA NA
6ii6 2 P61204 98.18 1e-119 X-RAY
 2019-08-07 ARG C:87 C:99 50.0 0.222 T -113.9 9.8 50.0 0.222 0.0 GTP
HOH
 7.806
2.970
 NH2
NH1
 O1G
O
ARG D:87 D:99 51.0 0.227 T -111.6 13.3 NA NA NA
3aq4 1 P36397 88.33 1e-116 X-RAY
 2011-01-26 ARG A:102 A:99 68.0 0.302 G -116.6 1.9 68.0 0.302 0.0 GDP
HOH
 7.672
3.341
 NH1
NH2
 O3B
O
ARG B:102 B:99 68.0 0.302 G -115.8 10.1 NA NA NA
5uf8 1 Q5AND9 85.08 1e-114 X-RAY
 2017-01-25 ARG A:99 A:99 58.0 0.258 G -121.3 13.7 58.0 0.258 0.0 GDP
HOH
 7.835
3.132
 NH2
O
 O1B
O
ARG B:99 B:99 52.0 0.231 G -117.4 13.5 NA NA NA
ARG C:99 C:99 59.0 0.262 G -119.0 15.2 NA NA NA
ARG D:99 D:99 70.0 0.311 G -117.0 15.6 NA NA NA
6pta 1 P22274 84.18 4e-112 X-RAY
 2019-07-24 ARG A:99 A:99 56.0 0.249 G -117.6 14.4 56.0 0.249 0.0 GDP
HOH
 8.217
3.229
 NH1
CD
 O2B
O
ARG B:99 B:99 57.0 0.253 G -118.6 15.4 NA NA NA
ARG C:99 C:99 56.0 0.249 T -113.5 11.5 56.0 0.249 0.0 GDP
HOH
 8.060
3.662
 NH1
NH1
 O2B
O
ARG D:99 D:99 60.0 0.267 S -115.1 9.5 NA NA NA
1z6x 1 P18085 81.92 2e-108 X-RAY
 2005-04-12 ARG A:99 A:99 53.0 0.236 G -101.0 14.0 53.0 0.236 0.0 GDP
HOH
 8.086
2.694
 NH2
NH2
 O3B
O
ARG B:99 B:99 65.0 0.289 T -76.2 10.8 NA NA NA
2b6h 1 P84085 83.14 9e-107 X-RAY
 2005-10-11 ARG A:111 A:99 60.0 0.267 G -107.3 8.0 60.0 0.267 0.0 GDP
UNX
UNX
HOH
 7.818
5.369
3.649
3.504
 NH1
O
C
CA
 O1B
UNK
UNK
O
4ylg 1 C4LXL1 80.12 6e-102 X-RAY
 2015-05-20 ARG A:95 A:95 57.0 0.253 G -112.5 14.3 57.0 0.253 0.0 GDP
HOH
 7.833
2.894
 NH1
NH2
 O3B
O
ARG B:95 B:95 56.0 0.249 T -114.1 -0.1 56.0 0.249 0.0 GDP
HOH
 7.463
2.949
 NH1
NH1
 O3B
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p84077-f1 1 P84077 100.0 4e-135 ARG A:99 A:99 68.0 0.302 T -94.7 5.2
af-p61204-f1 1 P61204 96.13 2e-130 ARG A:99 A:99 64.0 0.284 T -95.2 5.6
af-p18085-f1 1 P18085 81.92 1e-108 ARG A:99 A:99 65.0 0.289 S -93.3 7.1
af-p84085-f1 1 P84085 81.92 1e-108 ARG A:99 A:99 66.0 0.293 T -96.7 5.9