Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 228285411 . A C CCDS1565.1:NM_001024226.1:c.379Aag>Cag_NP_001019397.1:p.127K>Q Homo sapiens ADP ribosylation factor 1 (ARF1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1r8q 1 P84080 100.0 9e-135 X-RAY
 2004-01-20 LYS A:127 A:127 51.0 0.255 73.8 32.0 51.0 0.255 0.0 G3D
HOH
 3.246
3.015
 CA
NZ
 O6
O
LYS C:127 B:127 50.0 0.25 68.7 36.5 NA NA NA
1rrf 1 P84079 100.0 9e-135 X-RAY
 1996-06-20 LYS A:127 A:127 56.0 0.28 -78.7 64.5 56.0 0.28 0.0 GDP
 3.466
 CG
 C6
1rrg 1 P84079 100.0 9e-135 X-RAY
 1996-06-20 LYS A:127 A:127 51.0 0.255 65.5 33.3 51.0 0.255 0.0 GDP
HOH
 3.064
2.947
 NZ
NZ
 O4'
O
LYS B:127 B:127 53.0 0.265 62.9 29.3 53.0 0.265 0.0 GDP
HOH
 3.204
3.220
 NZ
NZ
 O4'
O
1hur 1 P84077 100.0 9e-134 X-RAY
 1995-07-10 LYS A:126 A:127 54.0 0.27 63.5 47.5 54.0 0.27 0.0 GDP
HOH
 3.142
4.416
 N
NZ
 O6
O
LYS B:126 B:127 55.0 0.275 70.4 41.2 55.0 0.275 0.0 GDP
HOH
 3.074
3.004
 NZ
NZ
 O4'
O
3o47 1 Q8N6T3,P84077 99.42 7e-125 X-RAY
 2010-08-11 LYS A:275 A:257 51.0 0.255 78.5 30.2 51.0 0.255 0.0 GDP
 3.335
 CE
 O4'
LYS B:275 B:257 55.0 0.275 62.4 37.7 NA NA NA
7dn8 2 P84077 98.21 4e-122 X-RAY
 2021-12-15 LYS B:115 D:127 54.0 0.27 65.9 39.8 54.0 0.27 0.0 GDP
HOH
 3.315
3.003
 NZ
NZ
 O4'
O
LYS D:115 B:127 51.0 0.255 66.0 39.5 NA NA NA
LYS F:115 F:127 50.0 0.25 65.9 39.4 NA NA NA
LYS H:115 H:127 52.0 0.26 65.9 39.5 NA NA NA
6cm9 3 P84077 96.53 6e-122 EM
 2018-08-08 LYS D:139 C:127 71.0 0.355 58.8 59.9 71.0 0.355 0.0 GTP
 3.367
 CG
 N7
LYS F:139 H:127 72.0 0.36 62.0 62.3 72.0 0.36 0.0 GTP
 3.437
 CG
 C5
6d83 3 P84077 96.53 6e-122 EM
 2018-08-08 LYS D:139 C:127 75.0 0.375 60.6 47.7 75.0 0.375 0.0 GTP
 3.348
 CG
 N7
LYS F:139 H:127 75.0 0.375 63.7 60.8 75.0 0.375 0.0 GTP
 3.433
 CG
 C5
6d84 3 P84077 96.53 6e-122 EM
 2018-08-08 LYS D:139 C:127 74.0 0.37 57.5 49.9 74.0 0.37 0.0 GTP
 3.330
 CG
 N7
LYS F:139 H:127 73.0 0.365 64.1 56.7 73.0 0.365 0.0 GTP
 3.423
 CG
 C5
LYS L:139 I:127 72.0 0.36 57.0 45.5 72.0 0.36 0.0 GTP
 3.511
 CG
 C5
LYS N:139 N:127 76.0 0.38 61.3 64.2 76.0 0.38 0.0 GTP
 3.472
 CG
 C5
6dff 3 P84077 96.53 6e-122 EM
 2018-08-08 LYS D:139 C:127 71.0 0.355 59.4 49.9 71.0 0.355 0.0 GTP
 3.383
 CG
 N7
LYS F:139 H:127 73.0 0.365 62.5 62.5 73.0 0.365 0.0 GTP
 3.465
 CA
 N1
7mge 4 P84077 100.0 1e-121 EM
 2021-06-23 LYS D:113 E:127 50.0 0.25 59.9 66.1 50.0 0.25 0.0 GDP
MG
 3.076
9.528
 NZ
NZ
 N9
MG
1r8s 1 P84080 100.0 2e-121 X-RAY
 2004-01-20 LYS A:110 A:127 51.0 0.255 68.6 33.6 51.0 0.255 0.0 GDP
HOH
 3.221
2.959
 NZ
NZ
 O4'
O
1re0 1 P32889 100.0 2e-121 X-RAY
 2003-12-16 LYS A:110 A:127 53.0 0.265 66.1 31.7 53.0 0.265 0.0 GDP
HOH
 3.268
2.914
 NZ
NZ
 O4'
O
1s9d 1 P84080 100.0 2e-121 X-RAY
 2004-02-10 LYS A:110 A:127 53.0 0.265 68.4 37.4 53.0 0.265 0.0 GDP
HOH
 3.197
2.897
 NZ
NZ
 O4'
O
1u81 1 P84077 100.0 2e-121 NMR
 2004-10-05 LYS A:110 A:127 46.0 0.23 S 81.9 25.4 46.0 0.23 0.0 GDP
 3.483
 CG
 O6
4c0a 2 P84080 100.0 2e-121 X-RAY
 2013-09-25 LYS C:110 C:127 53.0 0.265 68.3 35.8 NA NA NA
LYS D:110 D:127 51.0 0.255 69.1 36.2 NA NA NA
LYS G:110 G:127 52.0 0.26 68.7 36.1 52.0 0.26 0.0 G3D
 3.194
 NZ
 O4'
LYS H:110 H:127 53.0 0.265 68.7 36.2 NA NA NA
6fae 2 P84077 98.8 4e-121 X-RAY
 2018-01-17 LYS B:159 B:127 80.0 0.4 71.7 45.9 80.0 0.4 0.0 HOH
 4.493
 NZ
 O
6cri 3 P84077 99.39 5e-121 EM
 2018-08-01 LYS C:111 C:127 70.0 0.35 59.6 50.3 70.0 0.35 0.0 GTP
 3.324
 CG
 N7
LYS E:111 H:127 73.0 0.365 63.7 57.2 73.0 0.365 0.0 GTP
 3.343
 CG
 C5
LYS K:111 K:127 69.0 0.345 57.4 52.5 69.0 0.345 0.0 GTP
 3.371
 CG
 N7
LYS M:111 U:127 74.0 0.37 62.5 53.8 74.0 0.37 0.0 GTP
 3.364
 CG
 C5
LYS S:111 L:127 68.0 0.34 59.6 55.7 68.0 0.34 0.0 GTP
 3.376
 CG
 N7
LYS U:111 V:127 71.0 0.355 63.0 50.7 71.0 0.355 0.0 GTP
 3.380
 CG
 C5
7dn9 2 P84077 99.39 5e-121 X-RAY
 2021-12-15 LYS B:111 B:127 58.0 0.29 61.4 47.5 58.0 0.29 0.0 GDP
 3.440
 CG
 C6
LYS D:111 D:127 57.0 0.285 61.6 46.9 NA NA NA
LYS F:111 F:127 57.0 0.285 61.3 46.8 NA NA NA
LYS H:111 H:127 58.0 0.29 61.9 47.8 NA NA NA
4hmy 5 P84077 99.39 6e-121 X-RAY
 2013-03-06 LYS E:118 C:127 57.0 0.285 65.7 44.5 57.0 0.285 0.0 GTP
MG
 3.444
9.905
 CA
NZ
 O6
MG
1j2j 1 Q8BSL7 99.39 4e-120 X-RAY
 2003-05-06 LYS A:112 A:127 52.0 0.26 66.6 37.8 52.0 0.26 0.0 GTP
HOH
 3.227
2.926
 NZ
NZ
 O4'
O
1o3y 1 P84078 99.39 4e-120 X-RAY
 2003-05-20 LYS A:112 A:127 52.0 0.26 69.1 34.9 52.0 0.26 0.0 GTP
HOH
 3.348
2.867
 CA
NZ
 O6
O
LYS B:112 B:127 51.0 0.255 68.6 34.4 NA NA NA
2j59 1 P84078 99.39 4e-120 X-RAY
 2007-02-20 LYS A:112 A:127 49.0 0.245 64.6 37.2 49.0 0.245 0.0 GTP
HOH
 3.247
2.747
 NZ
NZ
 O4'
O
LYS B:112 B:127 49.0 0.245 72.8 35.9 NA NA NA
LYS C:112 C:127 50.0 0.25 67.5 36.6 NA NA NA
LYS D:112 D:127 49.0 0.245 66.6 42.0 NA NA NA
LYS E:112 E:127 53.0 0.265 68.9 37.3 NA NA NA
LYS F:112 F:127 50.0 0.25 68.8 37.1 NA NA NA
6ii6 2 P61204 98.18 1e-119 X-RAY
 2019-08-07 LYS C:115 C:127 50.0 0.25 67.5 33.9 50.0 0.25 0.0 GTP
HOH
 3.398
2.768
 CA
NZ
 O6
O
LYS D:115 D:127 57.0 0.285 66.2 42.0 NA NA NA
3aq4 1 P36397 88.33 1e-116 X-RAY
 2011-01-26 LYS A:130 A:127 53.0 0.265 70.4 35.5 53.0 0.265 0.0 GDP
HOH
 3.149
2.759
 NZ
NZ
 O4'
O
LYS B:130 B:127 51.0 0.255 68.6 35.7 NA NA NA
5uf8 1 Q5AND9 85.08 1e-114 X-RAY
 2017-01-25 LYS A:127 A:127 53.0 0.265 63.5 41.8 53.0 0.265 0.0 GDP
HOH
 3.216
2.827
 N
NZ
 O6
O
LYS B:127 B:127 53.0 0.265 67.1 37.5 NA NA NA
LYS C:127 C:127 53.0 0.265 67.6 35.6 NA NA NA
LYS D:127 D:127 57.0 0.285 68.3 39.1 NA NA NA
6pta 1 P22274 84.18 4e-112 X-RAY
 2019-07-24 LYS A:127 A:127 48.0 0.24 64.3 38.7 48.0 0.24 0.0 GDP
HOH
 3.425
3.971
 CG
NZ
 C6
O
LYS B:127 B:127 45.0 0.225 62.4 35.1 NA NA NA
LYS C:127 C:127 56.0 0.28 60.0 41.7 56.0 0.28 0.0 GDP
HOH
 3.285
3.224
 N
NZ
 O6
O
LYS D:127 D:127 54.0 0.27 61.8 42.3 NA NA NA
1z6x 1 P18085 81.92 2e-108 X-RAY
 2005-04-12 LYS A:127 A:127 50.0 0.25 71.2 39.5 50.0 0.25 0.0 GDP
HOH
 3.375
6.286
 CG
NZ
 N1
O
LYS B:127 B:127 57.0 0.285 64.5 34.5 NA NA NA
2b6h 1 P84085 83.14 9e-107 X-RAY
 2005-10-11 LYS A:139 A:127 59.0 0.295 66.7 31.7 59.0 0.295 0.0 GDP
UNX
UNX
HOH
 2.987
6.994
8.196
2.946
 NZ
CE
CE
NZ
 O4'
UNK
UNK
O
4ylg 1 C4LXL1 80.12 6e-102 X-RAY
 2015-05-20 LYS A:123 A:123 52.0 0.26 62.2 40.9 52.0 0.26 0.0 GDP
HOH
 3.115
2.927
 N
NZ
 O6
O
LYS B:123 B:123 55.0 0.275 62.6 34.4 55.0 0.275 0.0 GDP
HOH
 3.315
3.015
 N
NZ
 O6
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p84077-f1 1 P84077 100.0 4e-135 LYS A:127 A:127 46.0 0.23 67.8 38.2
af-p61204-f1 1 P61204 96.13 2e-130 LYS A:127 A:127 48.0 0.24 68.7 37.2
af-p18085-f1 1 P18085 81.92 1e-108 LYS A:127 A:127 52.0 0.26 64.7 35.3
af-p84085-f1 1 P84085 81.92 1e-108 LYS A:127 A:127 53.0 0.265 65.1 36.1