Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 228285560 . C A CCDS1565.1:NM_001024226.1:c.392cCc>cAc_NP_001019397.1:p.131P>H Homo sapiens ADP ribosylation factor 1 (ARF1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1r8q 1 P84080 100.0 9e-135 X-RAY
 2004-01-20 PRO A:131 A:131 128.0 0.883 T -63.8 -26.2 128.0 0.883 0.0 G3D
HOH
 7.603
2.973
 CD
O
 N2
O
PRO C:131 B:131 133.0 0.917 T -62.1 -34.0 NA NA NA
1rrf 1 P84079 100.0 9e-135 X-RAY
 1996-06-20 PRO A:131 A:131 134.0 0.924 S -48.7 -39.5 134.0 0.924 0.0 GDP
 8.410
 N
 N2
1rrg 1 P84079 100.0 9e-135 X-RAY
 1996-06-20 PRO A:131 A:131 119.0 0.821 T -38.5 -49.7 119.0 0.821 0.0 GDP
HOH
 7.172
3.410
 CD
O
 N2
O
PRO B:131 B:131 137.0 0.945 T -43.0 -46.3 137.0 0.945 0.0 GDP
HOH
 8.052
3.584
 CD
CD
 N2
O
1hur 1 P84077 100.0 9e-134 X-RAY
 1995-07-10 PRO A:130 A:131 128.0 0.883 T -74.4 -38.2 128.0 0.883 0.0 GDP
HOH
 7.063
3.495
 CD
CD
 N2
O
PRO B:130 B:131 128.0 0.883 T -56.7 -39.6 128.0 0.883 0.0 GDP
HOH
 7.780
3.276
 CD
CD
 N2
O
3o47 1 Q8N6T3,P84077 99.42 7e-125 X-RAY
 2010-08-11 PRO A:279 A:261 134.0 0.924 T -65.6 -49.9 134.0 0.924 0.0 GDP
 7.519
 CD
 N2
PRO B:279 B:261 114.0 0.786 T -66.4 -48.3 NA NA NA
7dn8 2 P84077 98.21 4e-122 X-RAY
 2021-12-15 PRO B:119 D:131 135.0 0.931 T -64.8 -33.6 135.0 0.931 0.0 GDP
HOH
 7.593
2.336
 CD
O
 N2
O
PRO D:119 B:131 136.0 0.938 T -64.9 -34.1 NA NA NA
PRO F:119 F:131 137.0 0.945 T -64.1 -32.5 NA NA NA
PRO H:119 H:131 136.0 0.938 T -65.0 -34.3 NA NA NA
6cm9 3 P84077 96.53 6e-122 EM
 2018-08-08 PRO D:143 C:131 126.0 0.869 T -72.8 -10.7 126.0 0.869 0.0 GTP
 9.407
 CD
 N2
PRO F:143 H:131 136.0 0.938 T -68.6 -13.2 136.0 0.938 0.0
6d83 3 P84077 96.53 6e-122 EM
 2018-08-08 PRO D:143 C:131 124.0 0.855 T -70.9 -14.5 124.0 0.855 0.0 GTP
 9.531
 CD
 N2
PRO F:143 H:131 130.0 0.897 T -68.2 -12.7 130.0 0.897 0.0
6d84 3 P84077 96.53 6e-122 EM
 2018-08-08 PRO D:143 C:131 120.0 0.828 T -70.1 -17.1 120.0 0.828 0.0
PRO F:143 H:131 134.0 0.924 T -68.8 -14.8 134.0 0.924 0.0
PRO L:143 I:131 122.0 0.841 T -70.2 -10.5 122.0 0.841 0.0 GTP
 8.523
 CD
 N2
PRO N:143 N:131 132.0 0.91 T -68.3 -7.1 132.0 0.91 0.0
6dff 3 P84077 96.53 6e-122 EM
 2018-08-08 PRO D:143 C:131 122.0 0.841 T -71.1 -20.4 122.0 0.841 0.0 GTP
 9.574
 CD
 N2
PRO F:143 H:131 136.0 0.938 T -71.3 -15.0 136.0 0.938 0.0
7mge 4 P84077 100.0 1e-121 EM
 2021-06-23 PRO D:117 E:131 125.0 0.862 T -66.2 -3.9 125.0 0.862 0.0
1r8s 1 P84080 100.0 2e-121 X-RAY
 2004-01-20 PRO A:114 A:131 134.0 0.924 T -60.1 -33.7 134.0 0.924 0.0 GDP
HOH
 7.386
3.404
 CD
CD
 N2
O
1re0 1 P32889 100.0 2e-121 X-RAY
 2003-12-16 PRO A:114 A:131 118.0 0.814 T -42.9 -51.4 118.0 0.814 0.0 GDP
HOH
 7.290
9.478
 CD
CD
 N2
O
1s9d 1 P84080 100.0 2e-121 X-RAY
 2004-02-10 PRO A:114 A:131 139.0 0.959 T -49.8 -40.0 139.0 0.959 0.0 GDP
HOH
 7.368
3.839
 CD
CD
 N2
O
1u81 1 P84077 100.0 2e-121 NMR
 2004-10-05 PRO A:114 A:131 132.0 0.91 S -52.4 -33.1 132.0 0.91 0.0 GDP
 7.942
 CD
 N2
4c0a 2 P84080 100.0 2e-121 X-RAY
 2013-09-25 PRO C:114 C:131 124.0 0.855 T -59.8 -31.3 NA NA NA
PRO D:114 D:131 123.0 0.848 T -60.5 -29.7 NA NA NA
PRO G:114 G:131 124.0 0.855 T -60.1 -30.2 124.0 0.855 0.0 G3D
 8.200
 CD
 N2
PRO H:114 H:131 123.0 0.848 T -59.9 -30.1 NA NA NA
6fae 2 P84077 98.8 4e-121 X-RAY
 2018-01-17 PRO B:163 NA:NA DO NA DO DO DO NA NA NA
6cri 3 P84077 99.39 5e-121 EM
 2018-08-01 PRO C:115 C:131 123.0 0.848 T -71.5 -10.5 123.0 0.848 0.0 GTP
 8.951
 CD
 N2
PRO E:115 H:131 133.0 0.917 S -70.6 -15.9 133.0 0.917 0.0
PRO K:115 K:131 123.0 0.848 T -72.8 -10.8 123.0 0.848 0.0 GTP
 8.979
 CD
 N2
PRO M:115 U:131 133.0 0.917 S -66.2 -20.0 133.0 0.917 0.0
PRO S:115 L:131 123.0 0.848 T -73.0 -10.7 123.0 0.848 0.0 GTP
 9.077
 CD
 N2
PRO U:115 V:131 138.0 0.952 S -66.9 -21.0 138.0 0.952 0.0
7dn9 2 P84077 99.39 5e-121 X-RAY
 2021-12-15 PRO B:115 B:131 136.0 0.938 T -68.5 -35.9 136.0 0.938 0.0 GDP
 7.979
 CD
 N2
PRO D:115 D:131 135.0 0.931 T -68.4 -36.2 NA NA NA
PRO F:115 F:131 136.0 0.938 T -68.5 -36.1 NA NA NA
PRO H:115 H:131 137.0 0.945 T -68.8 -36.3 NA NA NA
4hmy 5 P84077 99.39 6e-121 X-RAY
 2013-03-06 PRO E:122 C:131 123.0 0.848 T -60.5 -15.9 123.0 0.848 0.0 GTP
 9.762
 CD
 N2
1j2j 1 Q8BSL7 99.39 4e-120 X-RAY
 2003-05-06 PRO A:116 A:131 134.0 0.924 T -44.2 -55.8 134.0 0.924 0.0 GTP
HOH
 7.303
3.518
 CD
CD
 N2
O
1o3y 1 P84078 99.39 4e-120 X-RAY
 2003-05-20 PRO A:116 A:131 119.0 0.821 T -62.7 -29.4 119.0 0.821 0.0 GTP
HOH
 7.769
3.326
 CD
CD
 N2
O
PRO B:116 B:131 125.0 0.862 T -61.2 -27.3 NA NA NA
2j59 1 P84078 99.39 4e-120 X-RAY
 2007-02-20 PRO A:116 A:131 108.0 0.745 T -54.7 134.3 108.0 0.745 0.0 GTP
HOH
 7.356
2.707
 CD
O
 N2
O
PRO B:116 B:131 107.0 0.738 T -51.3 131.3 NA NA NA
PRO C:116 C:131 108.0 0.745 T -51.1 132.7 NA NA NA
PRO D:116 D:131 108.0 0.745 T -51.9 135.6 NA NA NA
PRO E:116 E:131 104.0 0.717 T -45.2 129.4 NA NA NA
PRO F:116 F:131 108.0 0.745 T -53.4 137.5 NA NA NA
6ii6 2 P61204 98.18 1e-119 X-RAY
 2019-08-07 PRO C:119 C:131 133.0 0.917 T -66.2 -33.0 133.0 0.917 0.0 GTP
HOH
 7.571
7.782
 CD
CD
 N2
O
PRO D:119 D:131 137.0 0.945 T -52.0 -42.6 NA NA NA
3aq4 1 P36397 88.33 1e-116 X-RAY
 2011-01-26 PRO A:134 A:131 122.0 0.841 T -59.8 -40.0 122.0 0.841 0.0 GDP
HOH
 7.446
3.729
 CD
CD
 N2
O
PRO B:134 B:131 123.0 0.848 T -66.3 -27.3 NA NA NA
5uf8 1 Q5AND9 85.08 1e-114 X-RAY
 2017-01-25 PRO A:131 A:131 120.0 0.828 T -64.3 -34.3 120.0 0.828 0.0 GDP
HOH
 7.635
3.286
 CD
CD
 N2
O
PRO B:131 B:131 128.0 0.883 T -68.5 -30.2 NA NA NA
PRO C:131 C:131 127.0 0.876 T -63.5 -34.2 NA NA NA
PRO D:131 D:131 123.0 0.848 T -69.6 -35.1 NA NA NA
6pta 1 P22274 84.18 4e-112 X-RAY
 2019-07-24 PRO A:131 A:131 116.0 0.8 T -67.8 -38.7 116.0 0.8 0.0 GDP
HOH
 7.569
7.163
 CD
O
 N2
O
PRO B:131 B:131 118.0 0.814 T -65.9 -34.7 NA NA NA
PRO C:131 C:131 137.0 0.945 T -65.5 -37.2 137.0 0.945 0.0 GDP
HOH
 7.962
6.402
 CD
CA
 N2
O
PRO D:131 D:131 135.0 0.931 T -65.5 -37.2 NA NA NA
1z6x 1 P18085 81.92 2e-108 X-RAY
 2005-04-12 PRO A:131 A:131 117.0 0.807 T -59.4 -54.4 117.0 0.807 0.0 GDP
 7.406
 CD
 N2
PRO B:131 B:131 140.0 0.966 T -51.9 -39.8 NA NA NA
2b6h 1 P84085 83.14 9e-107 X-RAY
 2005-10-11 PRO A:143 A:131 130.0 0.897 T -54.4 -40.9 130.0 0.897 0.0 GDP
HOH
 7.339
3.335
 CD
CD
 N2
O
4ylg 1 C4LXL1 80.12 6e-102 X-RAY
 2015-05-20 PRO A:127 A:127 115.0 0.793 T -58.3 -29.1 115.0 0.793 0.0 GDP
HOH
 7.378
3.502
 CD
CG
 N2
O
PRO B:127 B:127 115.0 0.793 T -63.7 -23.7 115.0 0.793 0.0 GDP
HOH
 7.497
2.702
 CD
O
 N2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p84077-f1 1 P84077 100.0 4e-135 PRO A:131 A:131 121.0 0.834 T -66.1 -23.7
af-p61204-f1 1 P61204 96.13 2e-130 PRO A:131 A:131 121.0 0.834 T -66.9 -24.2
af-p18085-f1 1 P18085 81.92 1e-108 PRO A:131 A:131 122.0 0.841 T -65.4 -26.4
af-p84085-f1 1 P84085 81.92 1e-108 PRO A:131 A:131 117.0 0.807 T -65.1 -28.7