Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 229422235 . T A CCDS31050.1:NM_004578.3:c.34Ttt>Att_NP_004569.2:p.12F>I Homo sapiens RAB4A, member RAS oncogene family (RAB4A), transcript variant 1, mRNA.
pdb_id: 
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label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2bmd 1 P20338 100.0 1e-136 X-RAY
 2005-04-25 PHE A:9 A:9 40.0 0.19 E -139.4 148.9 40.0 0.19 0.0 HOH
 3.276
 CZ
 O
2bme 1 P20338 100.0 1e-136 X-RAY
 2005-04-25 PHE A:9 A:9 54.0 0.257 E -139.3 145.0 54.0 0.257 0.0 TRS
HOH
 9.113
3.758
 O
CD1
 O2
O
PHE B:9 B:9 55.0 0.262 E -139.1 151.3 NA NA NA
PHE C:9 C:9 56.0 0.267 E -135.9 148.3 NA NA NA
PHE D:9 D:9 60.0 0.286 E -140.8 149.4 NA NA NA
1yu9 1 P20338 99.42 1e-124 X-RAY
 2005-07-26 PHE A:10 A:7 75.0 0.357 E -135.2 145.0 75.0 0.357 0.0 HOH
 5.333
 CE1
 O
1z0k 1 P20338 98.83 8e-124 X-RAY
 2005-07-26 PHE A:7 A:7 77.0 0.367 E -134.6 157.5 77.0 0.367 0.0 HOH
 5.598
 C
 O
PHE C:7 C:7 95.0 0.452 E -141.8 152.6 NA NA NA
2o52 1 P61018 89.33 4e-118 X-RAY
 2006-12-19 PHE A:24 A:7 37.0 0.176 E -137.4 145.4 37.0 0.176 0.0 HOH
 5.575
 O
 O
PHE B:24 B:7 67.0 0.319 E -144.7 157.3 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p20338-f1 1 P20338 100.0 2e-165 PHE A:12 A:12 19.0 0.09 E -138.9 146.4
af-p61018-f1 1 P61018 87.32 1e-141 PHE A:7 A:7 17.0 0.081 E -137.3 150.0