Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 229422269 . G A CCDS31050.1:NM_004578.3:c.68gGa>gAa_NP_004569.2:p.23G>E Homo sapiens RAB4A, member RAS oncogene family (RAB4A), transcript variant 1, mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2bmd 1 P20338 100.0 1e-136 X-RAY
 2005-04-25 GLY A:20 A:20 60.0 0.8 T 82.8 3.9 60.0 0.8 0.0 GDP
HOH
 2.897
3.042
 N
O
 O3B
O
2bme 1 P20338 100.0 1e-136 X-RAY
 2005-04-25 GLY A:20 A:20 39.0 0.52 T 89.8 -2.1 39.0 0.52 0.0 GNP
MG
HOH
 3.040
6.427
3.553
 N
N
O
 N3B
MG
O
GLY B:20 B:20 41.0 0.547 T 81.0 6.1 NA NA NA
GLY C:20 C:20 40.0 0.533 T 78.9 8.0 NA NA NA
GLY D:20 D:20 43.0 0.573 T 81.7 4.4 NA NA NA
1yu9 1 P20338 99.42 1e-124 X-RAY
 2005-07-26 GLY A:21 A:18 40.0 0.533 T 83.6 7.6 40.0 0.533 0.0 MG
SO4
GNP
HOH
 6.421
9.360
3.071
3.212
 N
N
N
O
 MG
O2
N3B
O
1z0k 1 P20338 98.83 8e-124 X-RAY
 2005-07-26 GLY A:18 A:18 55.0 0.733 T 81.7 -4.4 55.0 0.733 0.0 MG
GTP
HOH
 6.156
2.943
3.484
 N
N
O
 MG
O3B
O
GLY C:18 C:18 36.0 0.48 T 80.8 10.2 NA NA NA
2o52 1 P61018 89.33 4e-118 X-RAY
 2006-12-19 GLY A:35 A:18 56.0 0.747 T 81.1 15.0 56.0 0.747 0.0 MG
GDP
HOH
 6.301
2.911
5.014
 N
N
N
 MG
O3B
O
GLY B:35 B:18 45.0 0.6 T 80.9 5.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p20338-f1 1 P20338 100.0 2e-165 GLY A:23 A:23 37.0 0.493 T 77.7 -5.9
af-p61018-f1 1 P61018 87.32 1e-141 GLY A:18 A:18 39.0 0.52 T 78.2 -5.8