Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 229424488 . C A CCDS31050.1:NM_004578.3:c.125tCa>tAa_NP_004569.2:p.42S>* Homo sapiens RAB4A, member RAS oncogene family (RAB4A), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2bmd 1 P20338 100.0 1e-136 X-RAY
 2005-04-25 SER A:39 NA:NA DO NA DO DO DO NA NA NA
2bme 1 P20338 100.0 1e-136 X-RAY
 2005-04-25 SER A:39 A:39 46.0 0.4 -75.5 125.0 46.0 0.4 0.0 GNP
MG
HOH
 2.714
5.297
2.909
 OG
OG
N
 O2A
MG
O
SER B:39 B:39 48.0 0.417 -62.4 131.0 NA NA NA
SER C:39 C:39 57.0 0.496 -62.4 146.7 NA NA NA
SER D:39 D:39 45.0 0.391 -60.2 131.9 NA NA NA
1yu9 1 P20338 99.42 1e-124 X-RAY
 2005-07-26 SER A:40 A:37 50.0 0.435 -66.6 122.4 50.0 0.435 0.0 MG
GNP
HOH
 5.402
2.697
2.987
 OG
OG
OG
 MG
O2A
O
1z0k 1 P20338 98.83 8e-124 X-RAY
 2005-07-26 SER A:37 A:37 61.0 0.53 -117.9 140.5 61.0 0.53 0.0 MG
GTP
HOH
 6.123
2.892
2.608
 OG
OG
O
 MG
O2A
O
SER C:37 C:37 49.0 0.426 -73.8 118.3 NA NA NA
2o52 1 P61018 89.33 4e-118 X-RAY
 2006-12-19 SER A:54 NA:NA DO NA DO DO DO NA NA NA
SER B:54 NA:NA DO NA DO DO DO NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p20338-f1 1 P20338 100.0 2e-165 SER A:42 A:42 113.0 0.983 -78.7 -10.7
af-p61018-f1 1 P61018 87.32 1e-141 SER A:37 A:37 61.0 0.53 -102.4 100.5