Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 229431617 . C A CCDS31050.1:NM_004578.3:c.250Cga>Aga_NP_004569.2:p.84R>R Homo sapiens RAB4A, member RAS oncogene family (RAB4A), transcript variant 1, mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2bmd 1 P20338 100.0 1e-136 X-RAY
 2005-04-25 ARG A:81 A:81 135.0 0.6 T -57.9 134.1 135.0 0.6 0.0 HOH
 2.765
 NE
 O
2bme 1 P20338 100.0 1e-136 X-RAY
 2005-04-25 ARG A:81 A:81 215.0 0.956 T -58.9 126.0 215.0 0.956 0.0 HOH
 2.737
 O
 O
ARG B:81 B:81 215.0 0.956 T -60.7 123.7 NA NA NA
ARG C:81 C:81 210.0 0.933 T -55.2 129.0 NA NA NA
ARG D:81 D:81 190.0 0.844 T -62.3 132.9 NA NA NA
1yu9 1 P20338 99.42 1e-124 X-RAY
 2005-07-26 ARG A:82 A:79 174.0 0.773 T -79.1 121.8 174.0 0.773 0.0 HOH
 2.745
 NH2
 O
1z0k 1 P20338 98.83 8e-124 X-RAY
 2005-07-26 ARG A:79 A:79 63.0 NA T -56.2 131.8 63.0 NA NA HOH
 2.911
 N
 O
ARG C:79 C:79 160.0 0.711 T -45.0 127.0 NA NA NA
2o52 1 P61018 89.33 4e-118 X-RAY
 2006-12-19 ARG A:96 A:79 195.0 0.867 T -57.6 132.1 195.0 0.867 0.0 UNX
HOH
 3.795
3.436
 NE
NH2
 UNK
O
ARG B:96 B:79 177.0 0.787 T -52.1 129.3 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p20338-f1 1 P20338 100.0 2e-165 ARG A:84 A:84 205.0 0.911 T -52.6 121.6
af-p61018-f1 1 P61018 87.32 1e-141 ARG A:79 A:79 196.0 0.871 T -51.0 120.8