Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 229431641 . G A CCDS31050.1:NM_004578.3:c.274Gtc>Atc_NP_004569.2:p.92V>I Homo sapiens RAB4A, member RAS oncogene family (RAB4A), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2bmd 1 P20338 100.0 1e-136 X-RAY
 2005-04-25 VAL A:89 A:89 0.0 0.0 E -105.0 129.9 0.0 0.0 0.0 GDP
GOL
HOH
 6.278
9.880
2.740
 CG1
O
O
 O1B
C1
O
2bme 1 P20338 100.0 1e-136 X-RAY
 2005-04-25 VAL A:89 A:89 0.0 0.0 E -116.0 137.0 0.0 0.0 0.0 GNP
MG
HOH
 6.224
9.783
2.834
 CG1
CG1
O
 O1B
MG
O
VAL B:89 B:89 0.0 0.0 E -113.5 140.0 NA NA NA
VAL C:89 C:89 0.0 0.0 E -114.7 135.8 NA NA NA
VAL D:89 D:89 0.0 0.0 E -114.4 137.6 NA NA NA
1yu9 1 P20338 99.42 1e-124 X-RAY
 2005-07-26 VAL A:90 A:87 0.0 0.0 E -111.7 137.4 0.0 0.0 0.0 MG
GNP
HOH
 9.722
6.235
2.649
 CG1
CG1
O
 MG
O1B
O
1z0k 1 P20338 98.83 8e-124 X-RAY
 2005-07-26 VAL A:87 A:87 0.0 0.0 E -110.1 136.5 0.0 0.0 0.0 MG
GTP
HOH
 9.528
6.318
2.785
 CB
CG1
O
 MG
O1B
O
VAL C:87 C:87 0.0 0.0 E -114.4 134.1 NA NA NA
2o52 1 P61018 89.33 4e-118 X-RAY
 2006-12-19 VAL A:104 A:87 0.0 0.0 E -112.6 134.5 0.0 0.0 0.0 MG
GDP
HOH
 9.654
6.170
2.788
 CG1
CG1
O
 MG
O1B
O
VAL B:104 B:87 0.0 0.0 E -120.7 139.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p20338-f1 1 P20338 100.0 2e-165 VAL A:92 A:92 0.0 0.0 E -113.4 129.8
af-p61018-f1 1 P61018 87.32 1e-141 VAL A:87 A:87 0.0 0.0 E -110.6 129.1