Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 229431647 . G A CCDS31050.1:NM_004578.3:c.280Gat>Aat_NP_004569.2:p.94D>N Homo sapiens RAB4A, member RAS oncogene family (RAB4A), transcript variant 1, mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2bmd 1 P20338 100.0 1e-136 X-RAY
 2005-04-25 ASP A:91 A:91 10.0 0.067 E -115.8 120.7 10.0 0.067 0.0 GDP
HOH
 5.993
4.113
 OD2
OD2
 O4'
O
2bme 1 P20338 100.0 1e-136 X-RAY
 2005-04-25 ASP A:91 A:91 11.0 0.073 E -108.3 120.3 11.0 0.073 0.0 GNP
HOH
 6.180
2.829
 OD2
OD2
 O4'
O
ASP B:91 B:91 12.0 0.08 E -102.9 122.1 NA NA NA
ASP C:91 C:91 11.0 0.073 E -106.5 123.2 NA NA NA
ASP D:91 D:91 13.0 0.087 E -109.2 117.8 NA NA NA
1yu9 1 P20338 99.42 1e-124 X-RAY
 2005-07-26 ASP A:92 A:89 9.0 0.06 E -113.1 117.4 9.0 0.06 0.0 GNP
HOH
 6.317
2.543
 OD2
OD2
 O4'
O
1z0k 1 P20338 98.83 8e-124 X-RAY
 2005-07-26 ASP A:89 A:89 11.0 0.073 E -106.8 122.1 11.0 0.073 0.0 GTP
HOH
 6.193
2.783
 OD2
OD2
 O4'
O
ASP C:89 C:89 11.0 0.073 E -103.4 121.4 NA NA NA
2o52 1 P61018 89.33 4e-118 X-RAY
 2006-12-19 ASP A:106 A:89 12.0 0.08 E -102.9 123.8 12.0 0.08 0.0 GDP
HOH
 6.408
5.382
 OD2
N
 O4'
O
ASP B:106 B:89 12.0 0.08 E -105.9 122.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p20338-f1 1 P20338 100.0 2e-165 ASP A:94 A:94 9.0 0.06 E -98.9 125.2
af-p61018-f1 1 P61018 87.32 1e-141 ASP A:89 A:89 7.0 0.047 E -100.2 125.4