Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 229433272 . C A CCDS31050.1:NM_004578.3:c.334Cga>Aga_NP_004569.2:p.112R>R Homo sapiens RAB4A, member RAS oncogene family (RAB4A), transcript variant 1, mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2bmd 1 P20338 100.0 1e-136 X-RAY
 2005-04-25 ARG A:109 A:109 60.0 0.267 H -70.2 -30.9 60.0 0.267 0.0 HOH
 2.550
 NH2
 O
2bme 1 P20338 100.0 1e-136 X-RAY
 2005-04-25 ARG A:109 A:109 116.0 0.516 H -64.5 -36.0 116.0 0.516 0.0 HOH
 2.894
 NH1
 O
ARG B:109 B:109 153.0 0.68 H -62.0 -36.8 NA NA NA
ARG C:109 C:109 75.0 0.333 H -73.2 -36.6 NA NA NA
ARG D:109 D:109 60.0 0.267 H -73.7 -30.2 NA NA NA
1yu9 1 P20338 99.42 1e-124 X-RAY
 2005-07-26 ARG A:110 A:107 65.0 0.289 H -75.8 -18.9 65.0 0.289 0.0 HOH
 2.732
 O
 O
1z0k 1 P20338 98.83 8e-124 X-RAY
 2005-07-26 ARG A:107 A:107 36.0 0.16 H -69.2 -27.4 36.0 0.16 0.0 HOH
 2.707
 NE
 O
ARG C:107 C:107 68.0 0.302 H -74.1 -27.0 NA NA NA
2o52 1 P61018 89.33 4e-118 X-RAY
 2006-12-19 ARG A:124 A:107 75.0 0.333 H -73.5 -22.7 75.0 0.333 0.0 HOH
 6.575
 C
 O
ARG B:124 B:107 87.0 0.387 H -75.5 -28.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p20338-f1 1 P20338 100.0 2e-165 ARG A:112 A:112 117.0 0.52 H -67.5 -33.9
af-p61018-f1 1 P61018 87.32 1e-141 ARG A:107 A:107 111.0 0.493 H -65.8 -32.5