Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 229433333 . C A CCDS31050.1:NM_004578.3:c.395gCa>gAa_NP_004569.2:p.132A>E Homo sapiens RAB4A, member RAS oncogene family (RAB4A), transcript variant 1, mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2bmd 1 P20338 100.0 1e-136 X-RAY
 2005-04-25 ALA A:129 A:129 91.0 0.791 G -63.9 -18.8 91.0 0.791 0.0 GDP
HOH
 9.867
2.886
 N
O
 N2
O
2bme 1 P20338 100.0 1e-136 X-RAY
 2005-04-25 ALA A:129 A:129 99.0 0.861 G -67.6 -16.0 99.0 0.861 0.0 GNP
HOH
 9.807
2.789
 N
N
 N2
O
ALA B:129 B:129 98.0 0.852 G -49.8 -31.2 NA NA NA
ALA C:129 C:129 95.0 0.826 G -56.0 -25.9 NA NA NA
ALA D:129 D:129 102.0 0.887 G -61.8 -22.8 NA NA NA
1yu9 1 P20338 99.42 1e-124 X-RAY
 2005-07-26 ALA A:130 A:127 103.0 0.896 G -63.5 -26.1 103.0 0.896 0.0 GNP
HOH
 9.935
2.850
 N
O
 N2
O
1z0k 1 P20338 98.83 8e-124 X-RAY
 2005-07-26 ALA A:127 A:127 100.0 0.87 G -55.7 -32.7 100.0 0.87 0.0 GTP
HOH
 9.989
2.608
 N
O
 N2
O
ALA C:127 C:127 100.0 0.87 G -59.8 -31.0 NA NA NA
2o52 1 P61018 89.33 4e-118 X-RAY
 2006-12-19 PRO A:144 A:127 120.0 0.828 G -58.1 -37.0 120.0 0.828 0.0 GDP
HOH
 9.300
6.305
 CD
O
 N2
O
PRO B:144 B:127 125.0 0.862 G -60.8 -15.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p20338-f1 1 P20338 100.0 2e-165 ALA A:132 A:132 101.0 0.878 G -63.9 -27.4
af-p61018-f1 1 P61018 87.32 1e-141 PRO A:127 A:127 128.0 0.883 G -61.5 -21.9