Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 229433339 . G A CCDS31050.1:NM_004578.3:c.401cGt>cAt_NP_004569.2:p.134R>H Homo sapiens RAB4A, member RAS oncogene family (RAB4A), transcript variant 1, mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2bmd 1 P20338 100.0 1e-136 X-RAY
 2005-04-25 ARG A:131 A:131 80.0 0.356 -64.6 130.3 80.0 0.356 0.0 HOH
 2.783
 O
 O
2bme 1 P20338 100.0 1e-136 X-RAY
 2005-04-25 ARG A:131 A:131 70.0 0.311 -53.9 131.6 70.0 0.311 0.0 TRS
HOH
 6.191
3.400
 NH2
NH1
 O3
O
ARG B:131 B:131 76.0 0.338 -51.7 135.6 NA NA NA
ARG C:131 C:131 77.0 0.342 -49.1 131.6 NA NA NA
ARG D:131 D:131 64.0 0.284 -59.7 129.4 NA NA NA
1yu9 1 P20338 99.42 1e-124 X-RAY
 2005-07-26 ARG A:132 A:129 69.0 0.307 -57.7 130.9 69.0 0.307 0.0 HOH
 2.784
 O
 O
1z0k 1 P20338 98.83 8e-124 X-RAY
 2005-07-26 ARG A:129 A:129 66.0 0.293 -53.9 128.8 66.0 0.293 0.0 HOH
 3.090
 O
 O
ARG C:129 C:129 78.0 0.347 -54.9 138.3 NA NA NA
2o52 1 P61018 89.33 4e-118 X-RAY
 2006-12-19 ARG A:146 A:129 56.0 0.249 -46.7 135.9 56.0 0.249 0.0 HOH
 3.545
 NH1
 O
ARG B:146 B:129 71.0 0.316 -53.7 132.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p20338-f1 1 P20338 100.0 2e-165 ARG A:134 A:134 63.0 0.28 -61.4 123.0
af-p61018-f1 1 P61018 87.32 1e-141 ARG A:129 A:129 55.0 0.244 -59.4 127.1