Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 229433359 . G A CCDS31050.1:NM_004578.3:c.421Gcc>Acc_NP_004569.2:p.141A>T Homo sapiens RAB4A, member RAS oncogene family (RAB4A), transcript variant 1, mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2bmd 1 P20338 100.0 1e-136 X-RAY
 2005-04-25 ALA A:138 A:138 0.0 0.0 H -70.9 -36.8 0.0 0.0 0.0 GOL
HOH
 6.662
3.661
 CA
CB
 O2
O
2bme 1 P20338 100.0 1e-136 X-RAY
 2005-04-25 ALA A:138 A:138 0.0 0.0 H -63.0 -34.9 0.0 0.0 0.0 TRS
BME
HOH
 9.087
9.195
3.972
 CB
O
CB
 O2
S2
O
ALA B:138 B:138 0.0 0.0 H -69.1 -31.4 NA NA NA
ALA C:138 C:138 0.0 0.0 H -69.3 -33.4 NA NA NA
ALA D:138 D:138 0.0 0.0 H -69.8 -33.1 NA NA NA
1yu9 1 P20338 99.42 1e-124 X-RAY
 2005-07-26 ALA A:139 A:136 0.0 0.0 H -64.2 -42.9 0.0 0.0 0.0 HOH
 3.746
 CB
 O
1z0k 1 P20338 98.83 8e-124 X-RAY
 2005-07-26 ALA A:136 A:136 0.0 0.0 H -68.6 -39.1 0.0 0.0 0.0 HOH
 3.917
 CB
 O
ALA C:136 C:136 0.0 0.0 H -66.2 -40.7 NA NA NA
2o52 1 P61018 89.33 4e-118 X-RAY
 2006-12-19 ALA A:153 A:136 0.0 0.0 H -64.5 -41.1 0.0 0.0 0.0 HOH
 3.673
 CB
 O
ALA B:153 B:136 0.0 0.0 H -65.8 -37.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p20338-f1 1 P20338 100.0 2e-165 ALA A:141 A:141 0.0 0.0 H -67.9 -37.7
af-p61018-f1 1 P61018 87.32 1e-141 ALA A:136 A:136 0.0 0.0 H -67.1 -37.0