Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230338892 . G A CCDS1582.1:NM_004481.3:c.230cGg>cAg_NP_004472.1:p.77R>Q Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:77 A:77 136.0 0.604 -68.4 145.1 NA NA NA
ARG B:77 B:77 136.0 0.604 -73.7 140.2 NA NA NA
ARG C:77 C:77 136.0 0.604 -72.9 141.1 136.0 0.604 0.0 HOH
 4.452
 NH2
 O
ARG D:77 D:77 140.0 0.622 -68.4 146.4 NA NA NA
ARG E:77 E:77 135.0 0.6 -70.7 145.1 NA NA NA
ARG F:77 F:77 133.0 0.591 -71.3 145.6 133.0 0.591 0.0 HOH
 3.003
 N
 O
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:77 A:77 129.0 0.573 -66.6 151.1 NA NA NA
ARG B:77 B:77 137.0 0.609 -64.2 148.5 137.0 0.609 0.0 HOH
 2.849
 NH1
 O
ARG C:77 C:77 160.0 0.711 -68.5 133.7 NA NA NA
ARG D:77 D:77 139.0 0.618 -65.0 148.7 NA NA NA
ARG E:77 E:77 129.0 0.573 -66.9 149.7 NA NA NA
ARG F:77 F:77 139.0 0.618 -63.3 147.4 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:77 A:77 140.0 0.622 -62.8 142.0 140.0 0.622 0.0
ARG B:77 B:77 138.0 0.613 -64.3 141.0 138.0 0.613 0.0
ARG D:77 D:77 140.0 0.622 -63.9 144.0 NA NA NA
ARG E:77 E:77 136.0 0.604 -64.3 142.5 NA NA NA
ARG F:77 F:77 157.0 0.698 -62.0 137.6 NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:77 A:77 138.0 0.613 -67.4 143.7 138.0 0.613 0.0 HOH
 2.881
 N
 O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:77 A:77 160.0 0.711 -68.9 145.4 160.0 0.711 0.0 SO4
SO4
HOH
 7.607
2.651
2.776
 CD
NH2
CD
 O3
O4
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:77 A:77 161.0 0.716 -69.4 142.3 161.0 0.716 0.0 SO4
SO4
HOH
 7.349
2.591
2.847
 CD
NH2
N
 O1
O2
O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 ARG A:77 A:77 131.0 0.582 -65.3 146.0 NA NA NA
ARG B:77 B:77 137.0 0.609 -66.1 140.4 NA NA NA
ARG C:77 C:77 128.0 0.569 -39.9 133.1 128.0 0.569 0.0 HOH
 2.785
 N
 O
ARG D:77 D:77 140.0 0.622 -62.2 142.6 140.0 0.622 0.0 HOH
 2.837
 NH2
 O
ARG E:77 E:77 127.0 0.564 -71.0 141.7 NA NA NA
ARG F:77 F:77 139.0 0.618 -70.6 149.3 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 ARG A:77 A:77 139.0 0.618 -66.9 145.9 NA NA NA
ARG B:77 B:77 138.0 0.613 -66.7 147.0 NA NA NA
ARG C:77 C:77 136.0 0.604 -66.1 146.0 NA NA NA
ARG D:77 D:77 143.0 0.636 -68.7 147.1 NA NA NA
ARG E:77 E:77 133.0 0.591 -67.6 147.3 133.0 0.591 0.0 HOH
 2.993
 CD
 O
ARG F:77 F:77 138.0 0.613 -67.9 147.3 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 ARG C:77 C:77 137.0 0.609 -64.2 142.1 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 ARG A:77 A:77 145.0 0.644 -68.5 141.1 145.0 0.644 0.0 HOH
 6.968
 N
 O
ARG B:77 B:77 159.0 0.707 -74.6 151.2 NA NA NA
ARG C:77 C:77 136.0 0.604 -70.9 152.3 136.0 0.604 0.0
ARG D:77 D:77 135.0 0.6 -70.3 152.5 NA NA NA
ARG E:77 E:77 130.0 0.578 -72.6 157.2 NA NA NA
ARG F:77 NA:NA DO NA DO DO DO NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ARG A:7 A:77 156.0 0.693 -70.1 142.5 156.0 0.693 0.0 HOH
 2.937
 N
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ARG A:7 A:77 161.0 0.716 -69.5 153.1 161.0 0.716 0.0
ARG B:7 B:77 155.0 0.689 -56.6 175.7 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 ARG A:34 A:77 44.0 NA -69.6 146.6 44.0 NA NA HOH
 2.930
 N
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 ARG A:9 A:77 158.0 0.702 -70.5 146.6 158.0 0.702 0.0
ARG B:9 B:77 160.0 0.711 -69.3 145.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 ARG A:77 A:77 98.0 0.436 -68.5 147.7