Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230338927 . G A CCDS1582.1:NM_004481.3:c.265Ggg>Agg_NP_004472.1:p.89G>R Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 GLY A:89 A:89 85.0 1.0 T 109.7 -39.3 NA NA NA
GLY B:89 B:89 71.0 0.947 T -53.9 -21.7 NA NA NA
GLY C:89 C:89 82.0 1.0 T 107.0 -39.1 82.0 1.0 0.0 HOH
 7.012
 C
 O
GLY D:89 D:89 81.0 1.0 T 108.8 -39.2 NA NA NA
GLY E:89 E:89 69.0 0.92 T 108.3 -39.5 NA NA NA
GLY F:89 F:89 72.0 0.96 T -75.0 -35.1 72.0 0.96 0.0 HOH
 9.370
 O
 O
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 GLY A:89 A:89 80.0 1.0 T 75.3 5.3 NA NA NA
GLY B:89 B:89 78.0 1.0 T 74.9 6.2 78.0 1.0 0.0 HOH
 5.175
 O
 O
GLY C:89 C:89 64.0 0.853 T -65.3 -10.7 NA NA NA
GLY D:89 D:89 66.0 0.88 T -66.0 -9.4 NA NA NA
GLY E:89 E:89 83.0 1.0 T 77.3 2.9 NA NA NA
GLY F:89 F:89 80.0 1.0 T 75.7 5.1 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 GLY A:89 A:89 72.0 0.96 T -43.7 -37.3 72.0 0.96 0.0
GLY B:89 B:89 68.0 0.907 -116.7 360.0 68.0 0.907 0.0
GLY D:89 D:89 70.0 0.933 T -45.4 -35.7 NA NA NA
GLY E:89 E:89 82.0 1.0 T 86.5 -4.5 NA NA NA
GLY F:89 NA:NA DO NA DO DO DO NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 GLY A:89 A:89 86.0 1.0 G -71.3 -7.4 86.0 1.0 0.0 SO4
HOH
 2.526
2.213
 N
O
 O3
O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 GLY A:89 A:89 85.0 1.0 G -76.2 -2.0 85.0 1.0 0.0 HOH
 2.669
 O
 O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 GLY A:89 A:89 81.0 1.0 T -67.9 -18.9 81.0 1.0 0.0 HOH
 2.756
 O
 O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 GLY A:89 A:89 86.0 1.0 T 93.7 -37.0 NA NA NA
GLY B:89 B:89 79.0 1.0 T 87.7 -8.2 NA NA NA
GLY C:89 C:89 61.0 0.813 T -64.2 7.1 61.0 0.813 0.0 HOH
 2.470
 O
 O
GLY D:89 D:89 84.0 1.0 T -92.2 -6.0 84.0 1.0 0.0 HOH
 2.542
 O
 O
GLY E:89 E:89 65.0 0.867 T 109.7 -36.4 NA NA NA
GLY F:89 F:89 70.0 0.933 T 81.8 24.9 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 GLY A:89 A:89 83.0 1.0 T 104.9 -45.1 NA NA NA
GLY B:89 B:89 79.0 1.0 T 103.3 -43.5 NA NA NA
GLY C:89 C:89 79.0 1.0 T 103.0 -43.1 NA NA NA
GLY D:89 D:89 79.0 1.0 T 104.8 -45.3 NA NA NA
GLY E:89 E:89 80.0 1.0 T 103.7 -43.7 80.0 1.0 0.0 HOH
 5.284
 O
 O
GLY F:89 F:89 80.0 1.0 T 103.7 -44.8 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 GLY C:89 C:89 74.0 0.987 -122.5 360.0 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 GLY A:89 A:89 56.0 0.747 S -77.2 -65.2 56.0 0.747 0.0 HOH
 3.867
 CA
 O
GLY B:89 B:89 58.0 0.773 T -76.4 -69.6 NA NA NA
GLY C:89 C:89 53.0 0.707 T -84.6 72.5 53.0 0.707 0.0 HOH
 3.029
 O
 O
GLY D:89 D:89 65.0 0.867 T -67.3 3.5 NA NA NA
GLY E:89 E:89 53.0 0.707 -137.3 -143.8 NA NA NA
GLY F:89 F:89 82.0 1.0 -80.7 70.6 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 GLY A:19 A:89 59.0 0.787 T -76.9 6.3 59.0 0.787 0.0 HOH
 3.428
 N
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 GLY A:19 A:89 83.0 1.0 -130.3 360.0 83.0 1.0 0.0
GLY B:19 B:89 75.0 1.0 -108.6 360.0 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 GLY A:46 A:89 61.0 0.813 T -60.1 -21.1 61.0 0.813 0.0 HOH
 3.260
 N
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 GLY A:21 A:89 95.0 1.0 103.7 360.0 95.0 1.0 0.0 HOH
 5.438
 O
 O
GLY B:21 NA:NA DO NA DO DO DO NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 GLY A:89 A:89 66.0 0.88 T -67.6 -13.2