Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230338931 . C A CCDS1582.1:NM_004481.3:c.269aCg>aAg_NP_004472.1:p.90T>K Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 THR A:90 A:90 49.0 0.35 S -103.2 14.8 NA NA NA
THR B:90 B:90 20.0 0.143 T -128.4 19.7 NA NA NA
THR C:90 C:90 49.0 0.35 S -103.1 14.6 49.0 0.35 0.0 HOH
 2.973
 OG1
 O
THR D:90 D:90 51.0 0.364 S -103.3 15.0 NA NA NA
THR E:90 E:90 19.0 0.136 S -102.6 14.9 NA NA NA
THR F:90 F:90 22.0 0.157 S -91.2 14.7 22.0 0.157 0.0
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 THR A:90 A:90 19.0 0.136 S -120.6 14.1 NA NA NA
THR B:90 B:90 19.0 0.136 S -120.8 14.8 19.0 0.136 0.0 HOH
 5.703
 CG2
 O
THR C:90 C:90 22.0 0.157 T -136.3 17.4 NA NA NA
THR D:90 D:90 48.0 0.343 T -134.6 15.4 NA NA NA
THR E:90 E:90 20.0 0.143 S -119.9 13.6 NA NA NA
THR F:90 F:90 20.0 0.143 S -120.8 14.6 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 THR A:90 A:90 20.0 0.143 T -118.8 17.0 20.0 0.143 0.0
THR B:90 NA:NA DO NA DO DO DO NA NA NA
THR D:90 D:90 48.0 0.343 T -123.7 23.0 NA NA NA
THR E:90 E:90 17.0 0.121 S -121.9 13.4 NA NA NA
THR F:90 NA:NA DO NA DO DO DO NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 THR A:90 A:90 49.0 0.35 G -83.0 0.5 49.0 0.35 0.0 SO4
HOH
 4.487
2.582
 N
OG1
 O3
O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 THR A:90 A:90 36.0 0.257 G -87.7 0.6 36.0 0.257 0.0 HOH
 2.659
 O
 O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 THR A:90 A:90 51.0 0.364 T -104.4 11.2 51.0 0.364 0.0 HOH
 2.697
 CG2
 O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 THR A:90 A:90 24.0 0.171 S -92.8 4.7 NA NA NA
THR B:90 B:90 34.0 0.243 S -143.2 68.1 NA NA NA
THR C:90 C:90 49.0 0.35 T -148.1 21.5 49.0 0.35 0.0 HOH
 2.544
 OG1
 O
THR D:90 D:90 21.0 0.15 T -88.7 6.7 21.0 0.15 0.0 HOH
 3.336
 OG1
 O
THR E:90 E:90 26.0 0.186 S -93.9 4.0 NA NA NA
THR F:90 F:90 31.0 0.221 S -143.3 13.9 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 THR A:90 A:90 24.0 0.171 S -94.5 13.3 NA NA NA
THR B:90 B:90 23.0 0.164 S -93.8 12.1 NA NA NA
THR C:90 C:90 49.0 0.35 S -93.6 11.4 NA NA NA
THR D:90 D:90 22.0 0.157 S -94.5 12.3 NA NA NA
THR E:90 E:90 24.0 0.171 S -94.1 11.7 24.0 0.171 0.0 HOH
 3.122
 OG1
 O
THR F:90 F:90 23.0 0.164 S -94.3 11.5 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 THR C:90 NA:NA DO NA DO DO DO NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 THR A:90 A:90 41.0 0.293 S -34.5 66.5 41.0 0.293 0.0 HOH
 4.193
 O
 O
THR B:90 B:90 37.0 0.264 S -58.3 70.0 NA NA NA
THR C:90 C:90 73.0 0.521 T -177.3 -48.6 73.0 0.521 0.0 HOH
 3.927
 N
 O
THR D:90 D:90 48.0 0.343 T -146.2 42.7 NA NA NA
THR E:90 E:90 148.0 1.0 -110.8 360.0 NA NA NA
THR F:90 F:90 109.0 0.779 -140.4 360.0 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 THR A:20 A:90 19.0 0.136 T -148.3 19.5 19.0 0.136 0.0 HOH
 2.649
 OG1
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 THR A:20 NA:NA DO NA DO DO DO NA NA NA
THR B:20 NA:NA DO NA DO DO DO NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 THR A:47 A:90 45.0 0.321 T -138.1 27.4 45.0 0.321 0.0 HOH
 2.688
 OG1
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 THR A:22 NA:NA DO NA DO DO DO NA NA NA
THR B:22 NA:NA DO NA DO DO DO NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 THR A:90 A:90 19.0 0.136 T -130.8 9.1